Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:39058728-40362169

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit236 4 39111944 to 39112145 201 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 236
Pcyts2 4 39111944 to 39112145 201 QTL plasmacytoma susceptibility 2
Hrtfm3 4 39111944 to 39112145 201 QTL heart failure modifier 3
Gm18004 4 39154610 to 39155248 638 - pseudogene predicted gene, 18004
Gm25581 4 39259631 to 39259794 163 - snRNA gene predicted gene, 25581
Tssr41233 4 39259790 to 39259796 6 - TSS region transcription start site region 41233
Gm12383 4 39263561 to 39264303 742 + pseudogene predicted gene 12383
Gm23607 4 39295463 to 39295588 125 + snoRNA gene predicted gene, 23607
Bdln6 4 39373448 to 39373612 164 QTL body length 6
D4Mit4 4 39373448 to 39373612 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 4
Scon1 4 39373448 to 39373612 164 QTL sucrose consumption 1
Sluc18 4 39373448 to 39373612 164 QTL susceptibility to lung cancer 18
D4Dcr34 4 39373500 to 39373610 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 34
Gm42270 4 39383244 to 39388661 5417 + pseudogene predicted gene, 42270
Gm17094 4 39400007 to 39420690 20683 - antisense lncRNA gene predicted gene 17094
Tssr36788 4 39450268 to 39450314 46 + TSS region transcription start site region 36788
1700009N14Rik 4 39450295 to 39451776 1481 + protein coding gene RIKEN cDNA 1700009N14 gene
Tssr36789 4 39450316 to 39450331 15 + TSS region transcription start site region 36789
D4Mit196 4 39452126 to 39452312 186 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 196
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
D4Dcr35 4 39478641 to 39478751 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 35
Gm42271 4 39495705 to 39508994 13289 - lncRNA gene predicted gene, 42271
Gm42272 4 39708728 to 39712169 3441 - lncRNA gene predicted gene, 42272
Gm34007 4 39714710 to 39791320 76610 - lncRNA gene predicted gene, 34007
Tssr1138 4 39740758 to 39740759 1 + TSS region transcription start site region 1138
Gm12385 4 39767618 to 39768412 794 + pseudogene predicted gene 12385
Gm34071 4 39788744 to 39792398 3654 + lncRNA gene predicted gene, 34071
Gm12384 4 39823722 to 39824365 643 + pseudogene predicted gene 12384
Gm12386 4 39844187 to 39844874 687 - pseudogene predicted gene 12386
Gm22850 4 39865687 to 39865768 81 + snRNA gene predicted gene, 22850
Gm12387 4 39895208 to 39896162 954 - pseudogene predicted gene 12387
Gm34132 4 39936874 to 39952708 15834 - lncRNA gene predicted gene, 34132
Gm26087 4 39981497 to 39981558 61 - snRNA gene predicted gene, 26087
Tssr41234 4 40063792 to 40063811 19 - TSS region transcription start site region 41234
Gm12388 4 40069139 to 40070981 1842 + pseudogene predicted gene 12388
Gm12389 4 40116816 to 40117233 417 - pseudogene predicted gene 12389
Cpgi14134 4 40142842 to 40144030 1188 CpG island CpG island 14134
Tssr36790 4 40143080 to 40143107 27 + TSS region transcription start site region 36790
Aco1 4 40143081 to 40198338 55257 + protein coding gene aconitase 1
Tssr36791 4 40143368 to 40143444 76 + TSS region transcription start site region 36791
Tssr36792 4 40143460 to 40143502 42 + TSS region transcription start site region 36792
Tssr36793 4 40143510 to 40143521 11 + TSS region transcription start site region 36793
Tssr36794 4 40155821 to 40155831 10 + TSS region transcription start site region 36794
Tssr36795 4 40160048 to 40160050 2 + TSS region transcription start site region 36795
Tssr36796 4 40160296 to 40160301 5 + TSS region transcription start site region 36796
Tssr36797 4 40181979 to 40181994 15 + TSS region transcription start site region 36797
Tssr36798 4 40183572 to 40183592 20 + TSS region transcription start site region 36798
Tssr36799 4 40184932 to 40184944 12 + TSS region transcription start site region 36799
Tssr36800 4 40184950 to 40184989 39 + TSS region transcription start site region 36800
Tssr36801 4 40193740 to 40193745 5 + TSS region transcription start site region 36801
Ddx58 4 40203777 to 40239825 36048 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Tssr41235 4 40210133 to 40210138 5 - TSS region transcription start site region 41235
Tssr41236 4 40214356 to 40214366 10 - TSS region transcription start site region 41236
Tssr41237 4 40220578 to 40220605 27 - TSS region transcription start site region 41237
Tssr41238 4 40234404 to 40234434 30 - TSS region transcription start site region 41238
Tssr41239 4 40239713 to 40239727 14 - TSS region transcription start site region 41239
Tssr41240 4 40239746 to 40239766 20 - TSS region transcription start site region 41240
Tssr41241 4 40239779 to 40239831 52 - TSS region transcription start site region 41241
Topors 4 40259606 to 40269841 10235 - protein coding gene topoisomerase I binding, arginine/serine-rich
Tssr1139 4 40260464 to 40260467 3 + TSS region transcription start site region 1139
Tssr36802 4 40260503 to 40260519 16 + TSS region transcription start site region 36802
Tssr41242 4 40261680 to 40261691 11 - TSS region transcription start site region 41242
Cpgi14135 4 40267975 to 40269024 1049 CpG island CpG island 14135
Tssr41243 4 40268444 to 40268565 121 - TSS region transcription start site region 41243
Cpgi14136 4 40269406 to 40270054 648 CpG island CpG island 14136
Tssr36803 4 40269563 to 40269595 32 + TSS region transcription start site region 36803
Smim27 4 40269579 to 40270221 642 + protein coding gene small integral membrane protein 27
Tssr41244 4 40269778 to 40269849 71 - TSS region transcription start site region 41244
Tssr36804 4 40269887 to 40269911 24 + TSS region transcription start site region 36804
Tssr36805 4 40269915 to 40269956 41 + TSS region transcription start site region 36805
Ndufb6 4 40270591 to 40279421 8830 - protein coding gene NADH:ubiquinone oxidoreductase subunit B6
Cpgi14137 4 40278848 to 40279792 944 CpG island CpG island 14137
Tssr41245 4 40279340 to 40279381 41 - TSS region transcription start site region 41245
Tssr41246 4 40279389 to 40279434 45 - TSS region transcription start site region 41246
Cpgi14138 4 40308111 to 40308315 204 CpG island CpG island 14138
4930509K18Rik 4 40313232 to 40317719 4487 + lincRNA gene RIKEN cDNA 4930509K18 gene