Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:58252249-59572276

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vc 4 57190841 to 59041899 1851058 heritable phenotypic marker vacillans
Gm30907 4 58268019 to 58268196 177 - pseudogene predicted gene, 30907
Tssr37398 4 58285930 to 58285975 45 + TSS region transcription start site region 37398
Musk 4 58285960 to 58374303 88343 + protein coding gene muscle, skeletal, receptor tyrosine kinase
Tssr37399 4 58286064 to 58286068 4 + TSS region transcription start site region 37399
Tssr1185 4 58289129 to 58289138 9 + TSS region transcription start site region 1185
Tssr37400 4 58327268 to 58327279 11 + TSS region transcription start site region 37400
Cpgi14337 4 58366743 to 58366959 216 CpG island CpG island 14337
Cpgi14338 4 58373165 to 58373434 269 CpG island CpG island 14338
Lpar1 4 58435255 to 58553898 118643 - protein coding gene lysophosphatidic acid receptor 1
Tssr41881 4 58436852 to 58436864 12 - TSS region transcription start site region 41881
D4Mit1005 4 58439478 to 58439598 120 DNA segment DNA Segment, Chr 4 Massachusetts Institute of Technology 1005
Mir3095 4 58441012 to 58441098 86 - miRNA gene microRNA 3095
Tssr41882 4 58444116 to 58444120 4 - TSS region transcription start site region 41882
Tssr41883 4 58458932 to 58458939 7 - TSS region transcription start site region 41883
Tssr41884 4 58482098 to 58482110 12 - TSS region transcription start site region 41884
Gm12577 4 58483252 to 58483825 573 - pseudogene predicted gene 12577
Tssr41885 4 58483621 to 58483642 21 - TSS region transcription start site region 41885
Tssr41886 4 58499377 to 58499388 11 - TSS region transcription start site region 41886
Tssr41887 4 58499390 to 58499395 5 - TSS region transcription start site region 41887
Tssr41888 4 58499398 to 58499409 11 - TSS region transcription start site region 41888
Tssr41889 4 58499412 to 58499427 15 - TSS region transcription start site region 41889
Tssr41890 4 58529948 to 58529951 3 - TSS region transcription start site region 41890
Tssr41891 4 58545701 to 58545722 21 - TSS region transcription start site region 41891
Cpgi14339 4 58552841 to 58553951 1110 CpG island CpG island 14339
Tssr41892 4 58553171 to 58553180 9 - TSS region transcription start site region 41892
Tssr41893 4 58553187 to 58553261 74 - TSS region transcription start site region 41893
Tssr41894 4 58553263 to 58553275 12 - TSS region transcription start site region 41894
Tssr41895 4 58553288 to 58553298 10 - TSS region transcription start site region 41895
Tssr41896 4 58553311 to 58553322 11 - TSS region transcription start site region 41896
Tssr41897 4 58553747 to 58553770 23 - TSS region transcription start site region 41897
Gm12578 4 58589764 to 58590180 416 + pseudogene predicted gene 12578
Gm12579 4 58611058 to 58611840 782 + pseudogene predicted gene 12579
Tssr37401 4 58644603 to 58644608 5 + TSS region transcription start site region 37401
Tssr37402 4 58645185 to 58645226 41 + TSS region transcription start site region 37402
Gm12580 4 58648392 to 58658592 10200 - lincRNA gene predicted gene 12580
Olfr267 4 58784779 to 58785720 941 - protein coding gene olfactory receptor 267
Tssr41898 4 58797597 to 58797601 4 - TSS region transcription start site region 41898
Ecpas 4 58798911 to 58912749 113838 - protein coding gene Ecm29 proteasome adaptor and scaffold
Tssr41899 4 58803749 to 58803764 15 - TSS region transcription start site region 41899
Tssr41900 4 58839914 to 58839948 34 - TSS region transcription start site region 41900
Tssr41901 4 58839984 to 58839997 13 - TSS region transcription start site region 41901
Tssr41902 4 58840743 to 58840774 31 - TSS region transcription start site region 41902
Tssr41903 4 58844955 to 58844972 17 - TSS region transcription start site region 41903
Tssr41904 4 58867168 to 58867181 13 - TSS region transcription start site region 41904
Tssr41905 4 58878854 to 58878859 5 - TSS region transcription start site region 41905
Tssr41906 4 58879081 to 58879093 12 - TSS region transcription start site region 41906
Tssr41907 4 58885472 to 58885502 30 - TSS region transcription start site region 41907
Tssr41908 4 58893669 to 58893673 4 - TSS region transcription start site region 41908
Tssr41909 4 58907556 to 58907561 5 - TSS region transcription start site region 41909
