Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:107382696-107812731

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brdt 5 107331159 to 107387058 55899 + protein coding gene bromodomain, testis-specific
Gm42902 5 107392731 to 107403480 10749 - antisense lncRNA gene predicted gene 42902
n-R5s173 5 107401319 to 107401437 118 + rRNA gene nuclear encoded rRNA 5S 173
Cpgi16184 5 107402956 to 107404052 1096 CpG island CpG island 16184
Ephx4 5 107403513 to 107430035 26522 + protein coding gene epoxide hydrolase 4
Tssr47766 5 107403524 to 107403534 10 + TSS region transcription start site region 47766
Tssr47767 5 107403591 to 107403611 20 + TSS region transcription start site region 47767
Tssr52371 5 107403620 to 107403638 18 - TSS region transcription start site region 52371
Gm17202 5 107404823 to 107431910 27087 - antisense lncRNA gene predicted gene 17202
Tssr52372 5 107406361 to 107406386 25 - TSS region transcription start site region 52372
D5Mit239 5 107413140 to 107413285 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 239
Cfsw2 5 107413140 to 107413285 145 QTL cystic fibrosis survival to weaning 2
Hycdc 5 107413140 to 107413285 145 QTL hypercapnic duty cycle
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
Tssr47768 5 107431541 to 107431558 17 + TSS region transcription start site region 47768
Lpcat2b 5 107431549 to 107435039 3490 + protein coding gene lysophosphatidylcholine acyltransferase 2B
Tssr47769 5 107431565 to 107431571 6 + TSS region transcription start site region 47769
Tssr52373 5 107431874 to 107431880 6 - TSS region transcription start site region 52373
Tssr52374 5 107431934 to 107431940 6 - TSS region transcription start site region 52374
Cpgi16185 5 107437660 to 107438467 807 CpG island CpG island 16185
Tssr52375 5 107437763 to 107437781 18 - TSS region transcription start site region 52375
Tssr47770 5 107437908 to 107437991 83 + TSS region transcription start site region 47770
Btbd8 5 107437997 to 107491596 53599 + protein coding gene BTB (POZ) domain containing 8
Gm33885 5 107461553 to 107472079 10526 - lncRNA gene predicted gene, 33885
Gm9727 5 107478526 to 107479080 554 - pseudogene predicted gene 9727
Tssr52376 5 107478772 to 107478776 4 - TSS region transcription start site region 52376
Tssr47771 5 107484766 to 107484768 2 + TSS region transcription start site region 47771
Tssr47772 5 107497718 to 107497759 41 + TSS region transcription start site region 47772
A830010M20Rik 5 107497745 to 107512556 14811 + protein coding gene RIKEN cDNA A830010M20 gene
Tssr47773 5 107497762 to 107497802 40 + TSS region transcription start site region 47773
Tssr47774 5 107497874 to 107497885 11 + TSS region transcription start site region 47774
Gm42669 5 107507621 to 107580596 72975 + protein coding gene predicted gene 42669
1700028K03Rik 5 107534711 to 107551542 16831 + protein coding gene RIKEN cDNA 1700028K03 gene
Tssr47775 5 107534715 to 107534732 17 + TSS region transcription start site region 47775
Tssr47776 5 107534738 to 107534761 23 + TSS region transcription start site region 47776
Glmn 5 107548967 to 107597888 48921 - protein coding gene glomulin, FKBP associated protein
Cpgi16186 5 107597213 to 107598152 939 CpG island CpG island 16186
Rpap2 5 107597373 to 107661838 64465 + protein coding gene RNA polymerase II associated protein 2
Tssr52377 5 107597533 to 107597545 12 - TSS region transcription start site region 52377
Tssr52378 5 107597595 to 107597625 30 - TSS region transcription start site region 52378
Tssr47777 5 107597696 to 107597731 35 + TSS region transcription start site region 47777
Tssr47778 5 107597741 to 107597756 15 + TSS region transcription start site region 47778
Tssr47779 5 107597760 to 107597784 24 + TSS region transcription start site region 47779
A930041C12Rik 5 107630250 to 107633850 3600 - antisense lncRNA gene RIKEN cDNA A930041C12 gene
5830490A12Rik 5 107655679 to 107657434 1755 unclassified gene RIKEN cDNA 5830490A12 gene
Gm26692 5 107659461 to 107688010 28549 - lincRNA gene predicted gene, 26692
Cpgi16187 5 107687885 to 107688344 459 CpG island CpG island 16187
Tssr52379 5 107687990 to 107688025 35 - TSS region transcription start site region 52379
Tssr47780 5 107688158 to 107688179 21 + TSS region transcription start site region 47780
5830411K02Rik 5 107688171 to 107689167 996 + unclassified gene RIKEN cDNA 5830411K02 gene
4930428O21Rik 5 107698212 to 107703480 5268 - lincRNA gene RIKEN cDNA 4930428O21 gene
Gfi1 5 107716655 to 107726031 9376 - protein coding gene growth factor independent 1 transcription repressor
Cpgi16188 5 107720822 to 107722035 1213 CpG island CpG island 16188
Tssr52380 5 107721116 to 107721120 4 - TSS region transcription start site region 52380
Cpgi16189 5 107723168 to 107727072 3904 CpG island CpG island 16189
Tssr52381 5 107723954 to 107723974 20 - TSS region transcription start site region 52381
Tssr52382 5 107724074 to 107724109 35 - TSS region transcription start site region 52382
Tssr47781 5 107724196 to 107724213 17 + TSS region transcription start site region 47781
Tssr47782 5 107725159 to 107725169 10 + TSS region transcription start site region 47782
A430072P03Rik 5 107725291 to 107728801 3510 + unclassified non-coding RNA gene RIKEN cDNA A430072P03 gene
Tssr52383 5 107725366 to 107725377 11 - TSS region transcription start site region 52383
Tssr52384 5 107725410 to 107725422 12 - TSS region transcription start site region 52384
Tssr52385 5 107725442 to 107725458 16 - TSS region transcription start site region 52385
Tssr52386 5 107725483 to 107725512 29 - TSS region transcription start site region 52386
Tssr47783 5 107725933 to 107725940 7 + TSS region transcription start site region 47783
Tssr52387 5 107725987 to 107726014 27 - TSS region transcription start site region 52387
Tssr52388 5 107726017 to 107726040 23 - TSS region transcription start site region 52388
Tssr47784 5 107726057 to 107726067 10 + TSS region transcription start site region 47784
Tssr47785 5 107726141 to 107726167 26 + TSS region transcription start site region 47785
Tssr47786 5 107726874 to 107726880 6 + TSS region transcription start site region 47786
Tssr52389 5 107731466 to 107731495 29 - TSS region transcription start site region 52389
Gm42147 5 107737629 to 107741264 3635 - lncRNA gene predicted gene, 42147
Evi5 5 107744795 to 107875107 130312 - protein coding gene ecotropic viral integration site 5
Tssr47787 5 107755097 to 107755100 3 + TSS region transcription start site region 47787
Tssr52390 5 107787255 to 107787259 4 - TSS region transcription start site region 52390
Gm43593 5 107806362 to 107807707 1345 - unclassified gene predicted gene 43593