Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:142249428-144545160

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gasa1 4 124161300 to 142711450 18550150 QTL gastritis type A susceptibility locus 1
Tlsr2 4 124371164 to 142504390 18133226 QTL thymic lymphoma suppressor region 2
Cinda3 4 137890537 to 142562902 4672365 QTL cytokine induced activation 3
1700085G17Rik 4 142255660 to 142256075 415 unclassified gene RIKEN cDNA 1700085G17 gene
Tssr40127 4 142307708 to 142307742 34 + TSS region transcription start site region 40127
Gm13052 4 142307765 to 142346475 38710 - lincRNA gene predicted gene 13052
Gm46875 4 142348717 to 142361007 12290 + lncRNA gene predicted gene, 46875
Gm42339 4 142407124 to 142414307 7183 - lncRNA gene predicted gene, 42339
C030029H13Rik 4 142421677 to 142422952 1275 unclassified gene Riken cDNA C030029H13 gene
Tssr44427 4 142422175 to 142422177 2 - TSS region transcription start site region 44427
Tssr44428 4 142453532 to 142453536 4 - TSS region transcription start site region 44428
Tssr44429 4 142460398 to 142460412 14 - TSS region transcription start site region 44429
Gm35752 4 142495588 to 142499568 3980 + lncRNA gene predicted gene, 35752
Tpnr1 4 142504302 to 142504390 88 QTL thermal pain response 1
D4Mit13 4 142504302 to 142504390 88 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 13
Heal22 4 142504302 to 142504390 88 QTL wound healing/regeneration 22
Cdcs9 4 142504302 to 142504390 88 QTL cytokine deficiency colitis susceptibility 9
D4Mit126 4 142562755 to 142562902 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 126
Mts1 4 142562755 to 142562902 147 QTL mammary tumor susceptibility 1
6330411D24Rik 4 142598441 to 143074839 476398 - unclassified non-coding RNA gene RIKEN cDNA 6330411D24 gene
Gm42342 4 142631738 to 142635423 3685 + lncRNA gene predicted gene, 42342
Gm42340 4 142641817 to 142663123 21306 + lncRNA gene predicted gene, 42340
Gm42341 4 142643385 to 142647566 4181 - lncRNA gene predicted gene, 42341
Tssr44430 4 142656076 to 142656078 2 - TSS region transcription start site region 44430
D4Mit343 4 142711337 to 142711450 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 343
D4Mit343.2 4 142711474 to 142711589 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 343.2
D4Mit354 4 142770527 to 142770636 109 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 354
Gm37624 4 142790808 to 142791026 218 + unclassified gene predicted gene, 37624
Cpgi15254 4 142854050 to 142854206 156 CpG island CpG island 15254
Cpgi15255 4 142909612 to 142909921 309 CpG island CpG island 15255
Tssr1365 4 142996196 to 142996200 4 + TSS region transcription start site region 1365
Cpgi15256 4 143074295 to 143074509 214 CpG island CpG island 15256
5830426C09Rik 4 143102688 to 143106330 3642 unclassified gene RIKEN cDNA 5830426C09 gene
Prdm2 4 143107391 to 143212736 105345 - protein coding gene PR domain containing 2, with ZNF domain
Tssr44431 4 143133819 to 143133842 23 - TSS region transcription start site region 44431
Mir7021 4 143136100 to 143136162 62 - miRNA gene microRNA 7021
Tssr44432 4 143136640 to 143136644 4 - TSS region transcription start site region 44432
Gm13038 4 143152572 to 143153030 458 + pseudogene predicted gene 13038
Tssr44433 4 143161329 to 143161337 8 - TSS region transcription start site region 44433
Cpgi15257 4 143161563 to 143162689 1126 CpG island CpG island 15257
Tssr44434 4 143162097 to 143162134 37 - TSS region transcription start site region 44434
Tssr44435 4 143162140 to 143162172 32 - TSS region transcription start site region 44435
Gm13039 4 143166603 to 143167396 793 + pseudogene predicted gene 13039
Gm22039 4 143204065 to 143204196 131 + snoRNA gene predicted gene, 22039
Cpgi15258 4 143211808 to 143213337 1529 CpG island CpG island 15258
Gm6687 4 143211901 to 143215001 3100 protein coding gene predicted gene 6687
Tssr44436 4 143212667 to 143212678 11 - TSS region transcription start site region 44436
Tssr44437 4 143212691 to 143212728 37 - TSS region transcription start site region 44437
Gm13050 4 143242027 to 143243367 1340 - pseudogene predicted gene 13050
Tssr44438 4 143243270 to 143243291 21 - TSS region transcription start site region 44438
Tssr44439 4 143245887 to 143245890 3 - TSS region transcription start site region 44439
Pdpn 4 143267431 to 143299564 32133 - protein coding gene podoplanin
Tssr44440 4 143267902 to 143267906 4 - TSS region transcription start site region 44440
