Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:108344643-114153925

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942 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
Pigg 5 108312782 to 108349355 36573 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class G
9330198I05Rik 5 108360187 to 108363885 3698 + lincRNA gene RIKEN cDNA 9330198I05 gene
Gm42518 5 108364037 to 108364974 937 - lincRNA gene predicted gene 42518
Gm42517 5 108366073 to 108367922 1849 - protein coding gene predicted gene 42517
Cpgi16198 5 108366434 to 108369682 3248 CpG island CpG island 16198
Tssr47825 5 108367732 to 108367774 42 + TSS region transcription start site region 47825
Tssr52414 5 108367895 to 108367922 27 - TSS region transcription start site region 52414
Gm10419 5 108367994 to 108374478 6484 + lincRNA gene predicted gene 10419
Tssr52415 5 108369406 to 108369431 25 - TSS region transcription start site region 52415
Pde6b 5 108388373 to 108431743 43370 + protein coding gene phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Tssr47826 5 108388376 to 108388387 11 + TSS region transcription start site region 47826
Tssr47827 5 108388405 to 108388411 6 + TSS region transcription start site region 47827
Tssr47828 5 108388412 to 108388434 22 + TSS region transcription start site region 47828
Tssr47829 5 108388437 to 108388440 3 + TSS region transcription start site region 47829
Tssr47830 5 108388446 to 108388453 7 + TSS region transcription start site region 47830
Cpgi16199 5 108388625 to 108388829 204 CpG island CpG island 16199
Tssr52416 5 108390954 to 108390958 4 - TSS region transcription start site region 52416
Tssr47831 5 108397607 to 108397615 8 + TSS region transcription start site region 47831
Gm34254 5 108402034 to 108405574 3540 - lncRNA gene predicted gene, 34254
Tssr47832 5 108404857 to 108404881 24 + TSS region transcription start site region 47832
Tssr47833 5 108404934 to 108404946 12 + TSS region transcription start site region 47833
Tssr47834 5 108404973 to 108404978 5 + TSS region transcription start site region 47834
Tssr52417 5 108405515 to 108405540 25 - TSS region transcription start site region 52417
Tssr52418 5 108405556 to 108405567 11 - TSS region transcription start site region 52418
Tssr47835 5 108406052 to 108406059 7 + TSS region transcription start site region 47835
Gm34204 5 108421934 to 108426894 4960 - lncRNA gene predicted gene, 34204
Atp5k 5 108433253 to 108434378 1125 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E
Cpgi16200 5 108433932 to 108434717 785 CpG island CpG island 16200
Tssr52419 5 108434359 to 108434370 11 - TSS region transcription start site region 52419
Tssr52420 5 108434373 to 108434409 36 - TSS region transcription start site region 52420
Tssr47836 5 108434447 to 108434458 11 + TSS region transcription start site region 47836
Gm34319 5 108434528 to 108441598 7070 + lncRNA gene predicted gene, 34319
Mfsd7a 5 108441054 to 108448891 7837 - protein coding gene major facilitator superfamily domain containing 7A
Tssr52421 5 108447099 to 108447110 11 - TSS region transcription start site region 52421
Cpgi16201 5 108448619 to 108448984 365 CpG island CpG island 16201
Tssr52422 5 108448882 to 108448912 30 - TSS region transcription start site region 52422
Tssr52423 5 108449094 to 108449105 11 - TSS region transcription start site region 52423
Tssr52424 5 108449112 to 108449129 17 - TSS region transcription start site region 52424
Tssr52425 5 108449179 to 108449190 11 - TSS region transcription start site region 52425
Cpgi16202 5 108460851 to 108461957 1106 CpG island CpG island 16202
Pcgf3 5 108461215 to 108503099 41884 + protein coding gene polycomb group ring finger 3
Tssr47837 5 108461222 to 108461241 19 + TSS region transcription start site region 47837
Tssr47838 5 108461251 to 108461305 54 + TSS region transcription start site region 47838
Tssr47839 5 108461308 to 108461342 34 + TSS region transcription start site region 47839
Tssr47840 5 108461414 to 108461425 11 + TSS region transcription start site region 47840
Tssr47841 5 108517131 to 108517141 10 + TSS region transcription start site region 47841
Gm10086 5 108517179 to 108517532 353 + pseudogene predicted pseudogene 10086
Cplx1 5 108518554 to 108550024 31470 - protein coding gene complexin 1
