Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:108685849-109497864

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42151 5 108683903 to 108694143 10240 - lncRNA gene predicted gene, 42151
Cpgi16208 5 108693828 to 108695267 1439 CpG island CpG island 16208
Tssr52458 5 108693968 to 108694005 37 - TSS region transcription start site region 52458
Tssr52459 5 108694033 to 108694045 12 - TSS region transcription start site region 52459
Tssr52460 5 108694059 to 108694109 50 - TSS region transcription start site region 52460
Tssr1580 5 108694199 to 108694217 18 + TSS region transcription start site region 1580
Tssr47851 5 108694222 to 108694255 33 + TSS region transcription start site region 47851
Fgfrl1 5 108694229 to 108706950 12721 + protein coding gene fibroblast growth factor receptor-like 1
Tssr47852 5 108694259 to 108694270 11 + TSS region transcription start site region 47852
Tssr47853 5 108694357 to 108694366 9 + TSS region transcription start site region 47853
Tssr1581 5 108694428 to 108694459 31 + TSS region transcription start site region 1581
Tssr47854 5 108704566 to 108704596 30 + TSS region transcription start site region 47854
Rnf212 5 108729290 to 108774982 45692 - protein coding gene ring finger protein 212
Tssr52461 5 108750957 to 108750995 38 - TSS region transcription start site region 52461
Tssr52462 5 108760055 to 108760069 14 - TSS region transcription start site region 52462
Gm46931 5 108760188 to 108763210 3022 + pseudogene predicted gene, 46931
Tssr47855 5 108762559 to 108762564 5 + TSS region transcription start site region 47855
1700047L14Rik 5 108763842 to 108768914 5072 + antisense lncRNA gene RIKEN cDNA 1700047L14 gene
Cpgi16209 5 108774716 to 108775266 550 CpG island CpG island 16209
Tssr52463 5 108775021 to 108775032 11 - TSS region transcription start site region 52463
Tmed11 5 108777235 to 108795363 18128 - protein coding gene transmembrane p24 trafficking protein 11
Tssr52464 5 108795345 to 108795351 6 - TSS region transcription start site region 52464
Tssr52465 5 108795352 to 108795374 22 - TSS region transcription start site region 52465
Vmn2r8 5 108797193 to 108808754 11561 - protein coding gene vomeronasal 2, receptor 8
Gm18594 5 108821721 to 108823123 1402 + pseudogene predicted gene, 18594
Vmn2r9 5 108842947 to 108852510 9563 - protein coding gene vomeronasal 2, receptor 9
Gm10417 5 108864833 to 108868354 3521 + protein coding gene predicted gene 10417
Vmn2r-ps21 5 108873215 to 108892353 19138 - pseudogene vomeronasal 2, receptor, pseudogene 21
Cpgi16210 5 108903219 to 108903529 310 CpG island CpG island 16210
Gm42627 5 108903226 to 108903449 223 + pseudogene predicted gene 42627
Gm20629 5 108943914 to 108949415 5501 + antisense lncRNA gene predicted gene 20629
Gm18971 5 108971677 to 108972050 373 + pseudogene predicted gene, 18971
Gm18595 5 108972806 to 108975895 3089 + pseudogene predicted gene, 18595
Vmn2r10 5 108995539 to 109006436 10897 - protein coding gene vomeronasal 2, receptor 10
Tssr52466 5 109015679 to 109015710 31 - TSS region transcription start site region 52466
Gm5871 5 109016198 to 109016915 717 - pseudogene predicted gene 5871
Tssr52467 5 109016922 to 109016941 19 - TSS region transcription start site region 52467
Vmn2r11 5 109046873 to 109059452 12579 - protein coding gene vomeronasal 2, receptor 11
Tssr47856 5 109055618 to 109055629 11 + TSS region transcription start site region 47856
Tssr47857 5 109055643 to 109055653 10 + TSS region transcription start site region 47857
Tssr47858 5 109055715 to 109055720 5 + TSS region transcription start site region 47858
Vmn2r12 5 109085849 to 109097864 12015 - protein coding gene vomeronasal 2, receptor 12
D5Mit240 5 109090758 to 109090907 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 240
Hypch 5 109090758 to 139133150 30042392 QTL hypercholesterolemia
Vmn2r13 5 109156068 to 109192107 36039 - protein coding gene vomeronasal 2, receptor 13
Vmn2r14 5 109214956 to 109224622 9666 - protein coding gene vomeronasal 2, receptor 14
Gm8473 5 109236877 to 109238530 1653 + pseudogene predicted gene 8473
Vmn2r15 5 109286269 to 109297556 11287 - protein coding gene vomeronasal 2, receptor 15
Vmn2r16 5 109330381 to 109364481 34100 + protein coding gene vomeronasal 2, receptor 16
Gm7171 5 109400644 to 109402077 1433 + pseudogene predicted gene 7171
Vmn2r17 5 109420013 to 109453387 33374 + protein coding gene vomeronasal 2, receptor 17
Tssr52468 5 109461282 to 109461294 12 - TSS region transcription start site region 52468
Gm18555 5 109473402 to 109473979 577 + pseudogene predicted gene, 18555