Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:90020000-99980000

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565 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abbp2 4 53550839 to 93875068 40324229 QTL A/J and C57BL/6 blood pressure 2
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Habiir3 4 83838893 to 94405503 10566610 QTL hyperoxic acute lung injury imprinted region 3
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
Gm12629 4 90185527 to 90190009 4482 + lincRNA gene predicted gene 12629
Zfp352 4 90218820 to 90225687 6867 + protein coding gene zinc finger protein 352
Gm12633 4 90359625 to 90361314 1689 - pseudogene predicted gene 12633
Gm12634 4 90368731 to 90369722 991 + pseudogene predicted gene 12634
Gm12635 4 90452874 to 90453625 751 + pseudogene predicted gene 12635
Gm12636 4 90543747 to 90544370 623 - pseudogene predicted gene 12636
Gm12632 4 90856883 to 90857377 494 + pseudogene predicted gene 12632
Gm25244 4 90997862 to 90997993 131 - snoRNA gene predicted gene, 25244
Gm12643 4 91037884 to 91038199 315 + pseudogene predicted gene 12643
D4Mit165 4 91117256 to 91117397 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 165
Bulb1 4 91145650 to 91145792 142 QTL bulb size 1
D4Mit186 4 91145650 to 91145792 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 186
Gm12644 4 91156682 to 91157287 605 + pseudogene predicted gene 12644
A730080H06Rik 4 91211532 to 91246042 34510 - lncRNA gene RIKEN cDNA A730080H06 gene
Elavl2 4 91250766 to 91400059 149293 - protein coding gene ELAV like RNA binding protein 1
Tssr42415 4 91363878 to 91363882 4 - TSS region transcription start site region 42415
Gm12653 4 91365379 to 91365939 560 + pseudogene predicted gene 12653
Cpgi14444 4 91370907 to 91372606 1699 CpG island CpG island 14444
Tssr42416 4 91371946 to 91371972 26 - TSS region transcription start site region 42416
Tssr42417 4 91371984 to 91372000 16 - TSS region transcription start site region 42417
Tssr42418 4 91372028 to 91372047 19 - TSS region transcription start site region 42418
Cpgi14445 4 91372895 to 91373081 186 CpG island CpG island 14445
Mir6402 4 91373284 to 91373363 79 - miRNA gene microRNA 6402
Cpgi14446 4 91374350 to 91375188 838 CpG island CpG island 14446
Cpgi14447 4 91376305 to 91376694 389 CpG island CpG island 14447
Tssr42419 4 91376315 to 91376330 15 - TSS region transcription start site region 42419
Tssr42420 4 91376331 to 91376355 24 - TSS region transcription start site region 42420
Tssr42421 4 91376362 to 91376377 15 - TSS region transcription start site region 42421
Tssr42422 4 91376433 to 91376477 44 - TSS region transcription start site region 42422
Tssr42423 4 91376490 to 91376502 12 - TSS region transcription start site region 42423
Tssr42424 4 91399996 to 91400007 11 - TSS region transcription start site region 42424
Cpgi14448 4 91400484 to 91400877 393 CpG island CpG island 14448
D4Mit329 4 91454783 to 91454893 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 329
Gm40202 4 91496622 to 91536487 39865 + lncRNA gene predicted gene, 40202
Plep 4 91556462 to 91556746 284 QTL plasma lepin levels
Sluc43d 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43d
Sluc43i 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43i
Sluc43c 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43c
Sluc43h 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43h
Sluc43f 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43f
Sluc43e 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43e
D4Mit15 4 91556462 to 91556746 284 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 15
Sluc43g 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43g
Sluc43b 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43b
Sluc43a 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43a
Gm12668 4 91626589 to 91630139 3550 + lincRNA gene predicted gene 12668
Gm12670 4 91646315 to 91651152 4837 + lincRNA gene predicted gene 12670
Gm12667 4 91708638 to 91709969 1331 + pseudogene predicted gene 12667
