Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:41086799-41546807

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aqp3 4 41092724 to 41098183 5459 - protein coding gene aquaporin 3
Tssr41298 4 41093356 to 41093368 12 - TSS region transcription start site region 41298
Tssr41299 4 41093423 to 41093440 17 - TSS region transcription start site region 41299
Tssr41300 4 41093465 to 41093477 12 - TSS region transcription start site region 41300
Tssr41301 4 41093520 to 41093532 12 - TSS region transcription start site region 41301
Tssr41302 4 41093590 to 41093601 11 - TSS region transcription start site region 41302
Tssr41303 4 41093668 to 41093689 21 - TSS region transcription start site region 41303
Tssr41304 4 41094733 to 41094744 11 - TSS region transcription start site region 41304
Tssr41305 4 41094816 to 41094844 28 - TSS region transcription start site region 41305
Tssr41306 4 41094887 to 41094927 40 - TSS region transcription start site region 41306
Cpgi14150 4 41097851 to 41098381 530 CpG island CpG island 14150
Tssr41307 4 41098174 to 41098190 16 - TSS region transcription start site region 41307
Nol6 4 41114427 to 41124339 9912 - protein coding gene nucleolar protein family 6 (RNA-associated)
Tssr41308 4 41114682 to 41114700 18 - TSS region transcription start site region 41308
Cpgi14151 4 41124174 to 41124540 366 CpG island CpG island 14151
Tssr41309 4 41124224 to 41124285 61 - TSS region transcription start site region 41309
Tssr1144 4 41124287 to 41124292 5 - TSS region transcription start site region 1144
Tssr41310 4 41124292 to 41124316 24 - TSS region transcription start site region 41310
Gm12402 4 41132511 to 41132844 333 - pseudogene predicted gene 12402
Cpgi14152 4 41134928 to 41136470 1542 CpG island CpG island 14152
Tssr36835 4 41135499 to 41135527 28 + TSS region transcription start site region 36835
Tssr36836 4 41135543 to 41135554 11 + TSS region transcription start site region 36836
Tssr36837 4 41135569 to 41135638 69 + TSS region transcription start site region 36837
Tssr36838 4 41135642 to 41135653 11 + TSS region transcription start site region 36838
Tssr36839 4 41135654 to 41135659 5 + TSS region transcription start site region 36839
Tssr36840 4 41135684 to 41135714 30 + TSS region transcription start site region 36840
Tssr1145 4 41135730 to 41135741 11 + TSS region transcription start site region 1145
Tssr36841 4 41135812 to 41135898 86 + TSS region transcription start site region 36841
Tssr36842 4 41135985 to 41135992 7 + TSS region transcription start site region 36842
Tssr36843 4 41135994 to 41136069 75 + TSS region transcription start site region 36843
Ube2r2 4 41136021 to 41193370 57349 + protein coding gene ubiquitin-conjugating enzyme E2R 2
Tssr36844 4 41136074 to 41136085 11 + TSS region transcription start site region 36844
Tssr36845 4 41136092 to 41136103 11 + TSS region transcription start site region 36845
Tssr1146 4 41138414 to 41138419 5 + TSS region transcription start site region 1146
Tssr36846 4 41152975 to 41152984 9 + TSS region transcription start site region 36846
Gm12403 4 41168646 to 41169604 958 + pseudogene predicted gene 12403
Gm24650 4 41172742 to 41172844 102 - snRNA gene predicted gene, 24650
2310029O18Rik 4 41177453 to 41179632 2179 unclassified gene RIKEN cDNA 2310029O18 gene
Tssr36847 4 41190642 to 41190656 14 + TSS region transcription start site region 36847
Tssr36848 4 41190919 to 41190976 57 + TSS region transcription start site region 36848
Tssr36849 4 41190979 to 41191010 31 + TSS region transcription start site region 36849
Tssr36850 4 41191062 to 41191110 48 + TSS region transcription start site region 36850
Tssr36851 4 41191183 to 41191222 39 + TSS region transcription start site region 36851
Tssr41311 4 41191229 to 41191240 11 - TSS region transcription start site region 41311