Tssr44441 4 143268071 to 143268103 32 - TSS region transcription start site region 44441
Tssr44442 4 143268299 to 143268307 8 - TSS region transcription start site region 44442
Tssr44443 4 143274029 to 143274034 5 - TSS region transcription start site region 44443
Tssr44444 4 143276096 to 143276106 10 - TSS region transcription start site region 44444
Tssr44445 4 143276149 to 143276166 17 - TSS region transcription start site region 44445
Tssr44446 4 143278898 to 143278915 17 - TSS region transcription start site region 44446
Tssr44447 4 143299275 to 143299290 15 - TSS region transcription start site region 44447
Tssr44448 4 143299465 to 143299482 17 - TSS region transcription start site region 44448
Tssr44449 4 143299498 to 143299511 13 - TSS region transcription start site region 44449
Gm26313 4 143340399 to 143340706 307 + unclassified non-coding RNA gene predicted gene, 26313
Cpgi15259 4 143349496 to 143350961 1465 CpG island CpG island 15259
Lrrc38 4 143349757 to 143371032 21275 + protein coding gene leucine rich repeat containing 38
Tssr40128 4 143349808 to 143349834 26 + TSS region transcription start site region 40128
Tssr40129 4 143350027 to 143350039 12 + TSS region transcription start site region 40129
Cpgi15260 4 143389089 to 143389551 462 CpG island CpG island 15260
Anp32b-ps1 4 143389659 to 143390416 757 + pseudogene Bacidic (leucine-rich) nuclear phosphoprotein 32 family, member B, pseudogene 1
Tssr40130 4 143389685 to 143389712 27 + TSS region transcription start site region 40130
Tssr40131 4 143390140 to 143390155 15 + TSS region transcription start site region 40131
Tssr44450 4 143390175 to 143390198 23 - TSS region transcription start site region 44450
Tssr44451 4 143390353 to 143390387 34 - TSS region transcription start site region 44451
Cpgi15261 4 143394262 to 143394829 567 CpG island CpG island 15261
Tssr40132 4 143394410 to 143394416 6 + TSS region transcription start site region 40132
Pramel1 4 143394428 to 143400160 5732 + protein coding gene preferentially expressed antigen in melanoma-like 1
Gm13045 4 143402344 to 143403413 1069 + pseudogene predicted gene 13045
Cpgi15262 4 143412383 to 143412896 513 CpG island CpG island 15262
Pramef8 4 143412426 to 143421091 8665 + protein coding gene PRAME family member 8
Tssr40133 4 143412920 to 143412983 63 + TSS region transcription start site region 40133
Tssr40134 4 143413002 to 143413014 12 + TSS region transcription start site region 40134
Tssr40135 4 143413764 to 143413770 6 + TSS region transcription start site region 40135
D4Pot1 4 143428388 to 143428684 296 DNA segment DNA segment, Chr 4, Poetter 1
Oog4 4 143437164 to 143450308 13144 - protein coding gene oogenesin 4
Tssr1366 4 143450324 to 143450326 2 - TSS region transcription start site region 1366
Tssr44452 4 143457998 to 143458000 2 - TSS region transcription start site region 44452
Gm13042 4 143458378 to 143460538 2160 - pseudogene predicted gene 13042
Gm13046 4 143464274 to 143464774 500 - pseudogene predicted gene 13046
Gm13041 4 143499435 to 143502095 2660 + pseudogene predicted gene 13041
Gm13043 4 143511343 to 143517831 6488 + protein coding gene predicted gene 13043
Gm13040 4 143535954 to 143542471 6517 + protein coding gene predicted gene 13040
Gm13057 4 143551709 to 143558234 6525 + protein coding gene predicted gene 13057
BC080695 4 143567467 to 143573798 6331 + protein coding gene cDNA sequence BC080695
Gm13058 4 143595062 to 143597611 2549 - pseudogene predicted gene 13058
Gm13080 4 143611658 to 143612077 419 - pseudogene predicted gene 13080
Tssr1367 4 143612105 to 143612136 31 - TSS region transcription start site region 1367
Gm13083 4 143615003 to 143618595 3592 + protein coding gene predicted gene 13083
Gm13088 4 143653760 to 143657246 3486 - protein coding gene predicted gene 13088
Gm13085 4 143663143 to 143663787 644 - pseudogene predicted gene 13085
Gm13082 4 143671124 to 143671684 560 + pseudogene predicted gene 13082
Gm46861 4 143681880 to 143685298 3418 + pseudogene predicted gene, 46861
D4Mit353 4 143689173 to 143689290 117 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 353
Gm13089 4 143696500 to 143702711 6211 - protein coding gene predicted gene 13089
Tssr40136 4 143719449 to 143719452 3 + TSS region transcription start site region 40136
Gm13078 4 143719455 to 143729158 9703 + protein coding gene predicted gene 13078
Gm13087 4 143735298 to 143735553 255 - pseudogene predicted gene 13087
Gm13081 4 143745787 to 143751385 5598 + pseudogene predicted gene 13081