Gm12669 4 91805550 to 91806555 1005 - pseudogene predicted gene 12669
Gm12671 4 91851668 to 91852669 1001 - pseudogene predicted gene 12671
4930577H14Rik 4 91938854 to 91939952 1098 - lincRNA gene RIKEN cDNA 4930577H14 gene
Tssr42425 4 91939947 to 91939957 10 - TSS region transcription start site region 42425
Tssr37791 4 91940014 to 91940030 16 + TSS region transcription start site region 37791
Izumo3 4 92144318 to 92147221 2903 - protein coding gene IZUMO family member 3
Tssr42426 4 92147185 to 92147227 42 - TSS region transcription start site region 42426
Gm40203 4 92147281 to 92150948 3667 + lncRNA gene predicted gene, 40203
Tssr37792 4 92147300 to 92147306 6 + TSS region transcription start site region 37792
Gm12666 4 92190685 to 92191336 651 - protein coding gene predicted gene 12666
Gm40204 4 92241764 to 92266240 24476 + lncRNA gene predicted gene, 40204
Tssr42427 4 92339842 to 92339848 6 - TSS region transcription start site region 42427
Gm12638 4 92373051 to 92373348 297 - pseudogene predicted gene 12638
Gm12637 4 92528551 to 92548304 19753 + lincRNA gene predicted gene 12637
D4Mit144 4 92539786 to 92539915 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 144
D4Dcr12 4 92805212 to 92805308 96 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 12
Gm22605 4 92866475 to 92866582 107 - snRNA gene predicted gene, 22605
Gm12639 4 92970244 to 92970736 492 - pseudogene predicted gene 12639
Gm12641 4 93106988 to 93109914 2926 + pseudogene predicted gene 12641
D4Mit230 4 93136637 to 93136785 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 230
Gm12642 4 93265432 to 93266288 856 - pseudogene predicted gene 12642
Tusc1 4 93334148 to 93335511 1363 - protein coding gene tumor suppressor candidate 1
Cpgi14449 4 93334481 to 93335938 1457 CpG island CpG island 14449
Tssr1230 4 93334777 to 93334816 39 + TSS region transcription start site region 1230
Tssr37793 4 93334832 to 93334845 13 + TSS region transcription start site region 37793
Tssr42428 4 93335111 to 93335122 11 - TSS region transcription start site region 42428
Tssr42429 4 93335380 to 93335423 43 - TSS region transcription start site region 42429
Tssr42430 4 93335425 to 93335436 11 - TSS region transcription start site region 42430
Tssr42431 4 93335510 to 93335548 38 - TSS region transcription start site region 42431
Tssr42432 4 93335814 to 93335825 11 - TSS region transcription start site region 42432
Tssr42433 4 93335826 to 93335860 34 - TSS region transcription start site region 42433
Gm31828 4 93370406 to 93481395 110989 - lncRNA gene predicted gene, 31828
Gm12649 4 93453258 to 93671070 217812 - lincRNA gene predicted gene 12649
Tssr42434 4 93481355 to 93481390 35 - TSS region transcription start site region 42434
Gm23443 4 93545150 to 93545277 127 - snoRNA gene predicted gene, 23443
Gm12640 4 93599186 to 93599495 309 + pseudogene predicted gene 12640
Gm24796 4 93600979 to 93601085 106 + snRNA gene predicted gene, 24796
Gm22619 4 93745888 to 93745997 109 - miRNA gene predicted gene, 22619
Gm12650 4 93802333 to 93802590 257 + pseudogene predicted gene 12650
Gm32035 4 93830417 to 93864235 33818 - lncRNA gene predicted gene, 32035
D4Mit166.2 4 93874839 to 93874995 156 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 166.2
D4Mit166 4 93874870 to 93875068 198 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 166
Gauc 4 93874870 to 93875068 198 QTL glucose area under curve
Gm12647 4 94061373 to 94061637 264 + pseudogene predicted gene 12647
Gm12648 4 94089576 to 94425588 336012 - lincRNA gene predicted gene 12648
Gm23836 4 94098290 to 94098418 128 + snoRNA gene predicted gene, 23836
Gm18005 4 94104039 to 94104837 798 - pseudogene predicted gene, 18005
Tssr42435 4 94327852 to 94327857 5 - TSS region transcription start site region 42435
Tssr42436 4 94329428 to 94329432 4 - TSS region transcription start site region 42436
Tssr42437 4 94331592 to 94331602 10 - TSS region transcription start site region 42437
Tssr42438 4 94331613 to 94331626 13 - TSS region transcription start site region 42438