Tssr41312 4 41191242 to 41191255 13 - TSS region transcription start site region 41312
Ubap2 4 41194313 to 41275144 80831 - protein coding gene ubiquitin-associated protein 2
Gm22888 4 41203057 to 41203133 76 - snoRNA gene predicted gene, 22888
Tssr41313 4 41203583 to 41203593 10 - TSS region transcription start site region 41313
Tssr41314 4 41206284 to 41206300 16 - TSS region transcription start site region 41314
Tssr41315 4 41207026 to 41207037 11 - TSS region transcription start site region 41315
Tssr41316 4 41207058 to 41207066 8 - TSS region transcription start site region 41316
Gm24837 4 41211502 to 41211582 80 - snoRNA gene predicted gene, 24837
Tssr41317 4 41211858 to 41211900 42 - TSS region transcription start site region 41317
Gm23090 4 41213776 to 41213853 77 - snoRNA gene predicted gene, 23090
Gm12401 4 41252617 to 41252844 227 + pseudogene predicted gene 12401
D4Ertd58e 4 41261257 to 41261490 233 DNA segment DNA segment, Chr 4, ERATO Doi 58, expressed
Cpgi14153 4 41274589 to 41275856 1267 CpG island CpG island 14153
Tssr41318 4 41275091 to 41275118 27 - TSS region transcription start site region 41318
Tssr41319 4 41275274 to 41275283 9 - TSS region transcription start site region 41319
Tssr41320 4 41275296 to 41275309 13 - TSS region transcription start site region 41320
Tssr41321 4 41275322 to 41275336 14 - TSS region transcription start site region 41321
Tssr41322 4 41275348 to 41275359 11 - TSS region transcription start site region 41322
Tssr36852 4 41275486 to 41275497 11 + TSS region transcription start site region 36852
Tssr36853 4 41275700 to 41275749 49 + TSS region transcription start site region 36853
Gm42273 4 41281625 to 41285141 3516 - lncRNA gene predicted gene, 42273
Tssr1147 4 41284355 to 41284356 1 + TSS region transcription start site region 1147
Dcaf12 4 41291300 to 41314889 23589 - protein coding gene DDB1 and CUL4 associated factor 12
n-R5s183 4 41303158 to 41303272 114 + rRNA gene nuclear encoded rRNA 5S 183
Gm26049 4 41312091 to 41312198 107 - snRNA gene predicted gene, 26049
Tssr41323 4 41312926 to 41312930 4 - TSS region transcription start site region 41323
Tssr41324 4 41313429 to 41313437 8 - TSS region transcription start site region 41324
Tssr41325 4 41313902 to 41313914 12 - TSS region transcription start site region 41325
Cpgi14154 4 41314188 to 41315159 971 CpG island CpG island 14154
Tssr36854 4 41314321 to 41314359 38 + TSS region transcription start site region 36854
Tssr41326 4 41314706 to 41314723 17 - TSS region transcription start site region 41326
Tssr41327 4 41314727 to 41314758 31 - TSS region transcription start site region 41327
Tssr41328 4 41314778 to 41314787 9 - TSS region transcription start site region 41328
Tssr41329 4 41314797 to 41314802 5 - TSS region transcription start site region 41329
Tssr41330 4 41314814 to 41314859 45 - TSS region transcription start site region 41330
Tssr41331 4 41314877 to 41314889 12 - TSS region transcription start site region 41331
Tssr36855 4 41314901 to 41314914 13 + TSS region transcription start site region 36855
Tssr36856 4 41314922 to 41314970 48 + TSS region transcription start site region 36856
Gm46891 4 41314928 to 41321287 6359 + lncRNA gene predicted gene, 46891
Tssr41332 4 41316693 to 41316708 15 - TSS region transcription start site region 41332
Tssr41333 4 41316709 to 41316716 7 - TSS region transcription start site region 41333
Tssr1148 4 41316730 to 41316733 3 - TSS region transcription start site region 1148
Tssr41334 4 41316743 to 41316756 13 - TSS region transcription start site region 41334
Tssr36857 4 41316799 to 41316807 8 + TSS region transcription start site region 36857
Tssr36858 4 41316809 to 41316830 21 + TSS region transcription start site region 36858
