Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:58824003-60524013

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vc 4 57190841 to 59041899 1851058 heritable phenotypic marker vacillans
Ecpas 4 58798911 to 58912749 113838 - protein coding gene Ecm29 proteasome adaptor and scaffold
Tssr41900 4 58839914 to 58839948 34 - TSS region transcription start site region 41900
Tssr41901 4 58839984 to 58839997 13 - TSS region transcription start site region 41901
Tssr41902 4 58840743 to 58840774 31 - TSS region transcription start site region 41902
Tssr41903 4 58844955 to 58844972 17 - TSS region transcription start site region 41903
Tssr41904 4 58867168 to 58867181 13 - TSS region transcription start site region 41904
Tssr41905 4 58878854 to 58878859 5 - TSS region transcription start site region 41905
Tssr41906 4 58879081 to 58879093 12 - TSS region transcription start site region 41906
Tssr41907 4 58885472 to 58885502 30 - TSS region transcription start site region 41907
Tssr41908 4 58893669 to 58893673 4 - TSS region transcription start site region 41908
Tssr41909 4 58907556 to 58907561 5 - TSS region transcription start site region 41909
Tssr41910 4 58910143 to 58910154 11 - TSS region transcription start site region 41910
Cpgi14340 4 58911140 to 58913029 1889 CpG island CpG island 14340
Tssr41911 4 58911913 to 58911945 32 - TSS region transcription start site region 41911
Tssr41912 4 58912037 to 58912050 13 - TSS region transcription start site region 41912
Tssr41913 4 58912081 to 58912120 39 - TSS region transcription start site region 41913
Tssr41914 4 58912203 to 58912238 35 - TSS region transcription start site region 41914
Tssr41915 4 58912249 to 58912276 27 - TSS region transcription start site region 41915
Tssr41916 4 58912649 to 58912662 13 - TSS region transcription start site region 41916
Tssr41917 4 58912678 to 58912776 98 - TSS region transcription start site region 41917
D4Mit151 4 58913499 to 58913648 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 151
Tssr41918 4 58915472 to 58915486 14 - TSS region transcription start site region 41918
Gm26400 4 58938025 to 58938109 84 + rRNA gene predicted gene, 26400
Cpgi14341 4 58943438 to 58944087 649 CpG island CpG island 14341
Tssr37403 4 58943575 to 58943638 63 + TSS region transcription start site region 37403
Zkscan16 4 58943628 to 58958355 14727 + protein coding gene zinc finger with KRAB and SCAN domains 16
Cpgi14342 4 58956819 to 58957211 392 CpG island CpG island 14342
Ptgr1 4 58965590 to 58987131 21541 - protein coding gene prostaglandin reductase 1
Tssr41919 4 58981882 to 58981886 4 - TSS region transcription start site region 41919
Tssr37404 4 58985591 to 58985613 22 + TSS region transcription start site region 37404
Tssr41920 4 58987068 to 58987086 18 - TSS region transcription start site region 41920
Tssr41921 4 58987095 to 58987116 21 - TSS region transcription start site region 41921
Tssr41922 4 58987117 to 58987131 14 - TSS region transcription start site region 41922
Tssr37405 4 58994309 to 58994321 12 + TSS region transcription start site region 37405
Dnajc25 4 58994800 to 59023398 28598 + protein coding gene DnaJ heat shock protein family (Hsp40) member C25
4930432F03Rik 4 59002337 to 59003074 737 unclassified gene RIKEN cDNA 4930432F03 gene
Cpgi14343 4 59002747 to 59003788 1041 CpG island CpG island 14343
Tssr37406 4 59003121 to 59003215 94 + TSS region transcription start site region 37406
Gm20503 4 59003210 to 59041888 38678 + protein coding gene predicted gene 20503
Tssr37407 4 59017666 to 59017713 47 + TSS region transcription start site region 37407
Tssr37408 4 59033205 to 59033217 12 + TSS region transcription start site region 37408
Cpgi14344 4 59034918 to 59036056 1138 CpG island CpG island 14344
Gng10 4 59035156 to 59041899 6743 + protein coding gene guanine nucleotide binding protein (G protein), gamma 10
Tssr37409 4 59035175 to 59035247 72 + TSS region transcription start site region 37409
Tssr1186 4 59035250 to 59035261 11 + TSS region transcription start site region 1186
