Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:107258140-112441920

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809 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tgfbr3 5 107106570 to 107289595 183025 - protein coding gene transforming growth factor, beta receptor III
Cpgi16181 5 107288381 to 107289929 1548 CpG island CpG island 16181
Tssr52365 5 107289289 to 107289300 11 - TSS region transcription start site region 52365
Tssr52366 5 107289363 to 107289378 15 - TSS region transcription start site region 52366
Tssr52367 5 107289432 to 107289443 11 - TSS region transcription start site region 52367
Tssr52368 5 107289496 to 107289525 29 - TSS region transcription start site region 52368
Tssr52369 5 107289530 to 107289551 21 - TSS region transcription start site region 52369
Tssr52370 5 107289561 to 107289637 76 - TSS region transcription start site region 52370
Gm22557 5 107302946 to 107303047 101 + snRNA gene predicted gene, 22557
Cpgi16182 5 107330914 to 107331452 538 CpG island CpG island 16182
Tssr47760 5 107331137 to 107331146 9 + TSS region transcription start site region 47760
Tssr47761 5 107331157 to 107331197 40 + TSS region transcription start site region 47761
Brdt 5 107331159 to 107387058 55899 + protein coding gene bromodomain, testis-specific
Tssr47762 5 107333118 to 107333134 16 + TSS region transcription start site region 47762
Cpgi16183 5 107359440 to 107360025 585 CpG island CpG island 16183
Tssr47763 5 107359543 to 107359586 43 + TSS region transcription start site region 47763
Tssr47764 5 107359606 to 107359618 12 + TSS region transcription start site region 47764
Tssr47765 5 107359826 to 107359849 23 + TSS region transcription start site region 47765
Gm8152 5 107381381 to 107382017 636 - pseudogene predicted gene 8152
Gm42902 5 107392731 to 107403480 10749 - antisense lncRNA gene predicted gene 42902
n-R5s173 5 107401319 to 107401437 118 + rRNA gene nuclear encoded rRNA 5S 173
Cpgi16184 5 107402956 to 107404052 1096 CpG island CpG island 16184
Ephx4 5 107403513 to 107430035 26522 + protein coding gene epoxide hydrolase 4
Tssr47766 5 107403524 to 107403534 10 + TSS region transcription start site region 47766
Tssr47767 5 107403591 to 107403611 20 + TSS region transcription start site region 47767
Tssr52371 5 107403620 to 107403638 18 - TSS region transcription start site region 52371
Gm17202 5 107404823 to 107431910 27087 - antisense lncRNA gene predicted gene 17202
Tssr52372 5 107406361 to 107406386 25 - TSS region transcription start site region 52372
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
Hycdc 5 107413140 to 107413285 145 QTL hypercapnic duty cycle
Cfsw2 5 107413140 to 107413285 145 QTL cystic fibrosis survival to weaning 2
D5Mit239 5 107413140 to 107413285 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 239
Tssr47768 5 107431541 to 107431558 17 + TSS region transcription start site region 47768
Lpcat2b 5 107431549 to 107435039 3490 + protein coding gene lysophosphatidylcholine acyltransferase 2B
Tssr47769 5 107431565 to 107431571 6 + TSS region transcription start site region 47769
Tssr52373 5 107431874 to 107431880 6 - TSS region transcription start site region 52373
Tssr52374 5 107431934 to 107431940 6 - TSS region transcription start site region 52374
Cpgi16185 5 107437660 to 107438467 807 CpG island CpG island 16185
Tssr52375 5 107437763 to 107437781 18 - TSS region transcription start site region 52375
Tssr47770 5 107437908 to 107437991 83 + TSS region transcription start site region 47770
Btbd8 5 107437997 to 107491596 53599 + protein coding gene BTB (POZ) domain containing 8
Gm33885 5 107461553 to 107472079 10526 - lncRNA gene predicted gene, 33885
Gm9727 5 107478526 to 107479080 554 - pseudogene predicted gene 9727
Tssr52376 5 107478772 to 107478776 4 - TSS region transcription start site region 52376
Tssr47771 5 107484766 to 107484768 2 + TSS region transcription start site region 47771
Tssr47772 5 107497718 to 107497759 41 + TSS region transcription start site region 47772
A830010M20Rik 5 107497745 to 107512556 14811 + protein coding gene RIKEN cDNA A830010M20 gene
Tssr47773 5 107497762 to 107497802 40 + TSS region transcription start site region 47773
Tssr47774 5 107497874 to 107497885 11 + TSS region transcription start site region 47774
