Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:139364911-139604932

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emc1 4 139352587 to 139378730 26143 + protein coding gene ER membrane protein complex subunit 1
Tssr39944 4 139375818 to 139375836 18 + TSS region transcription start site region 39944
2700016F22Rik 4 139376549 to 139380379 3830 - lincRNA gene RIKEN cDNA 2700016F22 gene
Tssr39945 4 139376706 to 139376712 6 + TSS region transcription start site region 39945
Cpgi15168 4 139380162 to 139381141 979 CpG island CpG island 15168
Tssr44230 4 139380374 to 139380404 30 - TSS region transcription start site region 44230
Tssr39946 4 139380601 to 139380656 55 + TSS region transcription start site region 39946
Tssr39947 4 139380658 to 139380684 26 + TSS region transcription start site region 39947
Ubr4 4 139380659 to 139489533 108874 + protein coding gene ubiquitin protein ligase E3 component n-recognin 4
Tssr39948 4 139390831 to 139390850 19 + TSS region transcription start site region 39948
Tssr39949 4 139399738 to 139399753 15 + TSS region transcription start site region 39949
Cpgi15169 4 139430009 to 139430288 279 CpG island CpG island 15169
n-TVaac1 4 139430506 to 139430577 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon AAC)
Tssr39950 4 139431068 to 139431075 7 + TSS region transcription start site region 39950
Tssr39951 4 139431086 to 139431107 21 + TSS region transcription start site region 39951
Tssr39952 4 139431118 to 139431129 11 + TSS region transcription start site region 39952
Tssr39953 4 139431130 to 139431141 11 + TSS region transcription start site region 39953
Tssr1357 4 139460261 to 139460279 18 + TSS region transcription start site region 1357
Tssr39954 4 139484911 to 139484932 21 + TSS region transcription start site region 39954
Iffo2 4 139530548 to 139620382 89834 + protein coding gene intermediate filament family orphan 2
Cpgi15170 4 139556023 to 139556265 242 CpG island CpG island 15170
Cpgi15171 4 139573686 to 139575985 2299 CpG island CpG island 15171
Tssr39955 4 139574644 to 139574690 46 + TSS region transcription start site region 39955
Tssr39956 4 139574697 to 139574725 28 + TSS region transcription start site region 39956
Gm25571 4 139588876 to 139588977 101 - miRNA gene predicted gene, 25571
Tssr39957 4 139592985 to 139592990 5 + TSS region transcription start site region 39957
Tssr44231 4 139599121 to 139599145 24 - TSS region transcription start site region 44231
Gm21969 4 139603186 to 139662691 59505 + protein coding gene predicted gene 21969