Tssr1231 4 94331654 to 94331655 1 - TSS region transcription start site region 1231
Gm12654 4 94395658 to 94396244 586 + pseudogene predicted gene 12654
D4Mit145 4 94405373 to 94405503 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 145
Cpgi14450 4 94428880 to 94429177 297 CpG island CpG island 14450
Gm26410 4 94434224 to 94434484 260 - unclassified non-coding RNA gene predicted gene, 26410
Gm12655 4 94460931 to 94477180 16249 - unclassified non-coding RNA gene predicted gene 12655
Tssr42439 4 94477167 to 94477207 40 - TSS region transcription start site region 42439
Gm22804 4 94487883 to 94487983 100 + snoRNA gene predicted gene, 22804
D4Mit350 4 94495101 to 94495222 121 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 350
Gm12656 4 94496989 to 94497556 567 + pseudogene predicted gene 12656
Caap1 4 94500081 to 94556796 56715 - protein coding gene caspase activity and apoptosis inhibitor 1
Tssr42440 4 94533305 to 94533310 5 - TSS region transcription start site region 42440
Tssr42441 4 94555080 to 94555086 6 - TSS region transcription start site region 42441
Cpgi14451 4 94556183 to 94556969 786 CpG island CpG island 14451
Gm10306 4 94556546 to 94557078 532 + protein coding gene predicted gene 10306
Tssr42442 4 94556737 to 94556802 65 - TSS region transcription start site region 42442
Plaa 4 94567514 to 94603244 35730 - protein coding gene phospholipase A2, activating protein
Tssr42443 4 94569285 to 94569304 19 - TSS region transcription start site region 42443
Tssr42444 4 94587345 to 94587361 16 - TSS region transcription start site region 42444
Gm12657 4 94599385 to 94599795 410 + pseudogene predicted gene 12657
Cpgi14452 4 94602590 to 94603612 1022 CpG island CpG island 14452
Tssr42445 4 94603095 to 94603193 98 - TSS region transcription start site region 42445
Tssr42446 4 94603203 to 94603228 25 - TSS region transcription start site region 42446
Tssr42447 4 94603239 to 94603253 14 - TSS region transcription start site region 42447
Tssr37794 4 94603261 to 94603281 20 + TSS region transcription start site region 37794
Tssr37795 4 94603521 to 94603538 17 + TSS region transcription start site region 37795
Cpgi14453 4 94614322 to 94614924 602 CpG island CpG island 14453
Tssr37796 4 94614483 to 94614500 17 + TSS region transcription start site region 37796
Ift74 4 94614491 to 94693229 78738 + protein coding gene intraflagellar transport 74
Tssr37797 4 94614514 to 94614570 56 + TSS region transcription start site region 37797
Tssr37798 4 94614589 to 94614598 9 + TSS region transcription start site region 37798
Tssr37799 4 94624726 to 94624744 18 + TSS region transcription start site region 37799
Tssr37800 4 94627250 to 94627260 10 + TSS region transcription start site region 37800
Lrrc19 4 94636653 to 94650144 13491 - protein coding gene leucine rich repeat containing 19
Tssr37801 4 94642417 to 94642421 4 + TSS region transcription start site region 37801
Tssr42448 4 94650092 to 94650127 35 - TSS region transcription start site region 42448
Tssr42449 4 94650134 to 94650149 15 - TSS region transcription start site region 42449
Mir872 4 94665157 to 94665237 80 + miRNA gene microRNA 872
Gm40205 4 94721603 to 94732564 10961 + lncRNA gene predicted gene, 40205
Tssr37802 4 94735211 to 94735224 13 + TSS region transcription start site region 37802
Tssr37803 4 94739276 to 94739298 22 + TSS region transcription start site region 37803
Tek 4 94739289 to 94874976 135687 + protein coding gene TEK receptor tyrosine kinase
Tssr37804 4 94739448 to 94739455 7 + TSS region transcription start site region 37804
Tssr37805 4 94739462 to 94739484 22 + TSS region transcription start site region 37805
Tssr37806 4 94739493 to 94739513 20 + TSS region transcription start site region 37806
Tssr37807 4 94739522 to 94739537 15 + TSS region transcription start site region 37807
Tssr37808 4 94739565 to 94739587 22 + TSS region transcription start site region 37808
Tssr1232 4 94740018 to 94740021 3 + TSS region transcription start site region 1232
Tssr37809 4 94751583 to 94751586 3 + TSS region transcription start site region 37809