Tssr52426 5 108519130 to 108519141 11 - TSS region transcription start site region 52426
Tssr52427 5 108519410 to 108519420 10 - TSS region transcription start site region 52427
Tssr52428 5 108519698 to 108519710 12 - TSS region transcription start site region 52428
Tssr52429 5 108519858 to 108519875 17 - TSS region transcription start site region 52429
Tssr52430 5 108520030 to 108520055 25 - TSS region transcription start site region 52430
Tssr47842 5 108520281 to 108520300 19 + TSS region transcription start site region 47842
Tssr52431 5 108525422 to 108525433 11 - TSS region transcription start site region 52431
Tssr52432 5 108525519 to 108525540 21 - TSS region transcription start site region 52432
Tssr52433 5 108532413 to 108532417 4 - TSS region transcription start site region 52433
Tssr52434 5 108548558 to 108548570 12 - TSS region transcription start site region 52434
Tssr52435 5 108548601 to 108548610 9 - TSS region transcription start site region 52435
Tssr52436 5 108548841 to 108548852 11 - TSS region transcription start site region 52436
Cpgi16203 5 108549355 to 108550362 1007 CpG island CpG island 16203
Tssr52437 5 108549934 to 108550002 68 - TSS region transcription start site region 52437
Gm3907 5 108550080 to 108553353 3273 unclassified gene predicted gene 3907
Gm43364 5 108550081 to 108553354 3273 - unclassified gene predicted gene 43364
Tssr52438 5 108550175 to 108550208 33 - TSS region transcription start site region 52438
Gak 5 108569411 to 108629755 60344 - protein coding gene cyclin G associated kinase
Tssr52439 5 108582141 to 108582164 23 - TSS region transcription start site region 52439
Tssr52440 5 108582860 to 108582879 19 - TSS region transcription start site region 52440
Tssr52441 5 108587814 to 108587819 5 - TSS region transcription start site region 52441
Tssr52442 5 108594418 to 108594422 4 - TSS region transcription start site region 52442
Gm43365 5 108598521 to 108600626 2105 - unclassified gene predicted gene 43365
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Hmtb4 5 108614643 to 126805880 18191237 QTL hemostasis and thrombosis rebleeding time 4
Nmf15 5 108614643 to 140687148 32072505 heritable phenotypic marker neuroscience mutagenesis facility, 15
D5Mit338 5 108614643 to 108614761 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 338
Rgcs1 5 108614761 to 55230992 -53383769 QTL retinal ganglion cell susceptible 1
Tssr47843 5 108620221 to 108620225 4 + TSS region transcription start site region 47843
Cpgi16204 5 108629144 to 108630309 1165 CpG island CpG island 16204
Tssr52443 5 108629671 to 108629678 7 - TSS region transcription start site region 52443
Tssr52444 5 108629686 to 108629707 21 - TSS region transcription start site region 52444
Tssr52445 5 108629712 to 108629761 49 - TSS region transcription start site region 52445
Tmem175 5 108629747 to 108647770 18023 + protein coding gene transmembrane protein 175
Tssr47844 5 108629791 to 108629876 85 + TSS region transcription start site region 47844
Tssr47845 5 108629990 to 108630018 28 + TSS region transcription start site region 47845
Tssr47846 5 108630028 to 108630050 22 + TSS region transcription start site region 47846
0710007G10Rik 5 108644820 to 108645095 275 unclassified gene RIKEN cDNA 0710007G10 gene
Dgkq 5 108647044 to 108660827 13783 - protein coding gene diacylglycerol kinase, theta
Cpgi16205 5 108660264 to 108661060 796 CpG island CpG island 16205
Idua 5 108660331 to 108684557 24226 + protein coding gene iduronidase, alpha-L
Tssr52446 5 108660744 to 108660778 34 - TSS region transcription start site region 52446
Tssr52447 5 108660783 to 108660822 39 - TSS region transcription start site region 52447
Cpgi16206 5 108669048 to 108669620 572 CpG island CpG island 16206
Tssr47847 5 108669271 to 108669322 51 + TSS region transcription start site region 47847
Tssr47848 5 108669326 to 108669342 16 + TSS region transcription start site region 47848
Tssr47849 5 108669350 to 108669357 7 + TSS region transcription start site region 47849
Slc26a1 5 108669878 to 108675569 5691 - protein coding gene solute carrier family 26 (sulfate transporter), member 1
Tssr52448 5 108670585 to 108670606 21 - TSS region transcription start site region 52448