Gm13023 4 143789352 to 143795575 6223 + protein coding gene predicted gene 13023
Gm13084 4 143809245 to 143816093 6848 - protein coding gene predicted gene 13084
Gm13103 4 143846497 to 143853637 7140 + protein coding gene predicted gene 13103
Pramef6 4 143894237 to 143900380 6143 - protein coding gene PRAME family member 6
Gm13100 4 143913857 to 143916442 2585 + pseudogene predicted gene 13100
Gm13106 4 143928534 to 143930736 2202 - pseudogene predicted gene 13106
Pramef25 4 143948580 to 143951016 2436 - protein coding gene PRAME family member 25
Gm13101 4 143964518 to 143966950 2432 - protein coding gene predicted gene 13101
Pramef17 4 143991127 to 143994369 3242 - protein coding gene PRAME family member 17
Gm13108 4 144033713 to 144035583 1870 + pseudogene predicted gene 13108
Gm13104 4 144041033 to 144042478 1445 - pseudogene predicted gene 13104
Pramel4 4 144059126 to 144069324 10198 + protein coding gene preferentially expressed antigen in melanoma like 4
Gm42367 4 144087362 to 144090870 3508 + protein coding gene predicted gene, 42367
Gm13102 4 144106474 to 144110101 3627 + protein coding gene predicted gene 13102
Oog3 4 144157556 to 144162651 5095 - protein coding gene oogenesin 3
Tssr44453 4 144162646 to 144162651 5 - TSS region transcription start site region 44453
Oog2 4 144190719 to 144196934 6215 + protein coding gene oogenesin 2
C87977 4 144206762 to 144213017 6255 - protein coding gene expressed sequence C87977
Gm13123 4 144247777 to 144248268 491 + pseudogene predicted gene 13123
Gm21012 4 144255727 to 144257581 1854 - pseudogene predicted gene, 21012
Pramel5 4 144270633 to 144280466 9833 - protein coding gene preferentially expressed antigen in melanoma like 5
Gm13120 4 144296692 to 144298137 1445 + pseudogene predicted gene 13120
Gm13130 4 144302992 to 144304859 1867 - pseudogene predicted gene 13130
Gm13128 4 144330249 to 144333465 3216 + protein coding gene predicted gene 13128
Gm13122 4 144345597 to 144346049 452 - pseudogene predicted gene 13122
Gm13119 4 144357964 to 144364419 6455 + protein coding gene predicted gene 13119
Pramef20 4 144372760 to 144377933 5173 - protein coding gene PRAME family member 20
Pramef12 4 144391674 to 144408464 16790 - protein coding gene PRAME family member 12
Tssr44454 4 144403621 to 144403640 19 - TSS region transcription start site region 44454
Tssr40137 4 144403745 to 144403750 5 + TSS region transcription start site region 40137
Pramef12os 4 144404868 to 144406301 1433 + antisense lncRNA gene PRAME family member 12, opposite strand
Tssr44455 4 144408397 to 144408440 43 - TSS region transcription start site region 44455
1700012P22Rik 4 144418189 to 144438772 20583 - protein coding gene RIKEN cDNA 1700012P22 gene
D4Mit259 4 144435695 to 144435838 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 259
Tssr44456 4 144438714 to 144438717 3 - TSS region transcription start site region 44456
Tssr44457 4 144438762 to 144438763 1 - TSS region transcription start site region 44457
Tssr44458 4 144438766 to 144438807 41 - TSS region transcription start site region 44458
D4Mit160 4 144450107 to 144450302 195 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 160
Gm9944 4 144453009 to 144453317 308 - protein coding gene predicted gene 9944
Aadacl3 4 144453771 to 144463756 9985 - protein coding gene arylacetamide deacetylase like 3
Tssr44459 4 144463776 to 144463788 12 - TSS region transcription start site region 44459
Gm13118 4 144498403 to 144498948 545 - pseudogene predicted gene 13118
Tssr40138 4 144519814 to 144519835 21 + TSS region transcription start site region 40138
9430007A20Rik 4 144519822 to 144529353 9531 + protein coding gene RIKEN cDNA 9430007A20 gene
Tssr40139 4 144520223 to 144520233 10 + TSS region transcription start site region 40139
Tssr40140 4 144522229 to 144522247 18 + TSS region transcription start site region 40140
Tssr40141 4 144523630 to 144523654 24 + TSS region transcription start site region 40141
Gm13121 4 144526414 to 144527042 628 - pseudogene predicted gene 13121
Tssr40142 4 144529225 to 144529232 7 + TSS region transcription start site region 40142
Tssr40143 4 144529261 to 144529268 7 + TSS region transcription start site region 40143
Tssr40144 4 144529408 to 144529423 15 + TSS region transcription start site region 40144
Tssr40145 4 144529515 to 144529521 6 + TSS region transcription start site region 40145
Tssr40146 4 144529537 to 144529563 26 + TSS region transcription start site region 40146