Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:112638372-113788405

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4933415J04Rik 5 112640335 to 112641635 1300 + unclassified gene RIKEN cDNA 4933415J04 gene
Cpgi16273 5 112640772 to 112641515 743 CpG island CpG island 16273
Gm30529 5 112643830 to 112680538 36708 + lncRNA gene predicted gene, 30529
Gm42864 5 112649367 to 112652112 2745 + lincRNA gene predicted gene 42864
Gm42865 5 112675375 to 112680587 5212 + lincRNA gene predicted gene 42865
Myo18b 5 112688876 to 112896362 207486 - protein coding gene myosin XVIIIb
Cpgi16274 5 112692626 to 112692780 154 CpG island CpG island 16274
Mdq12 5 112763278 to 112763278 0 QTL mammary ductal QTL 12
Tssr52582 5 112765909 to 112765947 38 - TSS region transcription start site region 52582
Tssr52583 5 112766969 to 112766980 11 - TSS region transcription start site region 52583
Tssr52584 5 112767292 to 112767315 23 - TSS region transcription start site region 52584
Tssr52585 5 112767318 to 112767329 11 - TSS region transcription start site region 52585
Tssr52586 5 112767335 to 112767347 12 - TSS region transcription start site region 52586
Tssr52587 5 112771200 to 112771219 19 - TSS region transcription start site region 52587
D5Mit366 5 112787937 to 112788111 174 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 366
Tssr52588 5 112790703 to 112790713 10 - TSS region transcription start site region 52588
Tssr52589 5 112790714 to 112790732 18 - TSS region transcription start site region 52589
Tssr48004 5 112793256 to 112793265 9 + TSS region transcription start site region 48004
Tssr48005 5 112793277 to 112793297 20 + TSS region transcription start site region 48005
1700095B10Rik 5 112793292 to 112801701 8409 + antisense lncRNA gene RIKEN cDNA 1700095B10 gene
Tssr48006 5 112793331 to 112793338 7 + TSS region transcription start site region 48006
Tssr1596 5 112840465 to 112840469 4 + TSS region transcription start site region 1596
Cpgi16275 5 112848077 to 112848231 154 CpG island CpG island 16275
Tssr48007 5 112878043 to 112878047 4 + TSS region transcription start site region 48007
Tssr52590 5 112896350 to 112896405 55 - TSS region transcription start site region 52590
Tssr52591 5 112896413 to 112896424 11 - TSS region transcription start site region 52591
Grk3 5 112910482 to 113015791 105309 - protein coding gene G protein-coupled receptor kinase 3
Tssr52592 5 112966392 to 112966397 5 - TSS region transcription start site region 52592
Cpgi16276 5 113014929 to 113016091 1162 CpG island CpG island 16276
Tssr52593 5 113015473 to 113015567 94 - TSS region transcription start site region 52593
Tssr48008 5 113043427 to 113043428 1 + TSS region transcription start site region 48008
Gm22740 5 113044144 to 113044252 108 + snRNA gene predicted gene, 22740
Cpgi16277 5 113054321 to 113054491 170 CpG island CpG island 16277
Crybb2 5 113058258 to 113070117 11859 - protein coding gene crystallin, beta B2
Tssr48009 5 113060471 to 113060489 18 + TSS region transcription start site region 48009
Gm43247 5 113060488 to 113060949 461 + pseudogene predicted gene 43247
Tssr48010 5 113068710 to 113068724 14 + TSS region transcription start site region 48010
Tssr52594 5 113069658 to 113069661 3 - TSS region transcription start site region 52594
Tssr52595 5 113069752 to 113069764 12 - TSS region transcription start site region 52595
Crybb3 5 113075839 to 113081584 5745 - protein coding gene crystallin, beta B3
Tssr52596 5 113075871 to 113075896 25 - TSS region transcription start site region 52596
Cpgi16278 5 113075895 to 113076120 225 CpG island CpG island 16278
Tssr52597 5 113076539 to 113076543 4 - TSS region transcription start site region 52597
