Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:57677895-61267918

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329 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vc 4 57190841 to 59041899 1851058 heritable phenotypic marker vacillans
Palm2 4 57568248 to 57717146 148898 + protein coding gene paralemmin 2
Pakap 4 57568248 to 57896984 328736 + protein coding gene paralemmin A kinase anchor protein
Tssr41854 4 57689442 to 57689451 9 - TSS region transcription start site region 41854
Tssr37371 4 57689511 to 57689525 14 + TSS region transcription start site region 37371
4930544N03Rik 4 57727765 to 57730419 2654 unclassified gene RIKEN cDNA 4930544N03 gene
Gm35099 4 57730081 to 57756022 25941 - lncRNA gene predicted gene, 35099
Tssr37372 4 57734717 to 57734736 19 + TSS region transcription start site region 37372
Tssr37373 4 57742041 to 57742054 13 + TSS region transcription start site region 37373
Tssr37374 4 57742076 to 57742086 10 + TSS region transcription start site region 37374
Gm12526 4 57757739 to 57763901 6162 - unclassified non-coding RNA gene predicted gene 12526
Gm24277 4 57762607 to 57762710 103 + snRNA gene predicted gene, 24277
Tssr1179 4 57779069 to 57779073 4 + TSS region transcription start site region 1179
Tssr37375 4 57781165 to 57781170 5 + TSS region transcription start site region 37375
Cpgi14333 4 57782108 to 57782463 355 CpG island CpG island 14333
Tssr37376 4 57782153 to 57782186 33 + TSS region transcription start site region 37376
Tssr37377 4 57782188 to 57782205 17 + TSS region transcription start site region 37377
Cpgi14334 4 57782867 to 57783243 376 CpG island CpG island 14334
Tssr37378 4 57792382 to 57792386 4 + TSS region transcription start site region 37378
Tssr37379 4 57813260 to 57813261 1 + TSS region transcription start site region 37379
Tssr37380 4 57821081 to 57821101 20 + TSS region transcription start site region 37380
Tssr37381 4 57845219 to 57845238 19 + TSS region transcription start site region 37381
Tssr37382 4 57845240 to 57845265 25 + TSS region transcription start site region 37382
Akap2 4 57845248 to 57896984 51736 + protein coding gene A kinase (PRKA) anchor protein 2
Tssr1180 4 57845268 to 57845273 5 + TSS region transcription start site region 1180
Tssr37383 4 57845277 to 57845288 11 + TSS region transcription start site region 37383
Tssr37384 4 57849156 to 57849160 4 + TSS region transcription start site region 37384
Tssr37385 4 57854711 to 57854735 24 + TSS region transcription start site region 37385
Tssr37386 4 57854738 to 57854754 16 + TSS region transcription start site region 37386
Tssr37387 4 57872809 to 57872817 8 + TSS region transcription start site region 37387
Gm26138 4 57877389 to 57877495 106 - snRNA gene predicted gene, 26138
Tssr37388 4 57877483 to 57877486 3 + TSS region transcription start site region 37388
Tssr1181 4 57887579 to 57887590 11 + TSS region transcription start site region 1181
Tssr37389 4 57892920 to 57892941 21 + TSS region transcription start site region 37389
Tssr37390 4 57892950 to 57892968 18 + TSS region transcription start site region 37390
Tssr37391 4 57892997 to 57893008 11 + TSS region transcription start site region 37391
Tssr37392 4 57893063 to 57893104 41 + TSS region transcription start site region 37392
Tssr37393 4 57893720 to 57893733 13 + TSS region transcription start site region 37393
Tssr37394 4 57893928 to 57893940 12 + TSS region transcription start site region 37394
Tssr37395 4 57894160 to 57894179 19 + TSS region transcription start site region 37395
D630039A03Rik 4 57908483 to 57916297 7814 - protein coding gene RIKEN cDNA D630039A03 gene
D4Mit295 4 57913346 to 57913446 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 295
Tssr41855 4 57915725 to 57915737 12 - TSS region transcription start site region 41855
Tssr41856 4 57915740 to 57915774 34 - TSS region transcription start site region 41856
Tssr41857 4 57916161 to 57916175 14 - TSS region transcription start site region 41857
Tssr41858 4 57916224 to 57916242 18 - TSS region transcription start site region 41858
Tssr41859 4 57916283 to 57916306 23 - TSS region transcription start site region 41859
Tssr41860 4 57916311 to 57916324 13 - TSS region transcription start site region 41860