Tssr37410 4 59035464 to 59035478 14 + TSS region transcription start site region 37410
Tssr37411 4 59035493 to 59035501 8 + TSS region transcription start site region 37411
Shoc1 4 59041984 to 59113971 71987 - protein coding gene shortage in chiasmata 1
Gm12593 4 59090187 to 59090929 742 + pseudogene predicted gene 12593
Tssr41923 4 59117833 to 59117843 10 - TSS region transcription start site region 41923
Gm35527 4 59117970 to 59135814 17844 + lncRNA gene predicted gene, 35527
Tssr1187 4 59134598 to 59134600 2 - TSS region transcription start site region 1187
Gm12594 4 59135068 to 59137454 2386 - sense intronic lncRNA gene predicted gene 12594
Rpsa-ps11 4 59162268 to 59163156 888 - pseudogene ribosomal protein SA, pseudogene 11
Cpgi14345 4 59188825 to 59190187 1362 CpG island CpG island 14345
Tssr37412 4 59189202 to 59189213 11 + TSS region transcription start site region 37412
Tssr37413 4 59189240 to 59189254 14 + TSS region transcription start site region 37413
Ugcg 4 59189257 to 59222833 33576 + protein coding gene UDP-glucose ceramide glucosyltransferase
Tssr37414 4 59189440 to 59189555 115 + TSS region transcription start site region 37414
Tssr37415 4 59189561 to 59189586 25 + TSS region transcription start site region 37415
Tssr37416 4 59189639 to 59189646 7 + TSS region transcription start site region 37416
Tssr37417 4 59189666 to 59189677 11 + TSS region transcription start site region 37417
Tssr37418 4 59197560 to 59197564 4 + TSS region transcription start site region 37418
Tssr37419 4 59214156 to 59214176 20 + TSS region transcription start site region 37419
Tssr37420 4 59221619 to 59221632 13 + TSS region transcription start site region 37420
Tssr41924 4 59254274 to 59254286 12 - TSS region transcription start site region 41924
Tssr37421 4 59260036 to 59260053 17 + TSS region transcription start site region 37421
Gm12596 4 59260051 to 59263269 3218 + lincRNA gene predicted gene 12596
Tssr37422 4 59262990 to 59263002 12 + TSS region transcription start site region 37422
Gm35578 4 59269203 to 59281709 12506 - lncRNA gene predicted gene, 35578
Tssr37423 4 59287378 to 59287393 15 + TSS region transcription start site region 37423
Tssr37424 4 59287398 to 59287414 16 + TSS region transcription start site region 37424
Tssr37425 4 59287428 to 59287451 23 + TSS region transcription start site region 37425
Susd1 4 59314683 to 59438633 123950 - protein coding gene sushi domain containing 1
Tssr41925 4 59315795 to 59315813 18 - TSS region transcription start site region 41925
Tssr41926 4 59331731 to 59331743 12 - TSS region transcription start site region 41926
Tssr41927 4 59331771 to 59331786 15 - TSS region transcription start site region 41927
Tssr37426 4 59331995 to 59332009 14 + TSS region transcription start site region 37426
Tssr41928 4 59336135 to 59336163 28 - TSS region transcription start site region 41928
Tssr37427 4 59337988 to 59338007 19 + TSS region transcription start site region 37427
Tssr41929 4 59349917 to 59349934 17 - TSS region transcription start site region 41929
Tssr41930 4 59349941 to 59349990 49 - TSS region transcription start site region 41930
Tssr41931 4 59350009 to 59350022 13 - TSS region transcription start site region 41931
Tssr41932 4 59351722 to 59351754 32 - TSS region transcription start site region 41932
Tssr37428 4 59352171 to 59352214 43 + TSS region transcription start site region 37428
Gm12527 4 59368303 to 59368866 563 - pseudogene predicted gene 12527
Tssr1188 4 59402045 to 59402050 5 + TSS region transcription start site region 1188
Bpq3 4 59402240 to 59402381 141 QTL blood pressure QTL 3
D4Mit164 4 59402240 to 59402381 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 164
Tssr37429 4 59434329 to 59434370 41 + TSS region transcription start site region 37429
Cpgi14346 4 59437889 to 59438793 904 CpG island CpG island 14346
Tssr37430 4 59438153 to 59438175 22 + TSS region transcription start site region 37430
Tssr41933 4 59438290 to 59438305 15 - TSS region transcription start site region 41933
Tssr41934 4 59438345 to 59438426 81 - TSS region transcription start site region 41934
