Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:142001076-143311078

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gasa1 4 124161300 to 142711450 18550150 QTL gastritis type A susceptibility locus 1
Tlsr2 4 124371164 to 142504390 18133226 QTL thymic lymphoma suppressor region 2
Cinda3 4 137890537 to 142562902 4672365 QTL cytokine induced activation 3
Fhad1 4 141890438 to 142015082 124644 - protein coding gene forkhead-associated (FHA) phosphopeptide binding domain 1
D4Mit252 4 142005828 to 142005934 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 252
Cpgi15250 4 142014751 to 142015379 628 CpG island CpG island 15250
Tssr44413 4 142015056 to 142015069 13 - TSS region transcription start site region 44413
Tssr44414 4 142015076 to 142015114 38 - TSS region transcription start site region 44414
4930455G09Rik 4 142017898 to 142028995 11097 + antisense lncRNA gene RIKEN cDNA 4930455G09 gene
Tssr40121 4 142017979 to 142017990 11 + TSS region transcription start site region 40121
Tssr40122 4 142018007 to 142018034 27 + TSS region transcription start site region 40122
Tmem51 4 142030992 to 142084304 53312 - protein coding gene transmembrane protein 51
Cpgi15251 4 142031361 to 142032121 760 CpG island CpG island 15251
Gm13053 4 142042912 to 142048578 5666 - sense intronic lncRNA gene predicted gene 13053
Tssr44415 4 142048458 to 142048468 10 - TSS region transcription start site region 44415
Tssr44416 4 142048531 to 142048540 9 - TSS region transcription start site region 44416
Tssr44417 4 142048569 to 142048584 15 - TSS region transcription start site region 44417
Tssr44418 4 142049005 to 142049012 7 - TSS region transcription start site region 44418
D4Mit128 4 142058983 to 142059132 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 128
D4Mit311 4 142062391 to 142062494 103 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 311
Tssr40123 4 142078278 to 142078290 12 + TSS region transcription start site region 40123
Cpgi15252 4 142083758 to 142084810 1052 CpG island CpG island 15252
Tssr44419 4 142084197 to 142084219 22 - TSS region transcription start site region 44419
Tssr44420 4 142084221 to 142084262 41 - TSS region transcription start site region 44420
Tmem51os1 4 142084298 to 142088101 3803 + antisense lncRNA gene Tmem51 opposite strand 1
Tssr44421 4 142084527 to 142084563 36 - TSS region transcription start site region 44421
Tssr44422 4 142084665 to 142084683 18 - TSS region transcription start site region 44422
Tssr40124 4 142089141 to 142089153 12 + TSS region transcription start site region 40124
Kazn 4 142102390 to 142239401 137011 - protein coding gene kazrin, periplakin interacting protein
Gm35581 4 142126678 to 142128190 1512 + lncRNA gene predicted gene, 35581
Tssr40125 4 142164616 to 142164656 40 + TSS region transcription start site region 40125
Tssr44423 4 142170998 to 142171038 40 - TSS region transcription start site region 44423
Gm13062 4 142180602 to 142184139 3537 + antisense lncRNA gene predicted gene 13062
Tssr44424 4 142192952 to 142192956 4 - TSS region transcription start site region 44424
Tssr40126 4 142238230 to 142238241 11 + TSS region transcription start site region 40126
Cpgi15253 4 142238336 to 142239736 1400 CpG island CpG island 15253
Gm35531 4 142239350 to 142242570 3220 + lncRNA gene predicted gene, 35531
Tssr44425 4 142239356 to 142239418 62 - TSS region transcription start site region 44425
Tssr44426 4 142239440 to 142239451 11 - TSS region transcription start site region 44426
1700085G17Rik 4 142255660 to 142256075 415 unclassified gene RIKEN cDNA 1700085G17 gene
Tssr40127 4 142307708 to 142307742 34 + TSS region transcription start site region 40127
Gm13052 4 142307765 to 142346475 38710 - lincRNA gene predicted gene 13052
Gm46875 4 142348717 to 142361007 12290 + lncRNA gene predicted gene, 46875
Gm42339 4 142407124 to 142414307 7183 - lncRNA gene predicted gene, 42339
C030029H13Rik 4 142421677 to 142422952 1275 unclassified gene Riken cDNA C030029H13 gene
Tssr44427 4 142422175 to 142422177 2 - TSS region transcription start site region 44427
Tssr44428 4 142453532 to 142453536 4 - TSS region transcription start site region 44428