Tssr41861 4 57916441 to 57916455 14 - TSS region transcription start site region 41861
Tssr1182 4 57916507 to 57916533 26 - TSS region transcription start site region 1182
Gm42293 4 57916639 to 57918420 1781 + lncRNA gene predicted gene, 42293
Gm42292 4 57921421 to 57923431 2010 - lncRNA gene predicted gene, 42292
Txn1 4 57943373 to 57956411 13038 - protein coding gene thioredoxin 1
Tssr41862 4 57943805 to 57943829 24 - TSS region transcription start site region 41862
Tssr41863 4 57951842 to 57951860 18 - TSS region transcription start site region 41863
Tssr41864 4 57951861 to 57951894 33 - TSS region transcription start site region 41864
Tssr41865 4 57953520 to 57953533 13 - TSS region transcription start site region 41865
Cpgi14335 4 57955516 to 57956951 1435 CpG island CpG island 14335
Tssr41866 4 57956283 to 57956298 15 - TSS region transcription start site region 41866
Tssr1183 4 57956311 to 57956358 47 - TSS region transcription start site region 1183
Tssr1184 4 57956416 to 57956424 8 - TSS region transcription start site region 1184
Gm35344 4 57956508 to 57968149 11641 + lncRNA gene predicted gene, 35344
Tssr37396 4 57956622 to 57956626 4 + TSS region transcription start site region 37396
Tssr37397 4 57956924 to 57956967 43 + TSS region transcription start site region 37397
Txndc8 4 57984027 to 58009124 25097 - protein coding gene thioredoxin domain containing 8
Tssr41867 4 58009074 to 58009083 9 - TSS region transcription start site region 41867
Tssr41868 4 58009090 to 58009101 11 - TSS region transcription start site region 41868
Tssr41869 4 58009117 to 58009133 16 - TSS region transcription start site region 41869
Gm35402 4 58034506 to 58065819 31313 + lncRNA gene predicted gene, 35402
Svep1 4 58042796 to 58206596 163800 - protein coding gene sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
D4Mit287 4 58094204 to 58094327 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 287
Gm26889 4 58178247 to 58206635 28388 + lincRNA gene predicted gene, 26889
Cpgi14336 4 58205698 to 58206650 952 CpG island CpG island 14336
Tssr41870 4 58206323 to 58206334 11 - TSS region transcription start site region 41870
Tssr41871 4 58206348 to 58206359 11 - TSS region transcription start site region 41871
Tssr41872 4 58206504 to 58206520 16 - TSS region transcription start site region 41872
Tssr41873 4 58206533 to 58206544 11 - TSS region transcription start site region 41873
Tssr41874 4 58206558 to 58206575 17 - TSS region transcription start site region 41874
Tssr41875 4 58206578 to 58206587 9 - TSS region transcription start site region 41875
Tssr41876 4 58206599 to 58206616 17 - TSS region transcription start site region 41876
Tssr41877 4 58206639 to 58206648 9 - TSS region transcription start site region 41877
Tssr41878 4 58206670 to 58206673 3 - TSS region transcription start site region 41878
Tssr41879 4 58206686 to 58206697 11 - TSS region transcription start site region 41879
Tssr41880 4 58206768 to 58206790 22 - TSS region transcription start site region 41880
Gm30907 4 58268019 to 58268196 177 - pseudogene predicted gene, 30907
Tssr37398 4 58285930 to 58285975 45 + TSS region transcription start site region 37398
Musk 4 58285960 to 58374303 88343 + protein coding gene muscle, skeletal, receptor tyrosine kinase
Tssr37399 4 58286064 to 58286068 4 + TSS region transcription start site region 37399
Tssr1185 4 58289129 to 58289138 9 + TSS region transcription start site region 1185
Tssr37400 4 58327268 to 58327279 11 + TSS region transcription start site region 37400
Cpgi14337 4 58366743 to 58366959 216 CpG island CpG island 14337
Cpgi14338 4 58373165 to 58373434 269 CpG island CpG island 14338
Lpar1 4 58435255 to 58553898 118643 - protein coding gene lysophosphatidic acid receptor 1
Tssr41881 4 58436852 to 58436864 12 - TSS region transcription start site region 41881
D4Mit1005 4 58439478 to 58439598 120 DNA segment DNA Segment, Chr 4 Massachusetts Institute of Technology 1005
Mir3095 4 58441012 to 58441098 86 - miRNA gene microRNA 3095
Tssr41882 4 58444116 to 58444120 4 - TSS region transcription start site region 41882
Tssr41883 4 58458932 to 58458939 7 - TSS region transcription start site region 41883
Tssr41884 4 58482098 to 58482110 12 - TSS region transcription start site region 41884
