Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111986068-112256069

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16250 5 112002242 to 112002473 231 CpG island CpG island 16250
D5Mit317 5 112085348 to 112085464 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 317
Chab7 5 112085348 to 112085464 116 QTL cholesterol absorption 7
Gm30032 5 112104845 to 112120913 16068 - lncRNA gene predicted gene, 30032
Tssr52544 5 112120887 to 112120915 28 - TSS region transcription start site region 52544
Tssr52545 5 112121068 to 112121069 1 - TSS region transcription start site region 52545
Cpgi16251 5 112153653 to 112154303 650 CpG island CpG island 16251
Tssr47949 5 112156222 to 112156231 9 + TSS region transcription start site region 47949
Tssr47950 5 112156233 to 112156240 7 + TSS region transcription start site region 47950
1700016B01Rik 5 112156237 to 112165244 9007 + lincRNA gene RIKEN cDNA 1700016B01 gene
Tssr47951 5 112195496 to 112195499 3 + TSS region transcription start site region 47951
Tssr47952 5 112206758 to 112206781 23 + TSS region transcription start site region 47952
1700028D13Rik 5 112206763 to 112210002 3239 + lincRNA gene RIKEN cDNA 1700028D13 gene
Tssr47953 5 112206786 to 112206793 7 + TSS region transcription start site region 47953
Miat 5 112213228 to 112228948 15720 - lincRNA gene myocardial infarction associated transcript (non-protein coding)
Cpgi16252 5 112214474 to 112214686 212 CpG island CpG island 16252
Gm26953 5 112215461 to 112233720 18259 + lincRNA gene predicted gene, 26953
Gm27998 5 112215507 to 112215867 360 - unclassified non-coding RNA gene predicted gene, 27998
Gm27882 5 112216740 to 112216813 73 - unclassified non-coding RNA gene predicted gene, 27882
Cpgi16253 5 112217044 to 112217200 156 CpG island CpG island 16253
Gm27627 5 112217318 to 112217467 149 - unclassified non-coding RNA gene predicted gene, 27627
Cpgi16254 5 112227351 to 112227883 532 CpG island CpG island 16254
Cpgi16255 5 112228093 to 112229254 1161 CpG island CpG island 16255
Gm27357 5 112228608 to 112228742 134 - unclassified non-coding RNA gene predicted gene, 27357
Tssr52546 5 112228633 to 112228680 47 - TSS region transcription start site region 52546
Tssr52547 5 112228769 to 112228810 41 - TSS region transcription start site region 52547
Tssr52548 5 112228900 to 112228926 26 - TSS region transcription start site region 52548
Tssr52549 5 112228934 to 112228975 41 - TSS region transcription start site region 52549
Tssr52550 5 112229067 to 112229087 20 - TSS region transcription start site region 52550
Cryba4 5 112246493 to 112252518 6025 - protein coding gene crystallin, beta A4
Tssr52551 5 112246536 to 112246554 18 - TSS region transcription start site region 52551
Tssr52552 5 112249324 to 112249340 16 - TSS region transcription start site region 52552
Tssr52553 5 112251137 to 112251177 40 - TSS region transcription start site region 52553
Tssr52554 5 112251186 to 112251205 19 - TSS region transcription start site region 52554
Tssr52555 5 112251208 to 112251219 11 - TSS region transcription start site region 52555
Tssr52556 5 112251221 to 112251237 16 - TSS region transcription start site region 52556
Tssr52557 5 112252450 to 112252463 13 - TSS region transcription start site region 52557
Tssr52558 5 112252513 to 112252525 12 - TSS region transcription start site region 52558
Tssr47954 5 112255813 to 112255827 14 + TSS region transcription start site region 47954
Crybb1 5 112255815 to 112269585 13770 + protein coding gene crystallin, beta B1