Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133730228-134020239

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr43803 4 133751618 to 133751629 11 - TSS region transcription start site region 43803
Tssr39502 4 133751837 to 133751848 11 + TSS region transcription start site region 39502
Cpgi15015 4 133752049 to 133755024 2975 CpG island CpG island 15015
Tssr43804 4 133752704 to 133752756 52 - TSS region transcription start site region 43804
Tssr43805 4 133753030 to 133753044 14 - TSS region transcription start site region 43805
Tssr43806 4 133753616 to 133753666 50 - TSS region transcription start site region 43806
Tssr43807 4 133753860 to 133753869 9 - TSS region transcription start site region 43807
Tssr43808 4 133753915 to 133753926 11 - TSS region transcription start site region 43808
Tssr43809 4 133753961 to 133754019 58 - TSS region transcription start site region 43809
Tssr43810 4 133754222 to 133754237 15 - TSS region transcription start site region 43810
Tssr43811 4 133754260 to 133754297 37 - TSS region transcription start site region 43811
Tssr43812 4 133754299 to 133754316 17 - TSS region transcription start site region 43812
Tssr43813 4 133754322 to 133754378 56 - TSS region transcription start site region 43813
Tssr43814 4 133754397 to 133754408 11 - TSS region transcription start site region 43814
Cpgi15016 4 133756499 to 133757883 1384 CpG island CpG island 15016
Tssr43815 4 133756520 to 133756539 19 - TSS region transcription start site region 43815
Tssr43816 4 133756780 to 133756794 14 - TSS region transcription start site region 43816
Tssr43817 4 133757400 to 133757435 35 - TSS region transcription start site region 43817
Gm30019 4 133768128 to 133775447 7319 - lncRNA gene predicted gene, 30019
Gm29942 4 133774969 to 133781279 6310 + lncRNA gene predicted gene, 29942
D4Mit71 4 133785915 to 133786031 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 71
D4Dcr28 4 133785938 to 133786036 98 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 28
Gm34296 4 133792037 to 133821546 29509 - lncRNA gene predicted gene, 34296
Gm25270 4 133797582 to 133797719 137 - snRNA gene predicted gene, 25270
Cpgi15017 4 133813135 to 133814792 1657 CpG island CpG island 15017
Tssr43818 4 133813294 to 133813305 11 - TSS region transcription start site region 43818
Tssr39503 4 133813402 to 133813405 3 + TSS region transcription start site region 39503
Tssr39504 4 133813534 to 133813561 27 + TSS region transcription start site region 39504
Tssr43819 4 133814106 to 133814134 28 - TSS region transcription start site region 43819
Tssr43820 4 133815805 to 133815816 11 - TSS region transcription start site region 43820
Tssr39505 4 133816248 to 133816254 6 + TSS region transcription start site region 39505
Tssr39506 4 133816281 to 133816293 12 + TSS region transcription start site region 39506
Gm12974 4 133816420 to 133817614 1194 + lincRNA gene predicted gene 12974
Tssr39507 4 133816474 to 133816490 16 + TSS region transcription start site region 39507
Rps6ka1 4 133847290 to 133887797 40507 - protein coding gene ribosomal protein S6 kinase polypeptide 1
Tssr43821 4 133865316 to 133865337 21 - TSS region transcription start site region 43821
Gm12977 4 133871830 to 133876533 4703 + antisense lncRNA gene predicted gene 12977
Tssr43822 4 133872304 to 133872346 42 - TSS region transcription start site region 43822
Tssr43823 4 133872997 to 133873044 47 - TSS region transcription start site region 43823
Tssr43824 4 133873048 to 133873061 13 - TSS region transcription start site region 43824
Tssr43825 4 133874658 to 133874669 11 - TSS region transcription start site region 43825
Tssr43826 4 133874682 to 133874722 40 - TSS region transcription start site region 43826
Tssr43827 4 133875228 to 133875239 11 - TSS region transcription start site region 43827
Tssr43828 4 133875260 to 133875274 14 - TSS region transcription start site region 43828
Gm12985 4 133882945 to 133883127 182 - pseudogene predicted gene 12985
Gm22523 4 133883399 to 133883498 99 - snRNA gene predicted gene, 22523
