Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:39223728-40197169

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25581 4 39259631 to 39259794 163 - snRNA gene predicted gene, 25581
Tssr41233 4 39259790 to 39259796 6 - TSS region transcription start site region 41233
Gm12383 4 39263561 to 39264303 742 + pseudogene predicted gene 12383
Gm23607 4 39295463 to 39295588 125 + snoRNA gene predicted gene, 23607
Bdln6 4 39373448 to 39373612 164 QTL body length 6
D4Mit4 4 39373448 to 39373612 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 4
Scon1 4 39373448 to 39373612 164 QTL sucrose consumption 1
Sluc18 4 39373448 to 39373612 164 QTL susceptibility to lung cancer 18
D4Dcr34 4 39373500 to 39373610 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 34
Gm42270 4 39383244 to 39388661 5417 + pseudogene predicted gene, 42270
Gm17094 4 39400007 to 39420690 20683 - antisense lncRNA gene predicted gene 17094
Tssr36788 4 39450268 to 39450314 46 + TSS region transcription start site region 36788
1700009N14Rik 4 39450295 to 39451776 1481 + protein coding gene RIKEN cDNA 1700009N14 gene
Tssr36789 4 39450316 to 39450331 15 + TSS region transcription start site region 36789
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
D4Mit196 4 39452126 to 39452312 186 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 196
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
D4Dcr35 4 39478641 to 39478751 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 35
Gm42271 4 39495705 to 39508994 13289 - lncRNA gene predicted gene, 42271
Gm42272 4 39708728 to 39712169 3441 - lncRNA gene predicted gene, 42272
Gm34007 4 39714710 to 39791320 76610 - lncRNA gene predicted gene, 34007
Tssr1138 4 39740758 to 39740759 1 + TSS region transcription start site region 1138
Gm12385 4 39767618 to 39768412 794 + pseudogene predicted gene 12385
Gm34071 4 39788744 to 39792398 3654 + lncRNA gene predicted gene, 34071
Gm12384 4 39823722 to 39824365 643 + pseudogene predicted gene 12384
Gm12386 4 39844187 to 39844874 687 - pseudogene predicted gene 12386
Gm22850 4 39865687 to 39865768 81 + snRNA gene predicted gene, 22850
Gm12387 4 39895208 to 39896162 954 - pseudogene predicted gene 12387
Gm34132 4 39936874 to 39952708 15834 - lncRNA gene predicted gene, 34132
Gm26087 4 39981497 to 39981558 61 - snRNA gene predicted gene, 26087
Tssr41234 4 40063792 to 40063811 19 - TSS region transcription start site region 41234
Gm12388 4 40069139 to 40070981 1842 + pseudogene predicted gene 12388
Gm12389 4 40116816 to 40117233 417 - pseudogene predicted gene 12389
Cpgi14134 4 40142842 to 40144030 1188 CpG island CpG island 14134
Tssr36790 4 40143080 to 40143107 27 + TSS region transcription start site region 36790
Aco1 4 40143081 to 40198338 55257 + protein coding gene aconitase 1
Tssr36791 4 40143368 to 40143444 76 + TSS region transcription start site region 36791
Tssr36792 4 40143460 to 40143502 42 + TSS region transcription start site region 36792
Tssr36793 4 40143510 to 40143521 11 + TSS region transcription start site region 36793
Tssr36794 4 40155821 to 40155831 10 + TSS region transcription start site region 36794
Tssr36795 4 40160048 to 40160050 2 + TSS region transcription start site region 36795
Tssr36796 4 40160296 to 40160301 5 + TSS region transcription start site region 36796
Tssr36797 4 40181979 to 40181994 15 + TSS region transcription start site region 36797
Tssr36798 4 40183572 to 40183592 20 + TSS region transcription start site region 36798
Tssr36799 4 40184932 to 40184944 12 + TSS region transcription start site region 36799
Tssr36800 4 40184950 to 40184989 39 + TSS region transcription start site region 36800
Tssr36801 4 40193740 to 40193745 5 + TSS region transcription start site region 36801