Tssr52598 5 113076986 to 113077005 19 - TSS region transcription start site region 52598
Tssr52599 5 113077122 to 113077131 9 - TSS region transcription start site region 52599
Tssr52600 5 113077150 to 113077164 14 - TSS region transcription start site region 52600
Tssr52601 5 113077170 to 113077182 12 - TSS region transcription start site region 52601
Tssr52602 5 113077203 to 113077223 20 - TSS region transcription start site region 52602
Tssr52603 5 113077230 to 113077239 9 - TSS region transcription start site region 52603
Tssr52604 5 113078450 to 113078463 13 - TSS region transcription start site region 52604
Tssr52605 5 113080566 to 113080578 12 - TSS region transcription start site region 52605
Tssr52606 5 113081580 to 113081584 4 - TSS region transcription start site region 52606
2900026A02Rik 5 113086323 to 113221236 134913 - protein coding gene RIKEN cDNA 2900026A02 gene
Gm43246 5 113100516 to 113101079 563 + unclassified gene predicted gene 43246
F830115B05Rik 5 113117571 to 113119464 1893 - unclassified non-coding RNA gene RIKEN cDNA F830115B05 gene
Tssr48011 5 113137289 to 113137324 35 + TSS region transcription start site region 48011
Cpgi16279 5 113137653 to 113139053 1400 CpG island CpG island 16279
4833439F03Rik 5 113137885 to 113141124 3239 + lncRNA gene RIKEN cDNA 4833439F03 gene
Tssr52607 5 113138079 to 113138097 18 - TSS region transcription start site region 52607
Tssr52608 5 113138114 to 113138151 37 - TSS region transcription start site region 52608
Tssr52609 5 113138153 to 113138177 24 - TSS region transcription start site region 52609
Tssr52610 5 113138404 to 113138448 44 - TSS region transcription start site region 52610
Tssr52611 5 113138449 to 113138514 65 - TSS region transcription start site region 52611
Tssr52612 5 113138544 to 113138561 17 - TSS region transcription start site region 52612
Tssr48012 5 113138672 to 113138683 11 + TSS region transcription start site region 48012
Tssr52613 5 113138722 to 113138738 16 - TSS region transcription start site region 52613
Tssr52614 5 113138954 to 113138966 12 - TSS region transcription start site region 52614
4930557B06Rik 5 113142449 to 113142829 380 + unclassified gene RIKEN cDNA 4930557B06 gene
Gm42161 5 113145328 to 113154368 9040 + lincRNA gene predicted gene, 42161
Tssr52615 5 113163288 to 113163308 20 - TSS region transcription start site region 52615
Tssr52616 5 113163319 to 113163333 14 - TSS region transcription start site region 52616
Tssr52617 5 113163917 to 113163921 4 - TSS region transcription start site region 52617
4930554B03Rik 5 113165313 to 113166256 943 unclassified gene RIKEN cDNA 4930554B03 gene
Gm43094 5 113165314 to 113166234 920 - unclassified gene predicted gene 43094
D5Mit278 5 113172519 to 113172667 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 278
Actd3 5 113172519 to 113172667 148 QTL activity-distance traveled 3
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Cpgi16280 5 113179839 to 113180422 583 CpG island CpG island 16280
Tssr52618 5 113188661 to 113188704 43 - TSS region transcription start site region 52618
Tssr52619 5 113211951 to 113211956 5 - TSS region transcription start site region 52619
Tssr52620 5 113213372 to 113213405 33 - TSS region transcription start site region 52620
Tssr52621 5 113219516 to 113219527 11 - TSS region transcription start site region 52621
Tssr52622 5 113219538 to 113219549 11 - TSS region transcription start site region 52622
Tssr52623 5 113219551 to 113219591 40 - TSS region transcription start site region 52623
Tssr52624 5 113219633 to 113219642 9 - TSS region transcription start site region 52624
Cpgi16281 5 113220374 to 113221755 1381 CpG island CpG island 16281
