Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:82532229-83572241

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Cpgi14400 4 82536561 to 82537169 608 CpG island CpG island 14400
Cpgi14401 4 82537439 to 82537626 187 CpG island CpG island 14401
Tssr37685 4 82537643 to 82537649 6 + TSS region transcription start site region 37685
Gm11266 4 82540511 to 82547295 6784 + antisense lncRNA gene predicted gene 11266
Tssr42260 4 82561690 to 82561692 2 - TSS region transcription start site region 42260
Gm11267 4 82585048 to 82587319 2271 - sense intronic lncRNA gene predicted gene 11267
Tssr1214 4 82591220 to 82591223 3 + TSS region transcription start site region 1214
Gm42305 4 82605505 to 82606917 1412 + lncRNA gene predicted gene, 42305
n-THgtg10 4 82619623 to 82619694 71 - tRNA gene nuclear encoded tRNA histidine 10 (anticodon GTG)
D4Mit299 4 82638138 to 82638224 86 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 299
Gm11268 4 82642400 to 82642666 266 + pseudogene predicted gene 11268
Tssr42261 4 82687821 to 82687822 1 - TSS region transcription start site region 42261
Tssr37686 4 82692751 to 82692767 16 + TSS region transcription start site region 37686
Tssr37687 4 82692768 to 82692776 8 + TSS region transcription start site region 37687
Gm11269 4 82692805 to 82693711 906 + antisense lncRNA gene predicted gene 11269
Tssr42262 4 82705623 to 82705637 14 - TSS region transcription start site region 42262
Tssr42263 4 82705640 to 82705659 19 - TSS region transcription start site region 42263
Tssr42264 4 82705662 to 82705703 41 - TSS region transcription start site region 42264
Tssr42265 4 82705735 to 82705754 19 - TSS region transcription start site region 42265
Tssr42266 4 82705900 to 82705909 9 - TSS region transcription start site region 42266
Cpgi14402 4 82734791 to 82734982 191 CpG island CpG island 14402
Zdhhc21 4 82798738 to 82859944 61206 - protein coding gene zinc finger, DHHC domain containing 21
Cytrq1 4 82799849 to 82799849 0 QTL cytokine response QTL 1
Tssr42267 4 82800259 to 82800279 20 - TSS region transcription start site region 42267
Tssr42268 4 82850642 to 82850659 17 - TSS region transcription start site region 42268
Tssr42269 4 82850698 to 82850706 8 - TSS region transcription start site region 42269
Tssr42270 4 82850721 to 82850733 12 - TSS region transcription start site region 42270
Cpgi14403 4 82859124 to 82859986 862 CpG island CpG island 14403
Tssr42271 4 82859516 to 82859570 54 - TSS region transcription start site region 42271
Tssr42272 4 82859571 to 82859679 108 - TSS region transcription start site region 42272
Tssr42273 4 82859796 to 82859817 21 - TSS region transcription start site region 42273
Tssr42274 4 82859830 to 82859855 25 - TSS region transcription start site region 42274
Cer1 4 82881751 to 82885148 3397 - protein coding gene cerberus 1, DAN family BMP antagonist
Tssr1215 4 82882647 to 82882650 3 - TSS region transcription start site region 1215
Tssr42275 4 82882812 to 82882827 15 - TSS region transcription start site region 42275
Tssr42276 4 82885103 to 82885110 7 - TSS region transcription start site region 42276
Tssr42277 4 82885147 to 82885152 5 - TSS region transcription start site region 42277
D4Mit298 4 82888026 to 82888148 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 298
Frem1 4 82897920 to 83052339 154419 - protein coding gene Fras1 related extracellular matrix protein 1
Gm33260 4 82922313 to 82940309 17996 + lncRNA gene predicted gene, 33260
D4Mit79 4 82990787 to 82990923 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 79
Tssr42278 4 83003061 to 83003065 4 - TSS region transcription start site region 42278
Tssr42279 4 83021129 to 83021135 6 - TSS region transcription start site region 42279
Tssr37688 4 83023797 to 83023802 5 + TSS region transcription start site region 37688
4930441N18Rik 4 83023798 to 83024239 441 unclassified gene RIKEN cDNA 4930441N18 gene
Tssr42280 4 83052147 to 83052185 38 - TSS region transcription start site region 42280
Tssr42281 4 83052186 to 83052197 11 - TSS region transcription start site region 42281
Tssr42282 4 83052229 to 83052241 12 - TSS region transcription start site region 42282
Gm24884 4 83078511 to 83078629 118 + snoRNA gene predicted gene, 24884
Tssr37689 4 83121518 to 83121525 7 + TSS region transcription start site region 37689
Gm11248 4 83121541 to 83121741 200 + pseudogene predicted gene 11248
Gm46887 4 83178401 to 83186545 8144 - lncRNA gene predicted gene, 46887
D4Mit348 4 83180747 to 83180920 173 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 348