Tssr52449 5 108670639 to 108670651 12 - TSS region transcription start site region 52449
Tssr52450 5 108674776 to 108674785 9 - TSS region transcription start site region 52450
Tssr52451 5 108674787 to 108674802 15 - TSS region transcription start site region 52451
Tssr52452 5 108674809 to 108674815 6 - TSS region transcription start site region 52452
Tssr52453 5 108675316 to 108675383 67 - TSS region transcription start site region 52453
Tssr52454 5 108675594 to 108675626 32 - TSS region transcription start site region 52454
Tssr52455 5 108675640 to 108675652 12 - TSS region transcription start site region 52455
Tssr52456 5 108675658 to 108675671 13 - TSS region transcription start site region 52456
Cpgi16207 5 108677520 to 108677910 390 CpG island CpG island 16207
Tssr52457 5 108678457 to 108678489 32 - TSS region transcription start site region 52457
Tssr47850 5 108683538 to 108683552 14 + TSS region transcription start site region 47850
Gm42151 5 108683903 to 108694143 10240 - lncRNA gene predicted gene, 42151
Cpgi16208 5 108693828 to 108695267 1439 CpG island CpG island 16208
Tssr52458 5 108693968 to 108694005 37 - TSS region transcription start site region 52458
Tssr52459 5 108694033 to 108694045 12 - TSS region transcription start site region 52459
Tssr52460 5 108694059 to 108694109 50 - TSS region transcription start site region 52460
Tssr1580 5 108694199 to 108694217 18 + TSS region transcription start site region 1580
Tssr47851 5 108694222 to 108694255 33 + TSS region transcription start site region 47851
Fgfrl1 5 108694229 to 108706950 12721 + protein coding gene fibroblast growth factor receptor-like 1
Tssr47852 5 108694259 to 108694270 11 + TSS region transcription start site region 47852
Tssr47853 5 108694357 to 108694366 9 + TSS region transcription start site region 47853
Tssr1581 5 108694428 to 108694459 31 + TSS region transcription start site region 1581
Tssr47854 5 108704566 to 108704596 30 + TSS region transcription start site region 47854
Rnf212 5 108729290 to 108774982 45692 - protein coding gene ring finger protein 212
Tssr52461 5 108750957 to 108750995 38 - TSS region transcription start site region 52461
Tssr52462 5 108760055 to 108760069 14 - TSS region transcription start site region 52462
Gm46931 5 108760188 to 108763210 3022 + pseudogene predicted gene, 46931
Tssr47855 5 108762559 to 108762564 5 + TSS region transcription start site region 47855
1700047L14Rik 5 108763842 to 108768914 5072 + antisense lncRNA gene RIKEN cDNA 1700047L14 gene
Cpgi16209 5 108774716 to 108775266 550 CpG island CpG island 16209
Tssr52463 5 108775021 to 108775032 11 - TSS region transcription start site region 52463
Tmed11 5 108777235 to 108795363 18128 - protein coding gene transmembrane p24 trafficking protein 11
Tssr52464 5 108795345 to 108795351 6 - TSS region transcription start site region 52464
Tssr52465 5 108795352 to 108795374 22 - TSS region transcription start site region 52465
Vmn2r8 5 108797193 to 108808754 11561 - protein coding gene vomeronasal 2, receptor 8
Gm18594 5 108821721 to 108823123 1402 + pseudogene predicted gene, 18594
Vmn2r9 5 108842947 to 108852510 9563 - protein coding gene vomeronasal 2, receptor 9
Gm10417 5 108864833 to 108868354 3521 + protein coding gene predicted gene 10417
Vmn2r-ps21 5 108873215 to 108892353 19138 - pseudogene vomeronasal 2, receptor, pseudogene 21
Cpgi16210 5 108903219 to 108903529 310 CpG island CpG island 16210
Gm42627 5 108903226 to 108903449 223 + pseudogene predicted gene 42627
Gm20629 5 108943914 to 108949415 5501 + antisense lncRNA gene predicted gene 20629
Gm18971 5 108971677 to 108972050 373 + pseudogene predicted gene, 18971
Gm18595 5 108972806 to 108975895 3089 + pseudogene predicted gene, 18595
Vmn2r10 5 108995539 to 109006436 10897 - protein coding gene vomeronasal 2, receptor 10
Tssr52466 5 109015679 to 109015710 31 - TSS region transcription start site region 52466
Gm5871 5 109016198 to 109016915 717 - pseudogene predicted gene 5871
Tssr52467 5 109016922 to 109016941 19 - TSS region transcription start site region 52467
Vmn2r11 5 109046873 to 109059452 12579 - protein coding gene vomeronasal 2, receptor 11
Tssr47856 5 109055618 to 109055629 11 + TSS region transcription start site region 47856
