Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:89254625-91466314

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Gm12606 4 89235699 to 89273403 37704 - lincRNA gene predicted gene 12606
Cpgi14435 4 89273087 to 89273758 671 CpG island CpG island 14435
Cdkn2a 4 89274473 to 89294619 20146 - protein coding gene cyclin dependent kinase inhibitor 2A
Tssr42404 4 89274576 to 89274583 7 - TSS region transcription start site region 42404
Cpgi14436 4 89274931 to 89275091 160 CpG island CpG island 14436
Cpgi14437 4 89276411 to 89277077 666 CpG island CpG island 14437
Cpgi14438 4 89281927 to 89282549 622 CpG island CpG island 14438
Tssr42405 4 89282113 to 89282151 38 - TSS region transcription start site region 42405
Tssr42406 4 89282152 to 89282161 9 - TSS region transcription start site region 42406
Tssr42407 4 89282181 to 89282188 7 - TSS region transcription start site region 42407
Cpgi14439 4 89294130 to 89295782 1652 CpG island CpG island 14439
Tssr42408 4 89294506 to 89294511 5 - TSS region transcription start site region 42408
Tssr42409 4 89294531 to 89294545 14 - TSS region transcription start site region 42409
Tssr42410 4 89294554 to 89294588 34 - TSS region transcription start site region 42410
Tssr42411 4 89294608 to 89294611 3 - TSS region transcription start site region 42411
Tssr37781 4 89294756 to 89294769 13 + TSS region transcription start site region 37781
Tssr37782 4 89294862 to 89294903 41 + TSS region transcription start site region 37782
Tssr37783 4 89295297 to 89295307 10 + TSS region transcription start site region 37783
Tssr37784 4 89302880 to 89302884 4 + TSS region transcription start site region 37784
Cdkn2b 4 89306299 to 89311039 4740 - protein coding gene cyclin dependent kinase inhibitor 2B
Cpgi14440 4 89306922 to 89307402 480 CpG island CpG island 14440
Cpgi14441 4 89310419 to 89311265 846 CpG island CpG island 14441
Tssr42412 4 89310959 to 89311015 56 - TSS region transcription start site region 42412
Tssr42413 4 89311021 to 89311025 4 - TSS region transcription start site region 42413
D4Mit300 4 89359490 to 89359613 123 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 300
Gm12609 4 89381957 to 89399880 17923 + unclassified non-coding RNA gene predicted gene 12609
D4Mit245 4 89382838 to 89382954 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 245
Gm12610 4 89421848 to 89463487 41639 + lncRNA gene predicted gene 12610
D4Dcr11 4 89440179 to 89440283 104 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 11
Gm12608 4 89442220 to 89444592 2372 - pseudogene predicted gene 12608
Gm27580 4 89445219 to 89445367 148 + unclassified non-coding RNA gene predicted gene, 27580
Tssr1229 4 89447351 to 89447352 1 + TSS region transcription start site region 1229
Tssr37785 4 89477634 to 89477639 5 + TSS region transcription start site region 37785
D4Mit133 4 89521447 to 89521536 89 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 133
Cpgi14442 4 89524370 to 89524963 593 CpG island CpG island 14442
Cpgi14443 4 89687908 to 89689195 1287 CpG island CpG island 14443
Tssr37786 4 89688038 to 89688085 47 + TSS region transcription start site region 37786
Tssr37787 4 89688094 to 89688110 16 + TSS region transcription start site region 37787
Tssr37788 4 89688172 to 89688180 8 + TSS region transcription start site region 37788
Tssr37789 4 89688196 to 89688197 1 + TSS region transcription start site region 37789
Dmrta1 4 89688198 to 89694766 6568 + protein coding gene doublesex and mab-3 related transcription factor like family A1
Tssr37790 4 89818701 to 89818703 2 + TSS region transcription start site region 37790
Tssr42414 4 89859313 to 89859316 3 - TSS region transcription start site region 42414
Gm12629 4 90185527 to 90190009 4482 + lincRNA gene predicted gene 12629
Zfp352 4 90218820 to 90225687 6867 + protein coding gene zinc finger protein 352
Gm12633 4 90359625 to 90361314 1689 - pseudogene predicted gene 12633
Gm12634 4 90368731 to 90369722 991 + pseudogene predicted gene 12634
Gm12635 4 90452874 to 90453625 751 + pseudogene predicted gene 12635
Gm12636 4 90543747 to 90544370 623 - pseudogene predicted gene 12636
Gm12632 4 90856883 to 90857377 494 + pseudogene predicted gene 12632
Gm25244 4 90997862 to 90997993 131 - snoRNA gene predicted gene, 25244
Gm12643 4 91037884 to 91038199 315 + pseudogene predicted gene 12643
D4Mit165 4 91117256 to 91117397 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 165
D4Mit186 4 91145650 to 91145792 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 186
Bulb1 4 91145650 to 91145792 142 QTL bulb size 1
Gm12644 4 91156682 to 91157287 605 + pseudogene predicted gene 12644
A730080H06Rik 4 91211532 to 91246042 34510 - lncRNA gene RIKEN cDNA A730080H06 gene
Elavl2 4 91250766 to 91400059 149293 - protein coding gene ELAV like RNA binding protein 1
Tssr42415 4 91363878 to 91363882 4 - TSS region transcription start site region 42415
Gm12653 4 91365379 to 91365939 560 + pseudogene predicted gene 12653
Cpgi14444 4 91370907 to 91372606 1699 CpG island CpG island 14444
Tssr42416 4 91371946 to 91371972 26 - TSS region transcription start site region 42416
Tssr42417 4 91371984 to 91372000 16 - TSS region transcription start site region 42417
Tssr42418 4 91372028 to 91372047 19 - TSS region transcription start site region 42418
Cpgi14445 4 91372895 to 91373081 186 CpG island CpG island 14445
Mir6402 4 91373284 to 91373363 79 - miRNA gene microRNA 6402
Cpgi14446 4 91374350 to 91375188 838 CpG island CpG island 14446
Cpgi14447 4 91376305 to 91376694 389 CpG island CpG island 14447
Tssr42419 4 91376315 to 91376330 15 - TSS region transcription start site region 42419
Tssr42420 4 91376331 to 91376355 24 - TSS region transcription start site region 42420
Tssr42421 4 91376362 to 91376377 15 - TSS region transcription start site region 42421
Tssr42422 4 91376433 to 91376477 44 - TSS region transcription start site region 42422
Tssr42423 4 91376490 to 91376502 12 - TSS region transcription start site region 42423
Tssr42424 4 91399996 to 91400007 11 - TSS region transcription start site region 42424
Cpgi14448 4 91400484 to 91400877 393 CpG island CpG island 14448
D4Mit329 4 91454783 to 91454893 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 329
Epid1 4 100000000 to 90000000 -10000000 QTL epididymis and vas deferens weight 1
Svwq1 4 119000000 to 90000000 -29000000 QTL seminal vesicle weight QTL 1
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7