Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141474063-141854170

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Shali2 4 124161300 to 141845481 17684181 QTL survival time to hyperoxic acute lung injury 2
Spen 4 141467890 to 141538597 70707 - protein coding gene spen family transcription repressor
Cpgi15231 4 141477458 to 141477886 428 CpG island CpG island 15231
Tssr1361 4 141477517 to 141477524 7 - TSS region transcription start site region 1361
Cpgi15232 4 141478332 to 141479141 809 CpG island CpG island 15232
Gm4123 4 141535513 to 141537422 1909 + unclassified gene predicted gene 4123
Cpgi15233 4 141536165 to 141537207 1042 CpG island CpG island 15233
Cpgi15234 4 141537419 to 141539085 1666 CpG island CpG island 15234
Tssr44321 4 141538434 to 141538525 91 - TSS region transcription start site region 44321
Tssr44322 4 141538562 to 141538626 64 - TSS region transcription start site region 44322
B830004H01Rik 4 141539208 to 141543604 4396 unclassified non-coding RNA gene RIKEN cDNA B830004H01 gene
Cpgi15235 4 141545097 to 141547224 2127 CpG island CpG island 15235
Tssr40080 4 141545213 to 141545230 17 + TSS region transcription start site region 40080
Tssr44323 4 141545864 to 141545897 33 - TSS region transcription start site region 44323
Tssr40081 4 141546141 to 141546202 61 + TSS region transcription start site region 40081
B330016D10Rik 4 141546189 to 141547892 1703 + unclassified non-coding RNA gene RIKEN cDNA B330016D10 gene
Tssr1362 4 141546765 to 141546799 34 + TSS region transcription start site region 1362
Tssr40082 4 141546800 to 141546829 29 + TSS region transcription start site region 40082
Tssr44324 4 141547039 to 141547057 18 - TSS region transcription start site region 44324
Tssr44325 4 141559419 to 141559427 8 - TSS region transcription start site region 44325
Cpgi15236 4 141559532 to 141560025 493 CpG island CpG island 15236
Tssr44326 4 141566337 to 141566344 7 - TSS region transcription start site region 44326
Tssr44327 4 141566353 to 141566381 28 - TSS region transcription start site region 44327
Tssr44328 4 141566384 to 141566393 9 - TSS region transcription start site region 44328
Tssr40083 4 141566483 to 141566500 17 + TSS region transcription start site region 40083
Tssr44329 4 141571482 to 141571489 7 - TSS region transcription start site region 44329
Tssr44330 4 141571517 to 141571544 27 - TSS region transcription start site region 44330
Tssr44331 4 141571611 to 141571634 23 - TSS region transcription start site region 44331
Tssr40084 4 141572261 to 141572272 11 + TSS region transcription start site region 40084
Tssr40085 4 141573265 to 141573288 23 + TSS region transcription start site region 40085
Tssr40086 4 141573481 to 141573526 45 + TSS region transcription start site region 40086
Fblim1 4 141576062 to 141606052 29990 - protein coding gene filamin binding LIM protein 1
Tssr44332 4 141576805 to 141576834 29 - TSS region transcription start site region 44332
Tssr44333 4 141581389 to 141581395 6 - TSS region transcription start site region 44333
Tssr44334 4 141586803 to 141586806 3 - TSS region transcription start site region 44334
Tssr44335 4 141595935 to 141595961 26 - TSS region transcription start site region 44335
D4Mit284 4 141596121 to 141596243 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 284
Tssr44336 4 141598209 to 141598229 20 - TSS region transcription start site region 44336
Tssr44337 4 141598230 to 141598245 15 - TSS region transcription start site region 44337
Cpgi15237 4 141599322 to 141600201 879 CpG island CpG island 15237
Tssr44338 4 141599868 to 141599906 38 - TSS region transcription start site region 44338
Tssr44339 4 141599942 to 141599953 11 - TSS region transcription start site region 44339
Tssr44340 4 141600872 to 141600887 15 - TSS region transcription start site region 44340
Tssr44341 4 141601612 to 141601663 51 - TSS region transcription start site region 44341
Tssr44342 4 141601668 to 141601675 7 - TSS region transcription start site region 44342
Tssr44343 4 141601676 to 141601738 62 - TSS region transcription start site region 44343
Tssr44344 4 141605976 to 141606008 32 - TSS region transcription start site region 44344
Tssr44345 4 141606011 to 141606058 47 - TSS region transcription start site region 44345
Tssr44346 4 141606103 to 141606112 9 - TSS region transcription start site region 44346
Tmem82 4 141614229 to 141618633 4404 - protein coding gene transmembrane protein 82
Tssr40087 4 141614313 to 141614315 2 + TSS region transcription start site region 40087