Tssr52625 5 113221230 to 113221242 12 - TSS region transcription start site region 52625
Tssr52626 5 113221258 to 113221299 41 - TSS region transcription start site region 52626
Tmem211 5 113226909 to 113239263 12354 + protein coding gene transmembrane protein 211
Sgsm1 5 113243220 to 113310786 67566 - protein coding gene small G protein signaling modulator 1
Tssr52627 5 113280547 to 113280569 22 - TSS region transcription start site region 52627
Tssr52628 5 113280572 to 113280606 34 - TSS region transcription start site region 52628
Cpgi16282 5 113286697 to 113287818 1121 CpG island CpG island 16282
Cpgi16283 5 113301909 to 113302361 452 CpG island CpG island 16283
Cpgi16284 5 113306748 to 113307066 318 CpG island CpG island 16284
Cpgi16285 5 113310323 to 113311060 737 CpG island CpG island 16285
Tssr52629 5 113310712 to 113310727 15 - TSS region transcription start site region 52629
Tssr52630 5 113310729 to 113310788 59 - TSS region transcription start site region 52630
Cpgi16286 5 113314109 to 113314586 477 CpG island CpG island 16286
4930405N21Rik 5 113320454 to 113321653 1199 - unclassified gene RIKEN cDNA 4930405N21 gene
Cpgi16287 5 113323856 to 113324502 646 CpG island CpG island 16287
Gm43353 5 113324186 to 113325480 1294 + unclassified gene predicted gene 43353
Tssr52631 5 113324312 to 113324349 37 - TSS region transcription start site region 52631
Mir7229 5 113324493 to 113324545 52 - miRNA gene microRNA 7229
Tssr48013 5 113330654 to 113330666 12 + TSS region transcription start site region 48013
Tssr52632 5 113332796 to 113332801 5 - TSS region transcription start site region 52632
Tssr52633 5 113333321 to 113333325 4 - TSS region transcription start site region 52633
Cpgi16288 5 113335170 to 113335377 207 CpG island CpG island 16288
Tssr48014 5 113335267 to 113335278 11 + TSS region transcription start site region 48014
Mir7230 5 113337590 to 113337645 55 - miRNA gene microRNA 7230
Tssr52634 5 113340049 to 113340085 36 - TSS region transcription start site region 52634
Tssr52635 5 113340089 to 113340099 10 - TSS region transcription start site region 52635
Tssr48015 5 113340169 to 113340186 17 + TSS region transcription start site region 48015
Tssr52636 5 113347650 to 113347657 7 - TSS region transcription start site region 52636
1700016C19Rik 5 113349842 to 113357123 7281 + unclassified non-coding RNA gene RIKEN cDNA 1700016C19 gene
Aym1 5 113357294 to 113357821 527 + protein coding gene activator of yeast meiotic promoters 1
4930404F17Rik 5 113364311 to 113365728 1417 unclassified gene RIKEN cDNA 4930404F17 gene
Tssr1597 5 113364903 to 113364908 5 + TSS region transcription start site region 1597
Tssr48016 5 113364935 to 113364952 17 + TSS region transcription start site region 48016
Cpgi16289 5 113365987 to 113366317 330 CpG island CpG island 16289
Cpgi16290 5 113373254 to 113373736 482 CpG island CpG island 16290
Tssr52637 5 113413069 to 113413079 10 - TSS region transcription start site region 52637
Tssr52638 5 113413082 to 113413094 12 - TSS region transcription start site region 52638
Tssr48017 5 113445712 to 113445716 4 + TSS region transcription start site region 48017
Cpgi16291 5 113461577 to 113461801 224 CpG island CpG island 16291
Gm30812 5 113462249 to 113476183 13934 + lncRNA gene predicted gene, 30812
Tssr48018 5 113489104 to 113489125 21 + TSS region transcription start site region 48018
Wscd2 5 113490333 to 113589725 99392 + protein coding gene WSC domain containing 2
Cpgi16292 5 113490372 to 113491252 880 CpG island CpG island 16292
Tssr48019 5 113490515 to 113490548 33 + TSS region transcription start site region 48019
Tssr48020 5 113490580 to 113490598 18 + TSS region transcription start site region 48020
