Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110796078-111116081

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ulk1 5 110784488 to 110810097 25609 - protein coding gene unc-51 like kinase 1
Tssr52528 5 110808417 to 110808464 47 - TSS region transcription start site region 52528
Tssr1587 5 110808574 to 110808585 11 + TSS region transcription start site region 1587
Cpgi16237 5 110809212 to 110810583 1371 CpG island CpG island 16237
Tssr52529 5 110810018 to 110810027 9 - TSS region transcription start site region 52529
Tssr52530 5 110810043 to 110810062 19 - TSS region transcription start site region 52530
Tssr52531 5 110810068 to 110810075 7 - TSS region transcription start site region 52531
Tssr52532 5 110810080 to 110810113 33 - TSS region transcription start site region 52532
Tssr52533 5 110810115 to 110810133 18 - TSS region transcription start site region 52533
Tssr47909 5 110810307 to 110810327 20 + TSS region transcription start site region 47909
Hscb 5 110829070 to 110839777 10707 - protein coding gene HscB iron-sulfur cluster co-chaperone
Tssr52534 5 110836040 to 110836063 23 - TSS region transcription start site region 52534
Cpgi16238 5 110839308 to 110840326 1018 CpG island CpG island 16238
Tssr52535 5 110839720 to 110839734 14 - TSS region transcription start site region 52535
Tssr52536 5 110839739 to 110839756 17 - TSS region transcription start site region 52536
Tssr52537 5 110839757 to 110839786 29 - TSS region transcription start site region 52537
Tssr47910 5 110839973 to 110840022 49 + TSS region transcription start site region 47910
Chek2 5 110839979 to 110874145 34166 + protein coding gene checkpoint kinase 2
Tssr47911 5 110840231 to 110840283 52 + TSS region transcription start site region 47911
Tssr47912 5 110867886 to 110867914 28 + TSS region transcription start site region 47912
Tssr1588 5 110867930 to 110867938 8 + TSS region transcription start site region 1588
Gm42779 5 110876603 to 110877273 670 + pseudogene predicted gene 42779
Cpgi16239 5 110879388 to 110880472 1084 CpG island CpG island 16239
Tssr47913 5 110879788 to 110879842 54 + TSS region transcription start site region 47913
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr47914 5 110879846 to 110879887 41 + TSS region transcription start site region 47914
Tssr47915 5 110879926 to 110879941 15 + TSS region transcription start site region 47915
Tssr47916 5 110895205 to 110895241 36 + TSS region transcription start site region 47916
Tssr47917 5 110895270 to 110895304 34 + TSS region transcription start site region 47917
Tssr47918 5 110898566 to 110898571 5 + TSS region transcription start site region 47918
Gm15989 5 110905244 to 110905741 497 + pseudogene predicted gene 15989
Tssr47919 5 110906397 to 110906406 9 + TSS region transcription start site region 47919
Tssr47920 5 110906477 to 110906491 14 + TSS region transcription start site region 47920
Tssr47921 5 110906573 to 110906588 15 + TSS region transcription start site region 47921
Gm35973 5 110930102 to 110943879 13777 + lncRNA gene predicted gene, 35973
Tssr47922 5 110956078 to 110956081 3 + TSS region transcription start site region 47922
Tssr47923 5 110978656 to 110978676 20 + TSS region transcription start site region 47923
Gm42778 5 110978665 to 110979217 552 + unclassified gene predicted gene 42778
Cpgi16240 5 110978972 to 110980392 1420 CpG island CpG island 16240
Tssr47924 5 110990682 to 110990685 3 + TSS region transcription start site region 47924
Mir701 5 111004144 to 111004252 108 + miRNA gene microRNA 701
Gm15988 5 111008480 to 111008846 366 - pseudogene predicted gene 15988
D5Dcr53 5 111021843 to 111021938 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 53
Gm42780 5 111028552 to 111029285 733 + unclassified gene predicted gene 42780
Cpgi16241 5 111058446 to 111058648 202 CpG island CpG island 16241
Tssr47925 5 111104808 to 111104811 3 + TSS region transcription start site region 47925
8430408J09Rik 5 111109401 to 111111122 1721 unclassified gene RIKEN cDNA 8430408J09 gene