Tssr40088 4 141614340 to 141614389 49 + TSS region transcription start site region 40088
AI507597 4 141614370 to 141615604 1234 + antisense lncRNA gene expressed sequence AI507597
Tssr40089 4 141614584 to 141614593 9 + TSS region transcription start site region 40089
Cpgi15238 4 141617310 to 141618032 722 CpG island CpG island 15238
Tssr44347 4 141617996 to 141618056 60 - TSS region transcription start site region 44347
Slc25a34 4 141618824 to 141623821 4997 - protein coding gene solute carrier family 25, member 34
Tssr1363 4 141623138 to 141623143 5 - TSS region transcription start site region 1363
Tssr40090 4 141623276 to 141623285 9 + TSS region transcription start site region 40090
Tssr44348 4 141623799 to 141623840 41 - TSS region transcription start site region 44348
Plekhm2 4 141625732 to 141664115 38383 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 2
Cpgi15239 4 141628239 to 141628585 346 CpG island CpG island 15239
Tssr44349 4 141642130 to 141642147 17 - TSS region transcription start site region 44349
Tssr44350 4 141642168 to 141642201 33 - TSS region transcription start site region 44350
Tssr44351 4 141642823 to 141642834 11 - TSS region transcription start site region 44351
Tssr44352 4 141644964 to 141644969 5 - TSS region transcription start site region 44352
4930451G21Rik 4 141652123 to 141654919 2796 unclassified gene RIKEN cDNA 4930451G21 gene
Tssr44353 4 141652372 to 141652413 41 - TSS region transcription start site region 44353
Tssr44354 4 141652455 to 141652479 24 - TSS region transcription start site region 44354
Cpgi15240 4 141663184 to 141664580 1396 CpG island CpG island 15240
Tssr44355 4 141663999 to 141664021 22 - TSS region transcription start site region 44355
Tssr44356 4 141664063 to 141664170 107 - TSS region transcription start site region 44356
Tssr40091 4 141664187 to 141664231 44 + TSS region transcription start site region 40091
Tssr40092 4 141664241 to 141664249 8 + TSS region transcription start site region 40092
Tssr44357 4 141679549 to 141679551 2 - TSS region transcription start site region 44357
Ddi2 4 141683563 to 141723419 39856 - protein coding gene DNA-damage inducible protein 2
Rsc1a1 4 141683851 to 141685599 1748 - protein coding gene regulatory solute carrier protein, family 1, member 1
Tssr44358 4 141696043 to 141696047 4 - TSS region transcription start site region 44358
Tssr44359 4 141708402 to 141708414 12 - TSS region transcription start site region 44359
Tssr40093 4 141714044 to 141714049 5 + TSS region transcription start site region 40093
Cpgi15241 4 141722732 to 141723927 1195 CpG island CpG island 15241
Tssr44360 4 141723297 to 141723308 11 - TSS region transcription start site region 44360
Tssr44361 4 141723401 to 141723436 35 - TSS region transcription start site region 44361
Tssr1364 4 141723439 to 141723454 15 - TSS region transcription start site region 1364
Tssr44362 4 141723458 to 141723466 8 - TSS region transcription start site region 44362
Gm34863 4 141729503 to 141743817 14314 + lncRNA gene predicted gene, 34863
Cpgi15242 4 141734916 to 141735267 351 CpG island CpG island 15242
Agmat 4 141746675 to 141759263 12588 + protein coding gene agmatine ureohydrolase (agmatinase)
Tssr40094 4 141746730 to 141746759 29 + TSS region transcription start site region 40094
Tssr40095 4 141746769 to 141746787 18 + TSS region transcription start site region 40095
Tssr40096 4 141746792 to 141746814 22 + TSS region transcription start site region 40096
Cpgi15243 4 141746870 to 141747160 290 CpG island CpG island 15243
Tssr40097 4 141750293 to 141750294 1 + TSS region transcription start site region 40097
Tssr40098 4 141757347 to 141757395 48 + TSS region transcription start site region 40098
Dnajc16 4 141761998 to 141790644 28646 - protein coding gene DnaJ heat shock protein family (Hsp40) member C16
Cpgi15244 4 141790063 to 141791116 1053 CpG island CpG island 15244
Tssr44363 4 141790629 to 141790698 69 - TSS region transcription start site region 44363
Tssr44364 4 141790899 to 141790941 42 - TSS region transcription start site region 44364
Cpgi15245 4 141793076 to 141794180 1104 CpG island CpG island 15245
Tssr44365 4 141793183 to 141793188 5 - TSS region transcription start site region 44365
Casp9 4 141793612 to 141815976 22364 + protein coding gene caspase 9
Tssr40099 4 141793705 to 141793735 30 + TSS region transcription start site region 40099
Tssr40100 4 141793789 to 141793809 20 + TSS region transcription start site region 40100
Tssr40101 4 141793818 to 141793848 30 + TSS region transcription start site region 40101