Tssr41910 4 58910143 to 58910154 11 - TSS region transcription start site region 41910
Cpgi14340 4 58911140 to 58913029 1889 CpG island CpG island 14340
Tssr41911 4 58911913 to 58911945 32 - TSS region transcription start site region 41911
Tssr41912 4 58912037 to 58912050 13 - TSS region transcription start site region 41912
Tssr41913 4 58912081 to 58912120 39 - TSS region transcription start site region 41913
Tssr41914 4 58912203 to 58912238 35 - TSS region transcription start site region 41914
Tssr41915 4 58912249 to 58912276 27 - TSS region transcription start site region 41915
Tssr41916 4 58912649 to 58912662 13 - TSS region transcription start site region 41916
Tssr41917 4 58912678 to 58912776 98 - TSS region transcription start site region 41917
D4Mit151 4 58913499 to 58913648 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 151
Tssr41918 4 58915472 to 58915486 14 - TSS region transcription start site region 41918
Gm26400 4 58938025 to 58938109 84 + rRNA gene predicted gene, 26400
Cpgi14341 4 58943438 to 58944087 649 CpG island CpG island 14341
Tssr37403 4 58943575 to 58943638 63 + TSS region transcription start site region 37403
Zkscan16 4 58943628 to 58958355 14727 + protein coding gene zinc finger with KRAB and SCAN domains 16
Cpgi14342 4 58956819 to 58957211 392 CpG island CpG island 14342
Ptgr1 4 58965590 to 58987131 21541 - protein coding gene prostaglandin reductase 1
Tssr41919 4 58981882 to 58981886 4 - TSS region transcription start site region 41919
Tssr37404 4 58985591 to 58985613 22 + TSS region transcription start site region 37404
Tssr41920 4 58987068 to 58987086 18 - TSS region transcription start site region 41920
Tssr41921 4 58987095 to 58987116 21 - TSS region transcription start site region 41921
Tssr41922 4 58987117 to 58987131 14 - TSS region transcription start site region 41922
Tssr37405 4 58994309 to 58994321 12 + TSS region transcription start site region 37405
Dnajc25 4 58994800 to 59023398 28598 + protein coding gene DnaJ heat shock protein family (Hsp40) member C25
4930432F03Rik 4 59002337 to 59003074 737 unclassified gene RIKEN cDNA 4930432F03 gene
Cpgi14343 4 59002747 to 59003788 1041 CpG island CpG island 14343
Tssr37406 4 59003121 to 59003215 94 + TSS region transcription start site region 37406
Gm20503 4 59003210 to 59041888 38678 + protein coding gene predicted gene 20503
Tssr37407 4 59017666 to 59017713 47 + TSS region transcription start site region 37407
Tssr37408 4 59033205 to 59033217 12 + TSS region transcription start site region 37408
Cpgi14344 4 59034918 to 59036056 1138 CpG island CpG island 14344
Gng10 4 59035156 to 59041899 6743 + protein coding gene guanine nucleotide binding protein (G protein), gamma 10
Tssr37409 4 59035175 to 59035247 72 + TSS region transcription start site region 37409
Tssr1186 4 59035250 to 59035261 11 + TSS region transcription start site region 1186
Tssr37410 4 59035464 to 59035478 14 + TSS region transcription start site region 37410
Tssr37411 4 59035493 to 59035501 8 + TSS region transcription start site region 37411
Shoc1 4 59041984 to 59113971 71987 - protein coding gene shortage in chiasmata 1
Gm12593 4 59090187 to 59090929 742 + pseudogene predicted gene 12593
Tssr41923 4 59117833 to 59117843 10 - TSS region transcription start site region 41923
Gm35527 4 59117970 to 59135814 17844 + lncRNA gene predicted gene, 35527
Tssr1187 4 59134598 to 59134600 2 - TSS region transcription start site region 1187
Gm12594 4 59135068 to 59137454 2386 - sense intronic lncRNA gene predicted gene 12594
Rpsa-ps11 4 59162268 to 59163156 888 - pseudogene ribosomal protein SA, pseudogene 11
Cpgi14345 4 59188825 to 59190187 1362 CpG island CpG island 14345
Tssr37412 4 59189202 to 59189213 11 + TSS region transcription start site region 37412
Tssr37413 4 59189240 to 59189254 14 + TSS region transcription start site region 37413
Ugcg 4 59189257 to 59222833 33576 + protein coding gene UDP-glucose ceramide glucosyltransferase
Tssr37414 4 59189440 to 59189555 115 + TSS region transcription start site region 37414
Tssr37415 4 59189561 to 59189586 25 + TSS region transcription start site region 37415
Tssr37416 4 59189639 to 59189646 7 + TSS region transcription start site region 37416
Tssr37417 4 59189666 to 59189677 11 + TSS region transcription start site region 37417
Tssr37418 4 59197560 to 59197564 4 + TSS region transcription start site region 37418