Gm12577 4 58483252 to 58483825 573 - pseudogene predicted gene 12577
Tssr41885 4 58483621 to 58483642 21 - TSS region transcription start site region 41885
Tssr41886 4 58499377 to 58499388 11 - TSS region transcription start site region 41886
Tssr41887 4 58499390 to 58499395 5 - TSS region transcription start site region 41887
Tssr41888 4 58499398 to 58499409 11 - TSS region transcription start site region 41888
Tssr41889 4 58499412 to 58499427 15 - TSS region transcription start site region 41889
Tssr41890 4 58529948 to 58529951 3 - TSS region transcription start site region 41890
Tssr41891 4 58545701 to 58545722 21 - TSS region transcription start site region 41891
Cpgi14339 4 58552841 to 58553951 1110 CpG island CpG island 14339
Tssr41892 4 58553171 to 58553180 9 - TSS region transcription start site region 41892
Tssr41893 4 58553187 to 58553261 74 - TSS region transcription start site region 41893
Tssr41894 4 58553263 to 58553275 12 - TSS region transcription start site region 41894
Tssr41895 4 58553288 to 58553298 10 - TSS region transcription start site region 41895
Tssr41896 4 58553311 to 58553322 11 - TSS region transcription start site region 41896
Tssr41897 4 58553747 to 58553770 23 - TSS region transcription start site region 41897
Gm12578 4 58589764 to 58590180 416 + pseudogene predicted gene 12578
Gm12579 4 58611058 to 58611840 782 + pseudogene predicted gene 12579
Tssr37401 4 58644603 to 58644608 5 + TSS region transcription start site region 37401
Tssr37402 4 58645185 to 58645226 41 + TSS region transcription start site region 37402
Gm12580 4 58648392 to 58658592 10200 - lincRNA gene predicted gene 12580
Olfr267 4 58784779 to 58785720 941 - protein coding gene olfactory receptor 267
Tssr41898 4 58797597 to 58797601 4 - TSS region transcription start site region 41898
Ecpas 4 58798911 to 58912749 113838 - protein coding gene Ecm29 proteasome adaptor and scaffold
Tssr41899 4 58803749 to 58803764 15 - TSS region transcription start site region 41899
Tssr41900 4 58839914 to 58839948 34 - TSS region transcription start site region 41900
Tssr41901 4 58839984 to 58839997 13 - TSS region transcription start site region 41901
Tssr41902 4 58840743 to 58840774 31 - TSS region transcription start site region 41902
Tssr41903 4 58844955 to 58844972 17 - TSS region transcription start site region 41903
Tssr41904 4 58867168 to 58867181 13 - TSS region transcription start site region 41904
Tssr41905 4 58878854 to 58878859 5 - TSS region transcription start site region 41905
Tssr41906 4 58879081 to 58879093 12 - TSS region transcription start site region 41906
Tssr41907 4 58885472 to 58885502 30 - TSS region transcription start site region 41907
Tssr41908 4 58893669 to 58893673 4 - TSS region transcription start site region 41908
Tssr41909 4 58907556 to 58907561 5 - TSS region transcription start site region 41909
Tssr41910 4 58910143 to 58910154 11 - TSS region transcription start site region 41910
Cpgi14340 4 58911140 to 58913029 1889 CpG island CpG island 14340
Tssr41911 4 58911913 to 58911945 32 - TSS region transcription start site region 41911
Tssr41912 4 58912037 to 58912050 13 - TSS region transcription start site region 41912
Tssr41913 4 58912081 to 58912120 39 - TSS region transcription start site region 41913
Tssr41914 4 58912203 to 58912238 35 - TSS region transcription start site region 41914
Tssr41915 4 58912249 to 58912276 27 - TSS region transcription start site region 41915
Tssr41916 4 58912649 to 58912662 13 - TSS region transcription start site region 41916
Tssr41917 4 58912678 to 58912776 98 - TSS region transcription start site region 41917
D4Mit151 4 58913499 to 58913648 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 151
Tssr41918 4 58915472 to 58915486 14 - TSS region transcription start site region 41918
Gm26400 4 58938025 to 58938109 84 + rRNA gene predicted gene, 26400
Cpgi14341 4 58943438 to 58944087 649 CpG island CpG island 14341
Tssr37403 4 58943575 to 58943638 63 + TSS region transcription start site region 37403
Zkscan16 4 58943628 to 58958355 14727 + protein coding gene zinc finger with KRAB and SCAN domains 16
Cpgi14342 4 58956819 to 58957211 392 CpG island CpG island 14342
Ptgr1 4 58965590 to 58987131 21541 - protein coding gene prostaglandin reductase 1