Tssr48021 5 113490735 to 113490760 25 + TSS region transcription start site region 48021
Tssr52639 5 113507165 to 113507168 3 - TSS region transcription start site region 52639
Tssr48022 5 113510839 to 113510845 6 + TSS region transcription start site region 48022
Tssr48023 5 113510899 to 113510905 6 + TSS region transcription start site region 48023
Tssr48024 5 113539047 to 113539053 6 + TSS region transcription start site region 48024
Tssr48025 5 113539074 to 113539090 16 + TSS region transcription start site region 48025
Tssr1598 5 113550413 to 113550414 1 + TSS region transcription start site region 1598
Cpgi16293 5 113550813 to 113551234 421 CpG island CpG island 16293
Tssr48026 5 113550878 to 113550891 13 + TSS region transcription start site region 48026
Tssr48027 5 113550906 to 113550923 17 + TSS region transcription start site region 48027
Tssr48028 5 113550998 to 113551017 19 + TSS region transcription start site region 48028
Cpgi16294 5 113554198 to 113554396 198 CpG island CpG island 16294
Tssr52640 5 113586078 to 113586099 21 - TSS region transcription start site region 52640
Cpgi16295 5 113587737 to 113588096 359 CpG island CpG island 16295
Tssr48029 5 113589130 to 113589146 16 + TSS region transcription start site region 48029
Tssr52641 5 113596435 to 113596468 33 - TSS region transcription start site region 52641
Gm42002 5 113603228 to 113610998 7770 + lncRNA gene predicted gene, 42002
Cmklr1 5 113612354 to 113650426 38072 - protein coding gene chemokine-like receptor 1
Tssr52642 5 113614334 to 113614359 25 - TSS region transcription start site region 52642
Tssr52643 5 113639201 to 113639205 4 - TSS region transcription start site region 52643
Cpgi16296 5 113643505 to 113643753 248 CpG island CpG island 16296
Tssr52644 5 113644259 to 113644281 22 - TSS region transcription start site region 52644
Gm15736 5 113644963 to 113645682 719 + antisense lncRNA gene predicted gene 15736
Tssr52645 5 113650371 to 113650381 10 - TSS region transcription start site region 52645
Tssr52646 5 113650390 to 113650448 58 - TSS region transcription start site region 52646
Tssr52647 5 113650569 to 113650580 11 - TSS region transcription start site region 52647
Tssr52648 5 113654912 to 113654917 5 - TSS region transcription start site region 52648
1700069L16Rik 5 113692424 to 113724772 32348 - protein coding gene RIKEN cDNA 1700069L16 gene
Gm46919 5 113696020 to 113698711 2691 - lncRNA gene predicted gene, 46919
Tssr48030 5 113717377 to 113717414 37 + TSS region transcription start site region 48030
Cpgi16297 5 113724585 to 113724821 236 CpG island CpG island 16297
Tssr52649 5 113724771 to 113724788 17 - TSS region transcription start site region 52649
Cpgi16298 5 113727348 to 113727514 166 CpG island CpG island 16298
Cpgi16299 5 113735278 to 113736481 1203 CpG island CpG island 16299
Ficd 5 113735803 to 113740600 4797 + protein coding gene FIC domain containing
Tssr48031 5 113736003 to 113736030 27 + TSS region transcription start site region 48031
Sart3 5 113742444 to 113772505 30061 - protein coding gene squamous cell carcinoma antigen recognized by T cells 3
Tssr52650 5 113745188 to 113745197 9 - TSS region transcription start site region 52650
Gm3511 5 113767123 to 113767326 203 + pseudogene predicted gene 3511
Cpgi16300 5 113770917 to 113773401 2484 CpG island CpG island 16300
Tssr52651 5 113771643 to 113771659 16 - TSS region transcription start site region 52651
Tssr52652 5 113772635 to 113772706 71 - TSS region transcription start site region 52652
Tssr48032 5 113772786 to 113772827 41 + TSS region transcription start site region 48032
Iscu 5 113772812 to 113778282 5470 + protein coding gene iron-sulfur cluster assembly enzyme