Tssr44429 4 142460398 to 142460412 14 - TSS region transcription start site region 44429
Gm35752 4 142495588 to 142499568 3980 + lncRNA gene predicted gene, 35752
Cdcs9 4 142504302 to 142504390 88 QTL cytokine deficiency colitis susceptibility 9
Tpnr1 4 142504302 to 142504390 88 QTL thermal pain response 1
D4Mit13 4 142504302 to 142504390 88 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 13
Heal22 4 142504302 to 142504390 88 QTL wound healing/regeneration 22
Mts1 4 142562755 to 142562902 147 QTL mammary tumor susceptibility 1
D4Mit126 4 142562755 to 142562902 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 126
6330411D24Rik 4 142598441 to 143074839 476398 - unclassified non-coding RNA gene RIKEN cDNA 6330411D24 gene
Gm42342 4 142631738 to 142635423 3685 + lncRNA gene predicted gene, 42342
Gm42340 4 142641817 to 142663123 21306 + lncRNA gene predicted gene, 42340
Gm42341 4 142643385 to 142647566 4181 - lncRNA gene predicted gene, 42341
Tssr44430 4 142656076 to 142656078 2 - TSS region transcription start site region 44430
D4Mit343 4 142711337 to 142711450 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 343
D4Mit343.2 4 142711474 to 142711589 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 343.2
D4Mit354 4 142770527 to 142770636 109 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 354
Gm37624 4 142790808 to 142791026 218 + unclassified gene predicted gene, 37624
Cpgi15254 4 142854050 to 142854206 156 CpG island CpG island 15254
Cpgi15255 4 142909612 to 142909921 309 CpG island CpG island 15255
Tssr1365 4 142996196 to 142996200 4 + TSS region transcription start site region 1365
Cpgi15256 4 143074295 to 143074509 214 CpG island CpG island 15256
5830426C09Rik 4 143102688 to 143106330 3642 unclassified gene RIKEN cDNA 5830426C09 gene
Prdm2 4 143107391 to 143212736 105345 - protein coding gene PR domain containing 2, with ZNF domain
Tssr44431 4 143133819 to 143133842 23 - TSS region transcription start site region 44431
Mir7021 4 143136100 to 143136162 62 - miRNA gene microRNA 7021
Tssr44432 4 143136640 to 143136644 4 - TSS region transcription start site region 44432
Gm13038 4 143152572 to 143153030 458 + pseudogene predicted gene 13038
Tssr44433 4 143161329 to 143161337 8 - TSS region transcription start site region 44433
Cpgi15257 4 143161563 to 143162689 1126 CpG island CpG island 15257
Tssr44434 4 143162097 to 143162134 37 - TSS region transcription start site region 44434
Tssr44435 4 143162140 to 143162172 32 - TSS region transcription start site region 44435
Gm13039 4 143166603 to 143167396 793 + pseudogene predicted gene 13039
Gm22039 4 143204065 to 143204196 131 + snoRNA gene predicted gene, 22039
Cpgi15258 4 143211808 to 143213337 1529 CpG island CpG island 15258
Gm6687 4 143211901 to 143215001 3100 protein coding gene predicted gene 6687
Tssr44436 4 143212667 to 143212678 11 - TSS region transcription start site region 44436
Tssr44437 4 143212691 to 143212728 37 - TSS region transcription start site region 44437
Gm13050 4 143242027 to 143243367 1340 - pseudogene predicted gene 13050
Tssr44438 4 143243270 to 143243291 21 - TSS region transcription start site region 44438
Tssr44439 4 143245887 to 143245890 3 - TSS region transcription start site region 44439
Pdpn 4 143267431 to 143299564 32133 - protein coding gene podoplanin
Tssr44440 4 143267902 to 143267906 4 - TSS region transcription start site region 44440
Tssr44441 4 143268071 to 143268103 32 - TSS region transcription start site region 44441
Tssr44442 4 143268299 to 143268307 8 - TSS region transcription start site region 44442
Tssr44443 4 143274029 to 143274034 5 - TSS region transcription start site region 44443
Tssr44444 4 143276096 to 143276106 10 - TSS region transcription start site region 44444
Tssr44445 4 143276149 to 143276166 17 - TSS region transcription start site region 44445
Tssr44446 4 143278898 to 143278915 17 - TSS region transcription start site region 44446
Tssr44447 4 143299275 to 143299290 15 - TSS region transcription start site region 44447
Tssr44448 4 143299465 to 143299482 17 - TSS region transcription start site region 44448
Tssr44449 4 143299498 to 143299511 13 - TSS region transcription start site region 44449