Tssr41935 4 59438650 to 59438679 29 - TSS region transcription start site region 41935
Tssr37431 4 59440138 to 59440155 17 + TSS region transcription start site region 37431
Ptbp3 4 59471868 to 59549364 77496 - protein coding gene polypyrimidine tract binding protein 3
Tssr41936 4 59472823 to 59472850 27 - TSS region transcription start site region 41936
Tssr41937 4 59472895 to 59472918 23 - TSS region transcription start site region 41937
Tssr41938 4 59474792 to 59474803 11 - TSS region transcription start site region 41938
Tssr41939 4 59474817 to 59474843 26 - TSS region transcription start site region 41939
Tssr41940 4 59474858 to 59474875 17 - TSS region transcription start site region 41940
Tssr41941 4 59474880 to 59474898 18 - TSS region transcription start site region 41941
Tssr41942 4 59475901 to 59475921 20 - TSS region transcription start site region 41942
Tssr41943 4 59476275 to 59476289 14 - TSS region transcription start site region 41943
Tssr41944 4 59505897 to 59505907 10 - TSS region transcription start site region 41944
D4Mit243 4 59529357 to 59529501 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 243
Gm12529 4 59532747 to 59533014 267 + pseudogene predicted gene 12529
Tssr41945 4 59538075 to 59538087 12 - TSS region transcription start site region 41945
Cpgi14347 4 59548532 to 59549915 1383 CpG island CpG island 14347
1700018M17Rik 4 59549154 to 59549625 471 + pseudogene RIKEN cDNA 1700018M17 gene
Tssr41946 4 59549275 to 59549303 28 - TSS region transcription start site region 41946
Tssr41947 4 59549314 to 59549325 11 - TSS region transcription start site region 41947
D4Mit44 4 59552512 to 59552657 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 44
Tssr37432 4 59579020 to 59579025 5 + TSS region transcription start site region 37432
Cpgi14348 4 59581140 to 59582120 980 CpG island CpG island 14348
Tssr41948 4 59581427 to 59581438 11 - TSS region transcription start site region 41948
Tssr37433 4 59581522 to 59581532 10 + TSS region transcription start site region 37433
Tssr37434 4 59581543 to 59581554 11 + TSS region transcription start site region 37434
Tssr37435 4 59581557 to 59581568 11 + TSS region transcription start site region 37435
Hsdl2 4 59581563 to 59618689 37126 + protein coding gene hydroxysteroid dehydrogenase like 2
Tssr37436 4 59581589 to 59581600 11 + TSS region transcription start site region 37436
Tssr37437 4 59581617 to 59581629 12 + TSS region transcription start site region 37437
Tssr37438 4 59581675 to 59581682 7 + TSS region transcription start site region 37438
Tssr37439 4 59581697 to 59581714 17 + TSS region transcription start site region 37439
Tssr37440 4 59581721 to 59581732 11 + TSS region transcription start site region 37440
Tssr37441 4 59618285 to 59618289 4 + TSS region transcription start site region 37441
Cpgi14349 4 59625558 to 59627003 1445 CpG island CpG island 14349
Tssr37442 4 59626189 to 59626253 64 + TSS region transcription start site region 37442
E130308A19Rik 4 59626200 to 59757649 131449 + protein coding gene RIKEN cDNA E130308A19 gene
Tssr37443 4 59633426 to 59633430 4 + TSS region transcription start site region 37443
Tssr37444 4 59674003 to 59674013 10 + TSS region transcription start site region 37444
Tssr37445 4 59728046 to 59728051 5 + TSS region transcription start site region 37445
2700054B07Rik 4 59769123 to 59769390 267 unclassified gene RIKEN cDNA 2700054B07 gene
Inip 4 59769642 to 59783855 14213 - protein coding gene INTS3 and NABP interacting protein
Tssr41949 4 59781371 to 59781375 4 - TSS region transcription start site region 41949
Cpgi14350 4 59783281 to 59784108 827 CpG island CpG island 14350
Tssr41950 4 59783800 to 59783876 76 - TSS region transcription start site region 41950
Tssr37446 4 59805003 to 59805012 9 + TSS region transcription start site region 37446
Cpgi14351 4 59805295 to 59806581 1286 CpG island CpG island 14351
Tssr37447 4 59805829 to 59805914 85 + TSS region transcription start site region 37447
Snx30 4 59805840 to 59904737 98897 + protein coding gene sorting nexin family member 30