Tssr40102 4 141814957 to 141814971 14 + TSS region transcription start site region 40102
Cela2a 4 141814963 to 141826003 11040 - protein coding gene chymotrypsin-like elastase family, member 2A
Tssr40103 4 141814982 to 141814987 5 + TSS region transcription start site region 40103
Tssr44366 4 141814993 to 141815063 70 - TSS region transcription start site region 44366
Tssr40104 4 141814995 to 141815033 38 + TSS region transcription start site region 40104
Tssr44367 4 141815789 to 141815791 2 - TSS region transcription start site region 44367
Tssr44368 4 141816734 to 141816738 4 - TSS region transcription start site region 44368
Tssr40105 4 141817860 to 141817899 39 + TSS region transcription start site region 40105
Tssr44369 4 141817885 to 141817897 12 - TSS region transcription start site region 44369
Tssr44370 4 141817899 to 141817937 38 - TSS region transcription start site region 44370
Tssr40106 4 141817903 to 141817930 27 + TSS region transcription start site region 40106
Tssr44371 4 141817947 to 141817968 21 - TSS region transcription start site region 44371
Tssr40107 4 141817974 to 141817982 8 + TSS region transcription start site region 40107
Tssr44372 4 141817975 to 141817999 24 - TSS region transcription start site region 44372
Tssr44373 4 141818280 to 141818286 6 - TSS region transcription start site region 44373
Cpgi15246 4 141818902 to 141819077 175 CpG island CpG island 15246
Tssr44374 4 141819019 to 141819132 113 - TSS region transcription start site region 44374
Tssr40108 4 141819024 to 141819044 20 + TSS region transcription start site region 40108
Tssr40109 4 141819050 to 141819079 29 + TSS region transcription start site region 40109
Tssr40110 4 141819085 to 141819102 17 + TSS region transcription start site region 40110
Tssr44375 4 141819327 to 141819365 38 - TSS region transcription start site region 44375
Tssr44376 4 141819366 to 141819383 17 - TSS region transcription start site region 44376
D4Mit32 4 141819851 to 141819999 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 32
Tssr44377 4 141819984 to 141819992 8 - TSS region transcription start site region 44377
Tssr44378 4 141820103 to 141820113 10 - TSS region transcription start site region 44378
Tssr40111 4 141821325 to 141821350 25 + TSS region transcription start site region 40111
Tssr44379 4 141821352 to 141821362 10 - TSS region transcription start site region 44379
Tssr40112 4 141821353 to 141821366 13 + TSS region transcription start site region 40112
Tssr44380 4 141821364 to 141821466 102 - TSS region transcription start site region 44380
Tssr40113 4 141821382 to 141821420 38 + TSS region transcription start site region 40113
Tssr40114 4 141821704 to 141821723 19 + TSS region transcription start site region 40114
Tssr44381 4 141821720 to 141821730 10 - TSS region transcription start site region 44381
Tssr40115 4 141821738 to 141821751 13 + TSS region transcription start site region 40115
Tssr44382 4 141821739 to 141821786 47 - TSS region transcription start site region 44382
Tssr40116 4 141821778 to 141821804 26 + TSS region transcription start site region 40116
Tssr44383 4 141821790 to 141821840 50 - TSS region transcription start site region 44383
Tssr44384 4 141822257 to 141822262 5 - TSS region transcription start site region 44384
Tssr44385 4 141822263 to 141822266 3 - TSS region transcription start site region 44385
Tssr44386 4 141822273 to 141822334 61 - TSS region transcription start site region 44386
Tssr44387 4 141825549 to 141825576 27 - TSS region transcription start site region 44387
Tssr44388 4 141825582 to 141825601 19 - TSS region transcription start site region 44388
Tssr44389 4 141825605 to 141825634 29 - TSS region transcription start site region 44389
Tssr44390 4 141825997 to 141826012 15 - TSS region transcription start site region 44390
Lymph3 4 141826172 to 141826172 0 QTL lymphocyte differential 3
Ctrc 4 141838239 to 141846359 8120 - protein coding gene chymotrypsin C (caldecrin)
Tssr40117 4 141844300 to 141844310 10 + TSS region transcription start site region 40117
Ctrcos 4 141844321 to 141846990 2669 + antisense lncRNA gene chymotrypsin C (caldecrin), opposite strand
Tssr44391 4 141844657 to 141844685 28 - TSS region transcription start site region 44391
D4Mit65 4 141845361 to 141845481 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 65
Tssr44392 4 141846277 to 141846293 16 - TSS region transcription start site region 44392
Tssr44393 4 141846361 to 141846374 13 - TSS region transcription start site region 44393
Gm35034 4 141848343 to 141858453 10110 + lncRNA gene predicted gene, 35034