Cpgi15018 4 133887040 to 133888452 1412 CpG island CpG island 15018
Tssr43829 4 133887744 to 133887762 18 - TSS region transcription start site region 43829
Tssr43830 4 133887765 to 133887804 39 - TSS region transcription start site region 43830
Tssr43831 4 133887823 to 133887824 1 - TSS region transcription start site region 43831
Tssr43832 4 133899469 to 133899493 24 - TSS region transcription start site region 43832
Cpgi15019 4 133910454 to 133911296 842 CpG island CpG island 15019
4930429E23Rik 4 133910553 to 133911443 890 unclassified gene RIKEN cDNA 4930429E23 gene
Tssr43833 4 133910663 to 133910674 11 - TSS region transcription start site region 43833
Tssr43834 4 133910690 to 133910712 22 - TSS region transcription start site region 43834
Tssr43835 4 133910730 to 133910735 5 - TSS region transcription start site region 43835
Tssr39508 4 133944019 to 133944027 8 + TSS region transcription start site region 39508
Hmgn2 4 133964739 to 133967991 3252 - protein coding gene high mobility group nucleosomal binding domain 2
Cpgi15020 4 133966892 to 133968970 2078 CpG island CpG island 15020
Tssr43836 4 133967194 to 133967227 33 - TSS region transcription start site region 43836
Tssr43837 4 133967235 to 133967284 49 - TSS region transcription start site region 43837
Tssr43838 4 133967296 to 133967308 12 - TSS region transcription start site region 43838
Tssr43839 4 133967924 to 133967951 27 - TSS region transcription start site region 43839
Tssr43840 4 133967953 to 133968005 52 - TSS region transcription start site region 43840
Tssr43841 4 133968114 to 133968126 12 - TSS region transcription start site region 43841
Tssr39509 4 133968149 to 133968153 4 + TSS region transcription start site region 39509
Tssr43842 4 133968611 to 133968621 10 - TSS region transcription start site region 43842
Dhdds 4 133969057 to 134000864 31807 - protein coding gene dehydrodolichyl diphosphate synthase
Tssr1329 4 133973774 to 133973778 4 + TSS region transcription start site region 1329
Tssr43843 4 133980564 to 133980578 14 - TSS region transcription start site region 43843
Tssr43844 4 133984830 to 133984833 3 - TSS region transcription start site region 43844
Cpgi15021 4 134000565 to 134001393 828 CpG island CpG island 15021
Tssr43845 4 134000830 to 134000850 20 - TSS region transcription start site region 43845
Tssr43846 4 134000857 to 134000904 47 - TSS region transcription start site region 43846
Lin28a 4 134003330 to 134018841 15511 - protein coding gene lin-28 homolog A (C. elegans)
Gm10299 4 134003362 to 134004884 1522 unclassified gene predicted gene 10299
Tssr43847 4 134004120 to 134004138 18 - TSS region transcription start site region 43847
Tssr43848 4 134004185 to 134004201 16 - TSS region transcription start site region 43848
Tssr43849 4 134004450 to 134004484 34 - TSS region transcription start site region 43849
Tssr43850 4 134004530 to 134004539 9 - TSS region transcription start site region 43850
Tssr43851 4 134004585 to 134004597 12 - TSS region transcription start site region 43851
Tssr43852 4 134012381 to 134012404 23 - TSS region transcription start site region 43852
Tssr43853 4 134012407 to 134012430 23 - TSS region transcription start site region 43853
Tssr1330 4 134012432 to 134012435 3 - TSS region transcription start site region 1330
Cpgi15022 4 134017692 to 134018891 1199 CpG island CpG island 15022
Gm13061 4 134018147 to 134019869 1722 + unclassified non-coding RNA gene predicted gene 13061
Tssr43854 4 134018747 to 134018754 7 - TSS region transcription start site region 43854
Tssr43855 4 134018785 to 134018792 7 - TSS region transcription start site region 43855
Tssr43856 4 134018798 to 134018823 25 - TSS region transcription start site region 43856
Tssr43857 4 134018829 to 134018836 7 - TSS region transcription start site region 43857
Tssr43858 4 134018849 to 134018862 13 - TSS region transcription start site region 43858
Tssr39510 4 134019439 to 134019450 11 + TSS region transcription start site region 39510