Gm42669 5 107507621 to 107580596 72975 + protein coding gene predicted gene 42669
1700028K03Rik 5 107534711 to 107551542 16831 + protein coding gene RIKEN cDNA 1700028K03 gene
Tssr47775 5 107534715 to 107534732 17 + TSS region transcription start site region 47775
Tssr47776 5 107534738 to 107534761 23 + TSS region transcription start site region 47776
Glmn 5 107548967 to 107597888 48921 - protein coding gene glomulin, FKBP associated protein
Cpgi16186 5 107597213 to 107598152 939 CpG island CpG island 16186
Rpap2 5 107597373 to 107661838 64465 + protein coding gene RNA polymerase II associated protein 2
Tssr52377 5 107597533 to 107597545 12 - TSS region transcription start site region 52377
Tssr52378 5 107597595 to 107597625 30 - TSS region transcription start site region 52378
Tssr47777 5 107597696 to 107597731 35 + TSS region transcription start site region 47777
Tssr47778 5 107597741 to 107597756 15 + TSS region transcription start site region 47778
Tssr47779 5 107597760 to 107597784 24 + TSS region transcription start site region 47779
A930041C12Rik 5 107630250 to 107633850 3600 - antisense lncRNA gene RIKEN cDNA A930041C12 gene
5830490A12Rik 5 107655679 to 107657434 1755 unclassified gene RIKEN cDNA 5830490A12 gene
Gm26692 5 107659461 to 107688010 28549 - lincRNA gene predicted gene, 26692
Cpgi16187 5 107687885 to 107688344 459 CpG island CpG island 16187
Tssr52379 5 107687990 to 107688025 35 - TSS region transcription start site region 52379
Tssr47780 5 107688158 to 107688179 21 + TSS region transcription start site region 47780
5830411K02Rik 5 107688171 to 107689167 996 + unclassified gene RIKEN cDNA 5830411K02 gene
4930428O21Rik 5 107698212 to 107703480 5268 - lincRNA gene RIKEN cDNA 4930428O21 gene
Gfi1 5 107716655 to 107726031 9376 - protein coding gene growth factor independent 1 transcription repressor
Cpgi16188 5 107720822 to 107722035 1213 CpG island CpG island 16188
Tssr52380 5 107721116 to 107721120 4 - TSS region transcription start site region 52380
Cpgi16189 5 107723168 to 107727072 3904 CpG island CpG island 16189
Tssr52381 5 107723954 to 107723974 20 - TSS region transcription start site region 52381
Tssr52382 5 107724074 to 107724109 35 - TSS region transcription start site region 52382
Tssr47781 5 107724196 to 107724213 17 + TSS region transcription start site region 47781
Tssr47782 5 107725159 to 107725169 10 + TSS region transcription start site region 47782
A430072P03Rik 5 107725291 to 107728801 3510 + unclassified non-coding RNA gene RIKEN cDNA A430072P03 gene
Tssr52383 5 107725366 to 107725377 11 - TSS region transcription start site region 52383
Tssr52384 5 107725410 to 107725422 12 - TSS region transcription start site region 52384
Tssr52385 5 107725442 to 107725458 16 - TSS region transcription start site region 52385
Tssr52386 5 107725483 to 107725512 29 - TSS region transcription start site region 52386
Tssr47783 5 107725933 to 107725940 7 + TSS region transcription start site region 47783
Tssr52387 5 107725987 to 107726014 27 - TSS region transcription start site region 52387
Tssr52388 5 107726017 to 107726040 23 - TSS region transcription start site region 52388
Tssr47784 5 107726057 to 107726067 10 + TSS region transcription start site region 47784
Tssr47785 5 107726141 to 107726167 26 + TSS region transcription start site region 47785
Tssr47786 5 107726874 to 107726880 6 + TSS region transcription start site region 47786
Tssr52389 5 107731466 to 107731495 29 - TSS region transcription start site region 52389
Gm42147 5 107737629 to 107741264 3635 - lncRNA gene predicted gene, 42147
Evi5 5 107744795 to 107875107 130312 - protein coding gene ecotropic viral integration site 5
Tssr47787 5 107755097 to 107755100 3 + TSS region transcription start site region 47787
Tssr52390 5 107787255 to 107787259 4 - TSS region transcription start site region 52390
Gm43593 5 107806362 to 107807707 1345 - unclassified gene predicted gene 43593
Cpgi16190 5 107830085 to 107830387 302 CpG island CpG island 16190
Tssr47788 5 107830154 to 107830170 16 + TSS region transcription start site region 47788
Ube2d2b 5 107830162 to 107831777 1615 + protein coding gene ubiquitin-conjugating enzyme E2D 2B
Tssr47789 5 107830223 to 107830234 11 + TSS region transcription start site region 47789
Tssr47790 5 107830244 to 107830259 15 + TSS region transcription start site region 47790
