Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111358367-112242299

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitpnb 5 111330763 to 111388359 57596 + protein coding gene phosphatidylinositol transfer protein, beta
Gm36027 5 111357620 to 111363480 5860 + lncRNA gene predicted gene, 36027
Tssr1589 5 111380208 to 111380231 23 + TSS region transcription start site region 1589
Gm43118 5 111387515 to 111388289 774 - antisense lncRNA gene predicted gene 43118
Gm10405 5 111392059 to 111395732 3673 unclassified gene predicted gene 10405
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Tssr47933 5 111416609 to 111416619 10 + TSS region transcription start site region 47933
Tssr52540 5 111417125 to 111417138 13 - TSS region transcription start site region 52540
Tssr52541 5 111417140 to 111417159 19 - TSS region transcription start site region 52541
Tssr47934 5 111417263 to 111417306 43 + TSS region transcription start site region 47934
Tssr47935 5 111417317 to 111417319 2 + TSS region transcription start site region 47935
Tssr47936 5 111417759 to 111417770 11 + TSS region transcription start site region 47936
Mn1 5 111418166 to 111457025 38859 + protein coding gene meningioma 1
Tssr47937 5 111418186 to 111418203 17 + TSS region transcription start site region 47937
Tssr47938 5 111418221 to 111418233 12 + TSS region transcription start site region 47938
Tssr47939 5 111418253 to 111418268 15 + TSS region transcription start site region 47939
Tssr47940 5 111418651 to 111418662 11 + TSS region transcription start site region 47940
Tssr47941 5 111418708 to 111418715 7 + TSS region transcription start site region 47941
Tssr47942 5 111419014 to 111419061 47 + TSS region transcription start site region 47942
Tssr47943 5 111420160 to 111420188 28 + TSS region transcription start site region 47943
Tssr47944 5 111420249 to 111420260 11 + TSS region transcription start site region 47944
Gm43119 5 111423589 to 111425710 2121 + unclassified gene predicted gene 43119
D5Dcr54 5 111429038 to 111429134 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 54
Tssr47945 5 111429217 to 111429267 50 + TSS region transcription start site region 47945
Cpgi16245 5 111432080 to 111432405 325 CpG island CpG island 16245
Cpgi16246 5 111434179 to 111434444 265 CpG island CpG island 16246
Tssr47946 5 111454914 to 111454918 4 + TSS region transcription start site region 47946
Gm42155 5 111468194 to 111470848 2654 + lncRNA gene predicted gene, 42155
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542
Tssr1591 5 111630459 to 111630460 1 + TSS region transcription start site region 1591
Gm36386 5 111658694 to 111663487 4793 - lncRNA gene predicted gene, 36386
Gm36434 5 111663828 to 111666738 2910 + lncRNA gene predicted gene, 36434
Gm36481 5 111707737 to 111711541 3804 + lncRNA gene predicted gene, 36481
Gm26897 5 111733924 to 111734574 650 + protein coding gene predicted gene, 26897
E130006D01Rik 5 111734284 to 111761725 27441 - lincRNA gene RIKEN cDNA E130006D01 gene
Gm16019 5 111742849 to 111748176 5327 + lincRNA gene predicted gene 16019
Tssr52543 5 111761697 to 111761727 30 - TSS region transcription start site region 52543
Tssr47948 5 111793361 to 111793404 43 + TSS region transcription start site region 47948
Gm36535 5 111793367 to 111807299 13932 + lincRNA gene predicted gene, 36535
D5Mit117 5 111832983 to 111833310 327 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 117
Gm29935 5 111892863 to 111898829 5966 + lncRNA gene predicted gene, 29935
Cpgi16248 5 111894175 to 111894385 210 CpG island CpG island 16248
Gm36794 5 111895269 to 111947447 52178 - lncRNA gene predicted gene, 36794
D5Mit177 5 111899475 to 111899583 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 177
Gm36880 5 111910673 to 111919555 8882 + lncRNA gene predicted gene, 36880
Gm42488 5 111939804 to 111944235 4431 - lincRNA gene predicted gene 42488
Gm42156 5 111944434 to 111947531 3097 + lncRNA gene predicted gene, 42156
Cpgi16249 5 111957684 to 111958359 675 CpG island CpG island 16249
Cpgi16250 5 112002242 to 112002473 231 CpG island CpG island 16250
D5Mit317 5 112085348 to 112085464 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 317
Chab7 5 112085348 to 112085464 116 QTL cholesterol absorption 7
Gm30032 5 112104845 to 112120913 16068 - lncRNA gene predicted gene, 30032
Tssr52544 5 112120887 to 112120915 28 - TSS region transcription start site region 52544
Tssr52545 5 112121068 to 112121069 1 - TSS region transcription start site region 52545
Cpgi16251 5 112153653 to 112154303 650 CpG island CpG island 16251
Tssr47949 5 112156222 to 112156231 9 + TSS region transcription start site region 47949
Tssr47950 5 112156233 to 112156240 7 + TSS region transcription start site region 47950
1700016B01Rik 5 112156237 to 112165244 9007 + lincRNA gene RIKEN cDNA 1700016B01 gene
Tssr47951 5 112195496 to 112195499 3 + TSS region transcription start site region 47951
Tssr47952 5 112206758 to 112206781 23 + TSS region transcription start site region 47952
1700028D13Rik 5 112206763 to 112210002 3239 + lincRNA gene RIKEN cDNA 1700028D13 gene
Tssr47953 5 112206786 to 112206793 7 + TSS region transcription start site region 47953
Miat 5 112213228 to 112228948 15720 - lincRNA gene myocardial infarction associated transcript (non-protein coding)
Cpgi16252 5 112214474 to 112214686 212 CpG island CpG island 16252
Gm26953 5 112215461 to 112233720 18259 + lincRNA gene predicted gene, 26953
Gm27998 5 112215507 to 112215867 360 - unclassified non-coding RNA gene predicted gene, 27998
Gm27882 5 112216740 to 112216813 73 - unclassified non-coding RNA gene predicted gene, 27882
Cpgi16253 5 112217044 to 112217200 156 CpG island CpG island 16253
Gm27627 5 112217318 to 112217467 149 - unclassified non-coding RNA gene predicted gene, 27627
Cpgi16254 5 112227351 to 112227883 532 CpG island CpG island 16254
Cpgi16255 5 112228093 to 112229254 1161 CpG island CpG island 16255
Gm27357 5 112228608 to 112228742 134 - unclassified non-coding RNA gene predicted gene, 27357
Tssr52546 5 112228633 to 112228680 47 - TSS region transcription start site region 52546
Tssr52547 5 112228769 to 112228810 41 - TSS region transcription start site region 52547
Tssr52548 5 112228900 to 112228926 26 - TSS region transcription start site region 52548
Tssr52549 5 112228934 to 112228975 41 - TSS region transcription start site region 52549
Tssr52550 5 112229067 to 112229087 20 - TSS region transcription start site region 52550