Tssr41919 4 58981882 to 58981886 4 - TSS region transcription start site region 41919
Tssr37404 4 58985591 to 58985613 22 + TSS region transcription start site region 37404
Tssr41920 4 58987068 to 58987086 18 - TSS region transcription start site region 41920
Tssr41921 4 58987095 to 58987116 21 - TSS region transcription start site region 41921
Tssr41922 4 58987117 to 58987131 14 - TSS region transcription start site region 41922
Tssr37405 4 58994309 to 58994321 12 + TSS region transcription start site region 37405
Dnajc25 4 58994800 to 59023398 28598 + protein coding gene DnaJ heat shock protein family (Hsp40) member C25
4930432F03Rik 4 59002337 to 59003074 737 unclassified gene RIKEN cDNA 4930432F03 gene
Cpgi14343 4 59002747 to 59003788 1041 CpG island CpG island 14343
Tssr37406 4 59003121 to 59003215 94 + TSS region transcription start site region 37406
Gm20503 4 59003210 to 59041888 38678 + protein coding gene predicted gene 20503
Tssr37407 4 59017666 to 59017713 47 + TSS region transcription start site region 37407
Tssr37408 4 59033205 to 59033217 12 + TSS region transcription start site region 37408
Cpgi14344 4 59034918 to 59036056 1138 CpG island CpG island 14344
Gng10 4 59035156 to 59041899 6743 + protein coding gene guanine nucleotide binding protein (G protein), gamma 10
Tssr37409 4 59035175 to 59035247 72 + TSS region transcription start site region 37409
Tssr1186 4 59035250 to 59035261 11 + TSS region transcription start site region 1186
Tssr37410 4 59035464 to 59035478 14 + TSS region transcription start site region 37410
Tssr37411 4 59035493 to 59035501 8 + TSS region transcription start site region 37411
Shoc1 4 59041984 to 59113971 71987 - protein coding gene shortage in chiasmata 1
Gm12593 4 59090187 to 59090929 742 + pseudogene predicted gene 12593
Tssr41923 4 59117833 to 59117843 10 - TSS region transcription start site region 41923
Gm35527 4 59117970 to 59135814 17844 + lncRNA gene predicted gene, 35527
Tssr1187 4 59134598 to 59134600 2 - TSS region transcription start site region 1187
Gm12594 4 59135068 to 59137454 2386 - sense intronic lncRNA gene predicted gene 12594
Rpsa-ps11 4 59162268 to 59163156 888 - pseudogene ribosomal protein SA, pseudogene 11
Cpgi14345 4 59188825 to 59190187 1362 CpG island CpG island 14345
Tssr37412 4 59189202 to 59189213 11 + TSS region transcription start site region 37412
Tssr37413 4 59189240 to 59189254 14 + TSS region transcription start site region 37413
Ugcg 4 59189257 to 59222833 33576 + protein coding gene UDP-glucose ceramide glucosyltransferase
Tssr37414 4 59189440 to 59189555 115 + TSS region transcription start site region 37414
Tssr37415 4 59189561 to 59189586 25 + TSS region transcription start site region 37415
Tssr37416 4 59189639 to 59189646 7 + TSS region transcription start site region 37416
Tssr37417 4 59189666 to 59189677 11 + TSS region transcription start site region 37417
Tssr37418 4 59197560 to 59197564 4 + TSS region transcription start site region 37418
Tssr37419 4 59214156 to 59214176 20 + TSS region transcription start site region 37419
Tssr37420 4 59221619 to 59221632 13 + TSS region transcription start site region 37420
Tssr41924 4 59254274 to 59254286 12 - TSS region transcription start site region 41924
Tssr37421 4 59260036 to 59260053 17 + TSS region transcription start site region 37421
Gm12596 4 59260051 to 59263269 3218 + lincRNA gene predicted gene 12596
Tssr37422 4 59262990 to 59263002 12 + TSS region transcription start site region 37422
Gm35578 4 59269203 to 59281709 12506 - lncRNA gene predicted gene, 35578
Tssr37423 4 59287378 to 59287393 15 + TSS region transcription start site region 37423
Tssr37424 4 59287398 to 59287414 16 + TSS region transcription start site region 37424
Tssr37425 4 59287428 to 59287451 23 + TSS region transcription start site region 37425
Susd1 4 59314683 to 59438633 123950 - protein coding gene sushi domain containing 1
Tssr41925 4 59315795 to 59315813 18 - TSS region transcription start site region 41925
Tssr41926 4 59331731 to 59331743 12 - TSS region transcription start site region 41926
Tssr41927 4 59331771 to 59331786 15 - TSS region transcription start site region 41927
Tssr37426 4 59331995 to 59332009 14 + TSS region transcription start site region 37426