Tssr36859 4 41316839 to 41316848 9 + TSS region transcription start site region 36859
Tssr36860 4 41316855 to 41316861 6 + TSS region transcription start site region 36860
Gm26084 4 41345848 to 41345951 103 - snRNA gene predicted gene, 26084
Cpgi14155 4 41348771 to 41349626 855 CpG island CpG island 14155
Ubap1 4 41348996 to 41389766 40770 + protein coding gene ubiquitin-associated protein 1
Tssr36861 4 41348997 to 41349008 11 + TSS region transcription start site region 36861
Tssr36862 4 41349028 to 41349064 36 + TSS region transcription start site region 36862
Tssr36863 4 41349305 to 41349322 17 + TSS region transcription start site region 36863
Tssr36864 4 41352609 to 41352615 6 + TSS region transcription start site region 36864
Tssr36865 4 41355866 to 41355872 6 + TSS region transcription start site region 36865
Tssr36866 4 41358885 to 41358899 14 + TSS region transcription start site region 36866
Tssr36867 4 41369587 to 41369590 3 + TSS region transcription start site region 36867
Tssr36868 4 41372318 to 41372320 2 + TSS region transcription start site region 36868
Tssr36869 4 41379540 to 41379559 19 + TSS region transcription start site region 36869
Tssr36870 4 41388025 to 41388041 16 + TSS region transcription start site region 36870
Kif24 4 41390745 to 41464887 74142 - protein coding gene kinesin family member 24
Tssr41335 4 41422619 to 41422623 4 - TSS region transcription start site region 41335
Cpgi14156 4 41464403 to 41465538 1135 CpG island CpG island 14156
Tssr41336 4 41464641 to 41464667 26 - TSS region transcription start site region 41336
Tssr41337 4 41464816 to 41464892 76 - TSS region transcription start site region 41337
Tssr36871 4 41465134 to 41465159 25 + TSS region transcription start site region 36871
Nudt2 4 41465151 to 41480926 15775 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 2
Tssr41338 4 41490059 to 41490062 3 - TSS region transcription start site region 41338
Myorg 4 41495604 to 41503076 7472 - protein coding gene myogenesis regulating glycosidase (putative)
Tssr41339 4 41496319 to 41496333 14 - TSS region transcription start site region 41339
Cpgi14157 4 41497389 to 41499526 2137 CpG island CpG island 14157
Tssr41340 4 41498221 to 41498243 22 - TSS region transcription start site region 41340
Cpgi14158 4 41502888 to 41503294 406 CpG island CpG island 14158
Tssr41341 4 41503046 to 41503122 76 - TSS region transcription start site region 41341
1110017D15Rik 4 41505009 to 41517333 12324 - protein coding gene RIKEN cDNA 1110017D15 gene
Cpgi14159 4 41506833 to 41507641 808 CpG island CpG island 14159
Tssr41342 4 41507725 to 41507738 13 - TSS region transcription start site region 41342
Tssr41343 4 41507741 to 41507775 34 - TSS region transcription start site region 41343
Tssr41344 4 41507783 to 41507791 8 - TSS region transcription start site region 41344
Tssr41345 4 41508963 to 41508969 6 - TSS region transcription start site region 41345
Tssr41346 4 41517280 to 41517292 12 - TSS region transcription start site region 41346
Tssr41347 4 41517301 to 41517323 22 - TSS region transcription start site region 41347
Tssr41348 4 41517326 to 41517337 11 - TSS region transcription start site region 41348
Tssr36872 4 41517407 to 41517416 9 + TSS region transcription start site region 36872
Tssr36873 4 41517423 to 41517436 13 + TSS region transcription start site region 36873
Fam219aos 4 41517437 to 41518929 1492 + antisense lncRNA gene family with sequence similarity 219, member A, opposite strand
Tssr36874 4 41517438 to 41517447 9 + TSS region transcription start site region 36874
Fam219a 4 41517691 to 41569533 51842 - protein coding gene family with sequence similarity 219, member A
Tssr41349 4 41520305 to 41520325 20 - TSS region transcription start site region 41349
Gm12404 4 41520405 to 41521448 1043 + lncRNA gene predicted gene 12404