Gm11185 4 83193988 to 83194994 1006 + pseudogene predicted gene 11185
Tssr42283 4 83203776 to 83203777 1 - TSS region transcription start site region 42283
Ttc39b 4 83220300 to 83324255 103955 - protein coding gene tetratricopeptide repeat domain 39B
Tssr42284 4 83233165 to 83233177 12 - TSS region transcription start site region 42284
Tssr42285 4 83256774 to 83256780 6 - TSS region transcription start site region 42285
Tssr42286 4 83266038 to 83266081 43 - TSS region transcription start site region 42286
Cpgi14404 4 83273643 to 83273835 192 CpG island CpG island 14404
Tssr42287 4 83273746 to 83273797 51 - TSS region transcription start site region 42287
Gm42307 4 83283094 to 83287822 4728 + lncRNA gene predicted gene, 42307
Tssr42288 4 83285125 to 83285138 13 - TSS region transcription start site region 42288
Tssr42289 4 83285141 to 83285169 28 - TSS region transcription start site region 42289
Tssr42290 4 83285171 to 83285214 43 - TSS region transcription start site region 42290
Gm23412 4 83285804 to 83285910 106 - snRNA gene predicted gene, 23412
Tssr42291 4 83316278 to 83316282 4 - TSS region transcription start site region 42291
Cpgi14405 4 83323362 to 83324621 1259 CpG island CpG island 14405
Tssr42292 4 83324135 to 83324205 70 - TSS region transcription start site region 42292
Tssr42293 4 83324254 to 83324269 15 - TSS region transcription start site region 42293
Gm42306 4 83324418 to 83330554 6136 + lncRNA gene predicted gene, 42306
Tssr37690 4 83342247 to 83342264 17 + TSS region transcription start site region 37690
D4Mit152 4 83357535 to 83357676 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 152
Gm11413 4 83378317 to 83390668 12351 - antisense lncRNA gene predicted gene 11413
Gm11184 4 83383064 to 83392205 9141 + lincRNA gene predicted gene 11184
Tssr42294 4 83389983 to 83390020 37 - TSS region transcription start site region 42294
Cpgi14406 4 83417274 to 83418233 959 CpG island CpG island 14406
Tssr42295 4 83417553 to 83417577 24 - TSS region transcription start site region 42295
Tssr37691 4 83417715 to 83417758 43 + TSS region transcription start site region 37691
Snapc3 4 83417724 to 83467676 49952 + protein coding gene small nuclear RNA activating complex, polypeptide 3
Tssr37692 4 83435088 to 83435096 8 + TSS region transcription start site region 37692
Psip1 4 83455680 to 83486459 30779 - protein coding gene PC4 and SFRS1 interacting protein 1
Tssr42296 4 83462174 to 83462183 9 - TSS region transcription start site region 42296
Tssr1216 4 83465040 to 83465081 41 + TSS region transcription start site region 1216
Tssr1217 4 83465098 to 83465116 18 + TSS region transcription start site region 1217
Tssr42297 4 83467209 to 83467218 9 - TSS region transcription start site region 42297
Tssr42298 4 83468632 to 83468652 20 - TSS region transcription start site region 42298
A930007D18Rik 4 83471742 to 83473017 1275 unclassified gene RIKEN cDNA A930007D18 gene
Cpgi14407 4 83485652 to 83486942 1290 CpG island CpG island 14407
Tssr42299 4 83485786 to 83485824 38 - TSS region transcription start site region 42299
Tssr42300 4 83485845 to 83485890 45 - TSS region transcription start site region 42300
Tssr42301 4 83485914 to 83485934 20 - TSS region transcription start site region 42301
Tssr42302 4 83486241 to 83486276 35 - TSS region transcription start site region 42302
Tssr42303 4 83486391 to 83486402 11 - TSS region transcription start site region 42303
Tssr42304 4 83486415 to 83486439 24 - TSS region transcription start site region 42304
Tssr42305 4 83486457 to 83486478 21 - TSS region transcription start site region 42305
Gm11414 4 83500499 to 83500761 262 - pseudogene predicted gene 11414
Gm10154 4 83505185 to 83505538 353 - pseudogene predicted gene 10154
Gm42308 4 83508280 to 83511290 3010 - lncRNA gene predicted gene, 42308
D4Mit185 4 83508596 to 83508700 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 185
Cpgi14408 4 83524995 to 83526029 1034 CpG island CpG island 14408
Tssr42306 4 83525280 to 83525322 42 - TSS region transcription start site region 42306
Tssr37693 4 83525540 to 83525616 76 + TSS region transcription start site region 37693
Ccdc171 4 83525545 to 83864670 339125 + protein coding gene coiled-coil domain containing 171
Tssr37694 4 83525617 to 83525629 12 + TSS region transcription start site region 37694
Gm25899 4 83527628 to 83527768 140 - snRNA gene predicted gene, 25899
Tssr1218 4 83527642 to 83527645 3 + TSS region transcription start site region 1218
Tssr42307 4 83527765 to 83527767 2 - TSS region transcription start site region 42307