Tssr37448 4 59806817 to 59806839 22 + TSS region transcription start site region 37448
D4Mit217 4 59833227 to 59833362 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 217
Gm12543 4 59833674 to 59834216 542 + pseudogene predicted gene 12543
Tssr37449 4 59868484 to 59868497 13 + TSS region transcription start site region 37449
Tssr37450 4 59873767 to 59873774 7 + TSS region transcription start site region 37450
Tssr37451 4 59880024 to 59880029 5 + TSS region transcription start site region 37451
Tssr37452 4 59884637 to 59884642 5 + TSS region transcription start site region 37452
Gm12542 4 59889986 to 59894924 4938 - antisense lncRNA gene predicted gene 12542
Tssr1189 4 59890786 to 59890801 15 + TSS region transcription start site region 1189
Tssr37453 4 59905123 to 59905135 12 + TSS region transcription start site region 37453
Slc46a2 4 59905899 to 59915056 9157 - protein coding gene solute carrier family 46, member 2
Tssr41951 4 59914256 to 59914259 3 - TSS region transcription start site region 41951
Cpgi14352 4 59914262 to 59914825 563 CpG island CpG island 14352
Tssr41952 4 59914850 to 59914860 10 - TSS region transcription start site region 41952
Tssr41953 4 59914950 to 59914961 11 - TSS region transcription start site region 41953
Tssr41954 4 59915035 to 59915063 28 - TSS region transcription start site region 41954
Tssr37454 4 59933871 to 59933881 10 + TSS region transcription start site region 37454
Tssr37455 4 59944476 to 59944497 21 + TSS region transcription start site region 37455
Mup4 4 59956806 to 59960669 3863 - protein coding gene major urinary protein 4
Tssr41955 4 59960659 to 59960668 9 - TSS region transcription start site region 41955
Tssr37456 4 59964132 to 59964140 8 + TSS region transcription start site region 37456
Tssr37457 4 59964175 to 59964186 11 + TSS region transcription start site region 37457
Tssr37458 4 59964189 to 59964198 9 + TSS region transcription start site region 37458
Tssr37459 4 59964209 to 59964250 41 + TSS region transcription start site region 37459
Tssr37460 4 59964272 to 59964283 11 + TSS region transcription start site region 37460
Tssr37461 4 60003478 to 60003486 8 + TSS region transcription start site region 37461
Mup6 4 60003549 to 60006214 2665 + protein coding gene major urinary protein 6
Tssr37462 4 60004768 to 60004793 25 + TSS region transcription start site region 37462
Tssr37463 4 60004834 to 60004865 31 + TSS region transcription start site region 37463
Tssr37464 4 60005492 to 60005502 10 + TSS region transcription start site region 37464
Tssr37465 4 60005914 to 60005922 8 + TSS region transcription start site region 37465
Tssr37466 4 60006179 to 60006192 13 + TSS region transcription start site region 37466
Mup7 4 60066469 to 60070475 4006 - protein coding gene major urinary protein 7
Tssr164684 4 60070461 to 60070481 20 - TSS region transcription start site region 164684
Mup-ps1 4 60085840 to 60088577 2737 + pseudogene major urinary protein, pseudogene 1
Mup2 4 60135913 to 60139872 3959 - protein coding gene major urinary protein 2
Mup-ps2 4 60155274 to 60157966 2692 + pseudogene major urinary protein, pseudogene 2
Mup8 4 60218621 to 60222599 3978 - protein coding gene major urinary protein 8
Mup-ps3 4 60239378 to 60244889 5511 + pseudogene major urinary protein, pseudogene 3
Mup-ps29 4 60384494 to 60384695 201 + pseudogene major urinary protein, pseudogene 29
Mup-ps28 4 60389861 to 60390149 288 + pseudogene major urinary protein, pseudogene 28
Mup9 4 60418046 to 60421952 3906 - protein coding gene major urinary protein 9
Tssr41956 4 60421948 to 60421955 7 - TSS region transcription start site region 41956
Mup-ps4 4 60437361 to 60440063 2702 + pseudogene major urinary protein, pseudogene 4
Mup-ps26 4 60479408 to 60479609 201 + pseudogene major urinary protein, pseudogene 26
Mup1 4 60498012 to 60501960 3948 - protein coding gene major urinary protein 1
Lhyp 4 60498012 to 66846581 6348569 QTL lung hyperpermeability
Gm13773 4 60503038 to 60521228 18190 + lncRNA gene predicted gene 13773
Mup-ps6 4 60517461 to 60520175 2714 + pseudogene major urinary protein, pseudogene 6