Tssr37419 4 59214156 to 59214176 20 + TSS region transcription start site region 37419
Tssr37420 4 59221619 to 59221632 13 + TSS region transcription start site region 37420
Tssr41924 4 59254274 to 59254286 12 - TSS region transcription start site region 41924
Tssr37421 4 59260036 to 59260053 17 + TSS region transcription start site region 37421
Gm12596 4 59260051 to 59263269 3218 + lincRNA gene predicted gene 12596
Tssr37422 4 59262990 to 59263002 12 + TSS region transcription start site region 37422
Gm35578 4 59269203 to 59281709 12506 - lncRNA gene predicted gene, 35578
Tssr37423 4 59287378 to 59287393 15 + TSS region transcription start site region 37423
Tssr37424 4 59287398 to 59287414 16 + TSS region transcription start site region 37424
Tssr37425 4 59287428 to 59287451 23 + TSS region transcription start site region 37425
Susd1 4 59314683 to 59438633 123950 - protein coding gene sushi domain containing 1
Tssr41925 4 59315795 to 59315813 18 - TSS region transcription start site region 41925
Tssr41926 4 59331731 to 59331743 12 - TSS region transcription start site region 41926
Tssr41927 4 59331771 to 59331786 15 - TSS region transcription start site region 41927
Tssr37426 4 59331995 to 59332009 14 + TSS region transcription start site region 37426
Tssr41928 4 59336135 to 59336163 28 - TSS region transcription start site region 41928
Tssr37427 4 59337988 to 59338007 19 + TSS region transcription start site region 37427
Tssr41929 4 59349917 to 59349934 17 - TSS region transcription start site region 41929
Tssr41930 4 59349941 to 59349990 49 - TSS region transcription start site region 41930
Tssr41931 4 59350009 to 59350022 13 - TSS region transcription start site region 41931
Tssr41932 4 59351722 to 59351754 32 - TSS region transcription start site region 41932
Tssr37428 4 59352171 to 59352214 43 + TSS region transcription start site region 37428
Gm12527 4 59368303 to 59368866 563 - pseudogene predicted gene 12527
Tssr1188 4 59402045 to 59402050 5 + TSS region transcription start site region 1188
D4Mit164 4 59402240 to 59402381 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 164
Bpq3 4 59402240 to 59402381 141 QTL blood pressure QTL 3
Tssr37429 4 59434329 to 59434370 41 + TSS region transcription start site region 37429
Cpgi14346 4 59437889 to 59438793 904 CpG island CpG island 14346
Tssr37430 4 59438153 to 59438175 22 + TSS region transcription start site region 37430
Tssr41933 4 59438290 to 59438305 15 - TSS region transcription start site region 41933
Tssr41934 4 59438345 to 59438426 81 - TSS region transcription start site region 41934
Tssr41935 4 59438650 to 59438679 29 - TSS region transcription start site region 41935
Tssr37431 4 59440138 to 59440155 17 + TSS region transcription start site region 37431
Ptbp3 4 59471868 to 59549364 77496 - protein coding gene polypyrimidine tract binding protein 3
Tssr41936 4 59472823 to 59472850 27 - TSS region transcription start site region 41936
Tssr41937 4 59472895 to 59472918 23 - TSS region transcription start site region 41937
Tssr41938 4 59474792 to 59474803 11 - TSS region transcription start site region 41938
Tssr41939 4 59474817 to 59474843 26 - TSS region transcription start site region 41939
Tssr41940 4 59474858 to 59474875 17 - TSS region transcription start site region 41940
Tssr41941 4 59474880 to 59474898 18 - TSS region transcription start site region 41941
Tssr41942 4 59475901 to 59475921 20 - TSS region transcription start site region 41942
Tssr41943 4 59476275 to 59476289 14 - TSS region transcription start site region 41943
Tssr41944 4 59505897 to 59505907 10 - TSS region transcription start site region 41944
D4Mit243 4 59529357 to 59529501 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 243
Gm12529 4 59532747 to 59533014 267 + pseudogene predicted gene 12529
Tssr41945 4 59538075 to 59538087 12 - TSS region transcription start site region 41945
Cpgi14347 4 59548532 to 59549915 1383 CpG island CpG island 14347
1700018M17Rik 4 59549154 to 59549625 471 + pseudogene RIKEN cDNA 1700018M17 gene
Tssr41946 4 59549275 to 59549303 28 - TSS region transcription start site region 41946
Tssr41947 4 59549314 to 59549325 11 - TSS region transcription start site region 41947
D4Mit44 4 59552512 to 59552657 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 44