Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:78459511-81549519

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
Alcw2 4 75941237 to 81442815 5501578 QTL alcohol withdrawal 2
A430085M09Rik 4 78594047 to 78597484 3437 + lncRNA gene RIKEN cDNA A430085M09 gene
Gm11261 4 78659858 to 78661588 1730 - lincRNA gene predicted gene 11261
Gm22262 4 78670147 to 78670232 85 + unclassified non-coding RNA gene predicted gene, 22262
Gm11262 4 78697652 to 78698928 1276 + pseudogene predicted gene 11262
Tssr37651 4 78773690 to 78773724 34 + TSS region transcription start site region 37651
Tssr37652 4 78773814 to 78773846 32 + TSS region transcription start site region 37652
Tssr37653 4 78774041 to 78774054 13 + TSS region transcription start site region 37653
Gm25836 4 79244587 to 79244709 122 - snoRNA gene predicted gene, 25836
Tssr37654 4 79327663 to 79327665 2 + TSS region transcription start site region 37654
Gm11263 4 79327708 to 79328453 745 + pseudogene predicted gene 11263
D4Mit80 4 79603605 to 79603773 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 80
Tssr1210 4 79737196 to 79737200 4 - TSS region transcription start site region 1210
Tssr37655 4 79768769 to 79768770 1 + TSS region transcription start site region 37655
Gm11409 4 79874351 to 79874753 402 + pseudogene predicted gene 11409
D4Mit114 4 79973034 to 79973183 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 114
Gm11407 4 80002331 to 80003388 1057 + pseudogene predicted gene 11407
Cpgi14393 4 80002499 to 80002988 489 CpG island CpG island 14393
Tssr37656 4 80002655 to 80002669 14 + TSS region transcription start site region 37656
Tssr37657 4 80002702 to 80002752 50 + TSS region transcription start site region 37657
Tssr37658 4 80002822 to 80002843 21 + TSS region transcription start site region 37658
Tssr37659 4 80003164 to 80003172 8 + TSS region transcription start site region 37659
Gm11408 4 80003396 to 80003914 518 - pseudogene predicted gene 11408
Tssr37660 4 80003426 to 80003460 34 + TSS region transcription start site region 37660
Tssr42213 4 80003464 to 80003497 33 - TSS region transcription start site region 42213
Tssr37661 4 80003469 to 80003499 30 + TSS region transcription start site region 37661
Cpgi14394 4 80003912 to 80005057 1145 CpG island CpG island 14394
Gm11410 4 80003989 to 80005131 1142 + pseudogene predicted gene 11410
Tssr37662 4 80003990 to 80003992 2 + TSS region transcription start site region 37662
Tssr37663 4 80004453 to 80004482 29 + TSS region transcription start site region 37663
Tssr37664 4 80004511 to 80004519 8 + TSS region transcription start site region 37664
Gm11406 4 80440398 to 80440881 483 + pseudogene predicted gene 11406
Gm32658 4 80509338 to 80630259 120921 - lncRNA gene predicted gene, 32658
D4Mit347 4 80671333 to 80671443 110 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 347
D4Mit81 4 80701289 to 80701448 159 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 81
Pfat1 4 80701289 to 80701448 159 QTL predicted fat percentage 1
Gm46885 4 80703650 to 80726133 22483 + lncRNA gene predicted gene, 46885
Gm42304 4 80740299 to 80744128 3829 + lncRNA gene predicted gene, 42304
Tssr37665 4 80834204 to 80834221 17 + TSS region transcription start site region 37665
Tyrp1 4 80834208 to 80851736 17528 + protein coding gene tyrosinase-related protein 1
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Tssr37666 4 80834286 to 80834295 9 + TSS region transcription start site region 37666
Tssr37667 4 80834298 to 80834313 15 + TSS region transcription start site region 37667
Tssr37668 4 80834330 to 80834355 25 + TSS region transcription start site region 37668
Tssr37669 4 80834363 to 80834376 13 + TSS region transcription start site region 37669
D4Mit174 4 80842723 to 80842854 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 174
Tssr37670 4 80910670 to 80910685 15 + TSS region transcription start site region 37670
Lurap1l 4 80910686 to 80954301 43615 + protein coding gene leucine rich adaptor protein 1-like
Tssr37671 4 80910844 to 80910859 15 + TSS region transcription start site region 37671
Cpgi14395 4 80910948 to 80912030 1082 CpG island CpG island 14395
2010003D24Rik 4 80914348 to 80914809 461 unclassified gene RIKEN cDNA 2010003D24 gene
9430051O21Rik 4 80917389 to 80918761 1372 unclassified gene RIKEN cDNA 9430051O21 gene
Tssr37672 4 80932141 to 80932145 4 + TSS region transcription start site region 37672
Gm27452 4 80967444 to 80967539 95 + miRNA gene predicted gene, 27452
Cpgi14396 4 81178730 to 81179014 284 CpG island CpG island 14396
Mpdz 4 81278500 to 81442815 164315 - protein coding gene multiple PDZ domain protein
Tsti1 4 81278500 to 81442815 164315 QTL tail suspension test immobility 1
Berr8 4 81304223 to 81304223 0 QTL berghei resistance locus 8
Gm25803 4 81338274 to 81338404 130 - snoRNA gene predicted gene, 25803
Tssr42214 4 81348722 to 81348736 14 - TSS region transcription start site region 42214
Tssr42215 4 81361463 to 81361500 37 - TSS region transcription start site region 42215
D4Mit173 4 81388780 to 81388878 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 173
D4Nds7 4 81388789 to 81388879 90 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 7
Cpgi14397 4 81442070 to 81443355 1285 CpG island CpG island 14397
Tssr37673 4 81442426 to 81442444 18 + TSS region transcription start site region 37673
Tssr42216 4 81442743 to 81442754 11 - TSS region transcription start site region 42216
Tssr42217 4 81442756 to 81442836 80 - TSS region transcription start site region 42217
Tssr1211 4 81452333 to 81452341 8 - TSS region transcription start site region 1211
Gm11765 4 81455943 to 81461732 5789 - pseudogene predicted gene 11765