Tssr47791 5 107830262 to 107830312 50 + TSS region transcription start site region 47791
Tssr52391 5 107837475 to 107837491 16 - TSS region transcription start site region 52391
Tssr52392 5 107837500 to 107837501 1 - TSS region transcription start site region 52392
Gm16007 5 107844390 to 107844675 285 + pseudogene predicted gene 16007
Gm42149 5 107850069 to 107853022 2953 - lncRNA gene predicted gene, 42149
Tssr52393 5 107856935 to 107856938 3 - TSS region transcription start site region 52393
Tssr52394 5 107859210 to 107859212 2 - TSS region transcription start site region 52394
Tssr52395 5 107868178 to 107868183 5 - TSS region transcription start site region 52395
Cpgi16191 5 107868338 to 107869462 1124 CpG island CpG island 16191
Gm43592 5 107868474 to 107869638 1164 + unclassified gene predicted gene 43592
Tssr52396 5 107868974 to 107868990 16 - TSS region transcription start site region 52396
Tssr52397 5 107869012 to 107869056 44 - TSS region transcription start site region 52397
Tssr52398 5 107869100 to 107869123 23 - TSS region transcription start site region 52398
Tssr52399 5 107869132 to 107869143 11 - TSS region transcription start site region 52399
Tssr52400 5 107869153 to 107869175 22 - TSS region transcription start site region 52400
Tssr52401 5 107869293 to 107869310 17 - TSS region transcription start site region 52401
Tssr52402 5 107875035 to 107875073 38 - TSS region transcription start site region 52402
Cpgi16192 5 107900394 to 107901386 992 CpG island CpG island 16192
Tssr47792 5 107900500 to 107900509 9 + TSS region transcription start site region 47792
Rpl5 5 107900528 to 107909005 8477 + protein coding gene ribosomal protein L5
Tssr47793 5 107900532 to 107900577 45 + TSS region transcription start site region 47793
Tssr47794 5 107900750 to 107900792 42 + TSS region transcription start site region 47794
Tssr47795 5 107900859 to 107900879 20 + TSS region transcription start site region 47795
Tssr47796 5 107904553 to 107904556 3 + TSS region transcription start site region 47796
Snord21 5 107904555 to 107904648 93 + snoRNA gene small nucleolar RNA, C/D box 21
Tssr47797 5 107905175 to 107905178 3 + TSS region transcription start site region 47797
Gm22270 5 107905177 to 107905308 131 + snoRNA gene predicted gene, 22270
Tssr47798 5 107905344 to 107905353 9 + TSS region transcription start site region 47798
Gm26387 5 107907345 to 107907476 131 + snoRNA gene predicted gene, 26387
Dipk1a 5 107908053 to 107987085 79032 - protein coding gene divergent protein kinase domain 1A
Tssr47799 5 107941487 to 107941513 26 + TSS region transcription start site region 47799
Tssr52403 5 107967796 to 107967800 4 - TSS region transcription start site region 52403
Tssr52404 5 107972864 to 107972879 15 - TSS region transcription start site region 52404
Tssr52405 5 107976220 to 107976223 3 - TSS region transcription start site region 52405
D5Mit382 5 107984815 to 107984907 92 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-382
Cpgi16193 5 107986291 to 107987867 1576 CpG island CpG island 16193
Tssr52406 5 107987003 to 107987055 52 - TSS region transcription start site region 52406
Gm42150 5 107991420 to 108002804 11384 - lncRNA gene predicted gene, 42150
Tssr47800 5 108001205 to 108001220 15 + TSS region transcription start site region 47800
Gm9850 5 108002260 to 108002486 226 + pseudogene predicted gene 9850
Rps19-ps8 5 108055495 to 108055916 421 - pseudogene ribosomal protein S19, pseudogene 8
Tssr47801 5 108060733 to 108060749 16 + TSS region transcription start site region 47801
Cpgi16194 5 108065394 to 108066073 679 CpG island CpG island 16194
Tssr52407 5 108065518 to 108065540 22 - TSS region transcription start site region 52407
Tssr47802 5 108065667 to 108065682 15 + TSS region transcription start site region 47802
Mtf2 5 108065674 to 108109004 43330 + protein coding gene metal response element binding transcription factor 2
Tssr47803 5 108065696 to 108065738 42 + TSS region transcription start site region 47803
Tssr47804 5 108065746 to 108065767 21 + TSS region transcription start site region 47804
Tssr52408 5 108066210 to 108066226 16 - TSS region transcription start site region 52408
Tssr47805 5 108066369 to 108066391 22 + TSS region transcription start site region 47805
Tssr47806 5 108077949 to 108077968 19 + TSS region transcription start site region 47806