Tssr47857 5 109055643 to 109055653 10 + TSS region transcription start site region 47857
Tssr47858 5 109055715 to 109055720 5 + TSS region transcription start site region 47858
Vmn2r12 5 109085849 to 109097864 12015 - protein coding gene vomeronasal 2, receptor 12
Hypch 5 109090758 to 139133150 30042392 QTL hypercholesterolemia
D5Mit240 5 109090758 to 109090907 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 240
Vmn2r13 5 109156068 to 109192107 36039 - protein coding gene vomeronasal 2, receptor 13
Vmn2r14 5 109214956 to 109224622 9666 - protein coding gene vomeronasal 2, receptor 14
Gm8473 5 109236877 to 109238530 1653 + pseudogene predicted gene 8473
Vmn2r15 5 109286269 to 109297556 11287 - protein coding gene vomeronasal 2, receptor 15
Vmn2r16 5 109330381 to 109364481 34100 + protein coding gene vomeronasal 2, receptor 16
Gm7171 5 109400644 to 109402077 1433 + pseudogene predicted gene 7171
Vmn2r17 5 109420013 to 109453387 33374 + protein coding gene vomeronasal 2, receptor 17
Tssr52468 5 109461282 to 109461294 12 - TSS region transcription start site region 52468
Gm18555 5 109473402 to 109473979 577 + pseudogene predicted gene, 18555
Gm8488 5 109527463 to 109529231 1768 - pseudogene predicted gene 8488
Tssr52469 5 109529546 to 109529548 2 - TSS region transcription start site region 52469
Tssr47859 5 109547327 to 109547336 9 + TSS region transcription start site region 47859
Cpgi16211 5 109550273 to 109550518 245 CpG island CpG island 16211
Cpgi16212 5 109551357 to 109551898 541 CpG island CpG island 16212
Gm8493 5 109551892 to 109554156 2264 - pseudogene predicted gene 8493
Cpgi16213 5 109553052 to 109553221 169 CpG island CpG island 16213
Tssr52470 5 109553184 to 109553216 32 - TSS region transcription start site region 52470
Crlf2 5 109554709 to 109558993 4284 - protein coding gene cytokine receptor-like factor 2
Cpgi16214 5 109555309 to 109558004 2695 CpG island CpG island 16214
Tssr52471 5 109555536 to 109555547 11 - TSS region transcription start site region 52471
Tssr52472 5 109555556 to 109555584 28 - TSS region transcription start site region 52472
Tssr52473 5 109556530 to 109556553 23 - TSS region transcription start site region 52473
Tssr52474 5 109557799 to 109557805 6 - TSS region transcription start site region 52474
Cpgi16215 5 109558344 to 109559217 873 CpG island CpG island 16215
Tssr1582 5 109558907 to 109558922 15 - TSS region transcription start site region 1582
Tssr52475 5 109558945 to 109558956 11 - TSS region transcription start site region 52475
Tssr52476 5 109558957 to 109559014 57 - TSS region transcription start site region 52476
Vmn2r-ps22 5 109566230 to 109573269 7039 - pseudogene vomeronasal 2, receptor, pseudogene 22
Vmn2r-ps23 5 109578019 to 109578589 570 - pseudogene vomeronasal 2, receptor, pseudogene 23
Gm28000 5 109599079 to 109599163 84 + unclassified non-coding RNA gene predicted gene, 28000
Tssr47860 5 109600941 to 109600946 5 + TSS region transcription start site region 47860
5430403G16Rik 5 109674545 to 109691041 16496 - protein coding gene RIKEN cDNA 5430403G16 gene
Afw16 5 109682300 to 109682419 119 QTL abdominal fat weight QTL 16
D5Mit314 5 109682300 to 109682419 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 314
Cpgi16216 5 109690646 to 109690843 197 CpG island CpG island 16216
Tssr52477 5 109690786 to 109690813 27 - TSS region transcription start site region 52477
Tssr52478 5 109690819 to 109690857 38 - TSS region transcription start site region 52478
4930522L14Rik 5 109735990 to 109751886 15896 - protein coding gene RIKEN cDNA 4930522L14 gene
Tssr52479 5 109751658 to 109751719 61 - TSS region transcription start site region 52479
Gm8508 5 109757525 to 109757887 362 - pseudogene predicted gene 8508
A430073D23Rik 5 109769407 to 109796298 26891 - lincRNA gene RIKEN cDNA A430073D23 gene
Cpgi16217 5 109795997 to 109796257 260 CpG island CpG island 16217
Tssr52480 5 109796270 to 109796286 16 - TSS region transcription start site region 52480
Gm10416 5 109833501 to 109834142 641 - pseudogene predicted pseudogene 10416
Tssr52481 5 109845002 to 109845009 7 - TSS region transcription start site region 52481
Tssr52482 5 109845018 to 109845058 40 - TSS region transcription start site region 52482
Gm35089 5 109859190 to 109866410 7220 - lncRNA gene predicted gene, 35089