Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:109651577-110153696

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5430403G16Rik 5 109674545 to 109691041 16496 - protein coding gene RIKEN cDNA 5430403G16 gene
Afw16 5 109682300 to 109682419 119 QTL abdominal fat weight QTL 16
D5Mit314 5 109682300 to 109682419 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 314
Cpgi16216 5 109690646 to 109690843 197 CpG island CpG island 16216
Tssr52477 5 109690786 to 109690813 27 - TSS region transcription start site region 52477
Tssr52478 5 109690819 to 109690857 38 - TSS region transcription start site region 52478
4930522L14Rik 5 109735990 to 109751886 15896 - protein coding gene RIKEN cDNA 4930522L14 gene
Tssr52479 5 109751658 to 109751719 61 - TSS region transcription start site region 52479
Gm8508 5 109757525 to 109757887 362 - pseudogene predicted gene 8508
A430073D23Rik 5 109769407 to 109796298 26891 - lincRNA gene RIKEN cDNA A430073D23 gene
Cpgi16217 5 109795997 to 109796257 260 CpG island CpG island 16217
Tssr52480 5 109796270 to 109796286 16 - TSS region transcription start site region 52480
Gm10416 5 109833501 to 109834142 641 - pseudogene predicted pseudogene 10416
Tssr52481 5 109845002 to 109845009 7 - TSS region transcription start site region 52481
Tssr52482 5 109845018 to 109845058 40 - TSS region transcription start site region 52482
Gm35089 5 109859190 to 109866410 7220 - lncRNA gene predicted gene, 35089
Cpgi16218 5 109866510 to 109866810 300 CpG island CpG island 16218
AB010352 5 109866690 to 109885512 18822 + protein coding gene cDNA sequence AB010352
Tssr47861 5 109866701 to 109866747 46 + TSS region transcription start site region 47861
Gm26779 5 109886231 to 109891137 4906 + lincRNA gene predicted gene, 26779
Gm46918 5 109901577 to 109903696 2119 - protein coding gene predicted gene, 46918
Gm26808 5 109922649 to 109923481 832 - lincRNA gene predicted gene, 26808
Tssr47862 5 109923633 to 109923664 31 + TSS region transcription start site region 47862
Gm15446 5 109933563 to 109941710 8147 + protein coding gene predicted gene 15446
1010001B22Rik 5 109995511 to 109996398 887 - lincRNA gene RIKEN cDNA 1010001B22 gene
Tssr47863 5 109996506 to 109996522 16 + TSS region transcription start site region 47863
Zfp932 5 109996521 to 110010411 13890 + protein coding gene zinc finger protein 932
Gm17655 5 110046141 to 110047550 1409 - pseudogene predicted gene, 17655
Tssr52483 5 110058012 to 110058053 41 - TSS region transcription start site region 52483
Gm35315 5 110076136 to 110094420 18284 - protein coding gene predicted gene, 35315
Tssr52484 5 110083175 to 110083186 11 - TSS region transcription start site region 52484
Tssr52485 5 110086300 to 110086307 7 - TSS region transcription start site region 52485
Tssr52486 5 110086316 to 110086326 10 - TSS region transcription start site region 52486
Tssr52487 5 110086337 to 110086357 20 - TSS region transcription start site region 52487
Tssr52488 5 110094401 to 110094443 42 - TSS region transcription start site region 52488
Gm46940 5 110096817 to 110097732 915 - pseudogene predicted gene, 46940
Tssr52489 5 110097484 to 110097492 8 - TSS region transcription start site region 52489
Tssr47864 5 110099789 to 110099801 12 + TSS region transcription start site region 47864
Plcxd1 5 110099969 to 110105953 5984 + protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 1
Cpgi16219 5 110100186 to 110100746 560 CpG island CpG island 16219
Tssr47865 5 110100414 to 110100425 11 + TSS region transcription start site region 47865
Cpgi16220 5 110101109 to 110102518 1409 CpG island CpG island 16220
Tssr47866 5 110101177 to 110101216 39 + TSS region transcription start site region 47866
Tssr52490 5 110101205 to 110101240 35 - TSS region transcription start site region 52490
Gtpbp6 5 110103976 to 110108197 4221 - protein coding gene GTP binding protein 6 (putative)
Mrdq2 5 110105240 to 117955608 7850368 QTL modifier of retinal degeneration QTL 2
Cpgi16221 5 110106853 to 110108434 1581 CpG island CpG island 16221
Tssr52491 5 110108130 to 110108150 20 - TSS region transcription start site region 52491
Tssr52492 5 110108154 to 110108204 50 - TSS region transcription start site region 52492
Tssr52493 5 110108277 to 110108287 10 - TSS region transcription start site region 52493
Tssr47867 5 110110068 to 110110114 46 + TSS region transcription start site region 47867
Zfp605 5 110110092 to 110129794 19702 + protein coding gene zinc finger protein 605
Tssr47868 5 110110116 to 110110140 24 + TSS region transcription start site region 47868
Tssr47869 5 110110267 to 110110298 31 + TSS region transcription start site region 47869
Gm15484 5 110118022 to 110118849 827 - pseudogene predicted gene 15484
Tssr52494 5 110118945 to 110118947 2 - TSS region transcription start site region 52494
Cpgi16222 5 110135606 to 110136320 714 CpG island CpG island 16222
Tssr47870 5 110135823 to 110135887 64 + TSS region transcription start site region 47870
Chfr 5 110135842 to 110171972 36130 + protein coding gene checkpoint with forkhead and ring finger domains
Tssr47871 5 110136014 to 110136019 5 + TSS region transcription start site region 47871
Gm43136 5 110153487 to 110154122 635 - antisense lncRNA gene predicted gene 43136