Tssr47807 5 108086092 to 108086099 7 + TSS region transcription start site region 47807
Tmed5 5 108121627 to 108132626 10999 - protein coding gene transmembrane p24 trafficking protein 5
Tssr52409 5 108122109 to 108122142 33 - TSS region transcription start site region 52409
Cpgi16195 5 108131969 to 108133136 1167 CpG island CpG island 16195
Tssr52410 5 108132490 to 108132503 13 - TSS region transcription start site region 52410
Tssr52411 5 108132513 to 108132538 25 - TSS region transcription start site region 52411
Tssr52412 5 108132541 to 108132570 29 - TSS region transcription start site region 52412
Tssr52413 5 108132577 to 108132588 11 - TSS region transcription start site region 52413
Ccdc18 5 108132799 to 108232951 100152 + protein coding gene coiled-coil domain containing 18
Tssr47808 5 108132803 to 108132884 81 + TSS region transcription start site region 47808
Tssr47809 5 108132885 to 108132896 11 + TSS region transcription start site region 47809
Gm7118 5 108145226 to 108146907 1681 - pseudogene predicted gene 7118
Gm8190 5 108154245 to 108154830 585 - pseudogene predicted gene 8190
Tssr47810 5 108161100 to 108161126 26 + TSS region transcription start site region 47810
Gm43083 5 108210959 to 108211434 475 - pseudogene predicted gene 43083
Cpgi16196 5 108268452 to 108269730 1278 CpG island CpG island 16196
Tssr47811 5 108268897 to 108268924 27 + TSS region transcription start site region 47811
Dr1 5 108268897 to 108280521 11624 + protein coding gene down-regulator of transcription 1
Tssr47812 5 108268929 to 108268980 51 + TSS region transcription start site region 47812
Tssr47813 5 108269290 to 108269302 12 + TSS region transcription start site region 47813
Tssr47814 5 108269419 to 108269441 22 + TSS region transcription start site region 47814
Tssr47815 5 108269444 to 108269470 26 + TSS region transcription start site region 47815
Tssr47816 5 108269647 to 108269660 13 + TSS region transcription start site region 47816
Tssr47817 5 108269663 to 108269677 14 + TSS region transcription start site region 47817
Tssr47818 5 108279031 to 108279044 13 + TSS region transcription start site region 47818
Tssr47819 5 108279131 to 108279143 12 + TSS region transcription start site region 47819
Tssr47820 5 108279427 to 108279453 26 + TSS region transcription start site region 47820
Tssr47821 5 108279483 to 108279498 15 + TSS region transcription start site region 47821
Tssr47822 5 108279509 to 108279521 12 + TSS region transcription start site region 47822
Tssr47823 5 108279630 to 108279643 13 + TSS region transcription start site region 47823
D5Mit315 5 108305388 to 108305508 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 315
Gm43081 5 108311370 to 108312749 1379 - unclassified gene predicted gene 43081
Cpgi16197 5 108312299 to 108313282 983 CpG island CpG island 16197
Pigg 5 108312782 to 108349355 36573 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class G
Tssr47824 5 108312784 to 108312823 39 + TSS region transcription start site region 47824
9330198I05Rik 5 108360187 to 108363885 3698 + lincRNA gene RIKEN cDNA 9330198I05 gene
Gm42518 5 108364037 to 108364974 937 - lincRNA gene predicted gene 42518
Gm42517 5 108366073 to 108367922 1849 - protein coding gene predicted gene 42517
Cpgi16198 5 108366434 to 108369682 3248 CpG island CpG island 16198
Tssr47825 5 108367732 to 108367774 42 + TSS region transcription start site region 47825
Tssr52414 5 108367895 to 108367922 27 - TSS region transcription start site region 52414
Gm10419 5 108367994 to 108374478 6484 + lincRNA gene predicted gene 10419
Tssr52415 5 108369406 to 108369431 25 - TSS region transcription start site region 52415
Pde6b 5 108388373 to 108431743 43370 + protein coding gene phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Tssr47826 5 108388376 to 108388387 11 + TSS region transcription start site region 47826
Tssr47827 5 108388405 to 108388411 6 + TSS region transcription start site region 47827
Tssr47828 5 108388412 to 108388434 22 + TSS region transcription start site region 47828
Tssr47829 5 108388437 to 108388440 3 + TSS region transcription start site region 47829
Tssr47830 5 108388446 to 108388453 7 + TSS region transcription start site region 47830
Cpgi16199 5 108388625 to 108388829 204 CpG island CpG island 16199