Tssr37810 4 94820769 to 94820785 16 + TSS region transcription start site region 37810
Tssr37811 4 94845748 to 94845752 4 + TSS region transcription start site region 37811
Eqtn 4 94907267 to 94928843 21576 - protein coding gene equatorin, sperm acrosome associated
Tssr42450 4 94928789 to 94928815 26 - TSS region transcription start site region 42450
Tssr42451 4 94928820 to 94928848 28 - TSS region transcription start site region 42451
Gm12693 4 94935621 to 94936103 482 + pseudogene predicted gene 12693
Mysm1 4 94942040 to 94979100 37060 - protein coding gene myb-like, SWIRM and MPN domains 1
Tssr42452 4 94945964 to 94945972 8 - TSS region transcription start site region 42452
Cpgi14454 4 94978654 to 94979444 790 CpG island CpG island 14454
Tssr42453 4 94979063 to 94979106 43 - TSS region transcription start site region 42453
Gm12694 4 94979301 to 95018964 39663 + antisense lncRNA gene predicted gene 12694
Gm12703 4 95029963 to 95048370 18407 - unclassified non-coding RNA gene predicted gene 12703
Gm12704 4 95039162 to 95039625 463 - pseudogene predicted gene 12704
Jun 4 95049036 to 95052222 3186 - protein coding gene jun proto-oncogene
Tssr42454 4 95049805 to 95049810 5 - TSS region transcription start site region 42454
Tssr42455 4 95049826 to 95049841 15 - TSS region transcription start site region 42455
Cpgi14455 4 95049906 to 95053388 3482 CpG island CpG island 14455
Tssr42456 4 95050429 to 95050445 16 - TSS region transcription start site region 42456
Tssr42457 4 95051174 to 95051210 36 - TSS region transcription start site region 42457
Tssr42458 4 95051261 to 95051312 51 - TSS region transcription start site region 42458
Junos 4 95051534 to 95167318 115784 + antisense lncRNA gene jun proto-oncogene, opposite strand
Tssr42459 4 95052170 to 95052181 11 - TSS region transcription start site region 42459
Tssr42460 4 95052188 to 95052207 19 - TSS region transcription start site region 42460
Tssr37812 4 95052560 to 95052573 13 + TSS region transcription start site region 37812
Tssr37813 4 95052857 to 95052873 16 + TSS region transcription start site region 37813
Tssr37814 4 95054091 to 95054092 1 + TSS region transcription start site region 37814
Tssr37815 4 95054677 to 95054681 4 + TSS region transcription start site region 37815
n-R5s189 4 95062650 to 95062763 113 + rRNA gene nuclear encoded rRNA 5S 189
D4Mit9 4 95069342 to 95069538 196 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 9
Sle2 4 95069342 to 95069538 196 QTL systemic lupus erythmatosus susceptibility 2
Tssr37816 4 95075752 to 95075791 39 + TSS region transcription start site region 37816
Cpgi14456 4 95075812 to 95076006 194 CpG island CpG island 14456
4930551L18Rik 4 95089083 to 95091419 2336 - lincRNA gene RIKEN cDNA 4930551L18 gene
Tssr37817 4 95093525 to 95093536 11 + TSS region transcription start site region 37817
Tssr37818 4 95104343 to 95104345 2 + TSS region transcription start site region 37818
Gm28096 4 95151740 to 95157503 5763 + sense intronic lncRNA gene predicted gene 28096
Cpgi14457 4 95160939 to 95161817 878 CpG island CpG island 14457
Tssr37819 4 95161463 to 95161490 27 + TSS region transcription start site region 37819
Tssr37820 4 95161513 to 95161522 9 + TSS region transcription start site region 37820
Tssr1233 4 95193292 to 95193326 34 + TSS region transcription start site region 1233
Gm12708 4 95193313 to 95209727 16414 + lincRNA gene predicted gene 12708
Gm32240 4 95196913 to 95208085 11172 - lncRNA gene predicted gene, 32240
Tssr42461 4 95215161 to 95215196 35 - TSS region transcription start site region 42461
Tssr37821 4 95215363 to 95215368 5 + TSS region transcription start site region 37821
Tssr37822 4 95215432 to 95215446 14 + TSS region transcription start site region 37822
Tssr37823 4 95215468 to 95215475 7 + TSS region transcription start site region 37823
Gm46863 4 95254826 to 95259161 4335 + pseudogene predicted gene, 46863
D4Mit358 4 95336187 to 95336348 161 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-358