Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132112141-132312153

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Oprd1 4 132110726 to 132144486 33760 - protein coding gene opioid receptor, delta 1
Cpgi14950 4 132113324 to 132114138 814 CpG island CpG island 14950
n-TAcgc3 4 132125259 to 132125330 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon CGC)
Cpgi14951 4 132143817 to 132144860 1043 CpG island CpG island 14951
Tssr43637 4 132144519 to 132144531 12 - TSS region transcription start site region 43637
Gm13215 4 132148413 to 132148884 471 - pseudogene predicted gene 13215
Tssr43638 4 132148917 to 132148931 14 - TSS region transcription start site region 43638
D4Mit250a 4 132178806 to 132178934 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250a
D4Mit250b 4 132178806 to 132179023 217 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250b
Tssr43639 4 132183330 to 132183336 6 - TSS region transcription start site region 43639
Tssr43640 4 132184387 to 132184391 4 - TSS region transcription start site region 43640
Ythdf2 4 132184916 to 132212256 27340 - protein coding gene YTH N6-methyladenosine RNA binding protein 2
Tssr43641 4 132186582 to 132186602 20 - TSS region transcription start site region 43641
Tssr43642 4 132192278 to 132192281 3 - TSS region transcription start site region 43642
Tssr43643 4 132206439 to 132206443 4 - TSS region transcription start site region 43643
Cpgi14952 4 132210986 to 132212662 1676 CpG island CpG island 14952
Tssr43644 4 132211999 to 132212010 11 - TSS region transcription start site region 43644
Tssr43645 4 132212041 to 132212059 18 - TSS region transcription start site region 43645
Tssr43646 4 132212060 to 132212130 70 - TSS region transcription start site region 43646
Tssr43647 4 132212141 to 132212153 12 - TSS region transcription start site region 43647
Tssr43648 4 132212255 to 132212262 7 - TSS region transcription start site region 43648
Gm22033 4 132218439 to 132218528 89 - miRNA gene predicted gene, 22033
Rps15a-ps4 4 132219988 to 132220489 501 - pseudogene ribosomal protein S15A, pseudogene 4
Tssr43649 4 132220467 to 132220471 4 - TSS region transcription start site region 43649
Gmeb1 4 132221025 to 132261549 40524 - protein coding gene glucocorticoid modulatory element binding protein 1
Gm13252 4 132244946 to 132245266 320 - pseudogene predicted gene 13252
Tssr39362 4 132260504 to 132260517 13 + TSS region transcription start site region 39362
Tssr39363 4 132260521 to 132260538 17 + TSS region transcription start site region 39363
Cpgi14953 4 132260736 to 132261842 1106 CpG island CpG island 14953
Tssr43650 4 132261526 to 132261572 46 - TSS region transcription start site region 43650
Tssr43651 4 132261596 to 132261622 26 - TSS region transcription start site region 43651
Gm28874 4 132265708 to 132268841 3133 + lincRNA gene predicted gene 28874
Gm28872 4 132270056 to 132270213 157 + lincRNA gene predicted gene 28872
Rnu11 4 132270079 to 132270186 107 - snRNA gene U11 small nuclear RNA
Cpgi14954 4 132270094 to 132270537 443 CpG island CpG island 14954
Tssr43652 4 132270209 to 132270214 5 - TSS region transcription start site region 43652
Tssr43653 4 132273755 to 132273758 3 - TSS region transcription start site region 43653
Gt(pU21)115Imeg 4 132274095 to 132274281 186 unclassified gene gene trap 115, Institute of Molecular Embryology and Genetics
Cpgi14955 4 132274096 to 132274979 883 CpG island CpG island 14955
Tssr43654 4 132274277 to 132274327 50 - TSS region transcription start site region 43654
Taf12 4 132274355 to 132293329 18974 + protein coding gene TATA-box binding protein associated factor 12
Tssr39364 4 132274369 to 132274383 14 + TSS region transcription start site region 39364
Tssr39365 4 132274385 to 132274433 48 + TSS region transcription start site region 39365
Tssr39366 4 132274444 to 132274455 11 + TSS region transcription start site region 39366
Rab42 4 132302197 to 132303385 1188 - protein coding gene RAB42, member RAS oncogene family
Cpgi14956 4 132302928 to 132303395 467 CpG island CpG island 14956
Tssr43655 4 132303167 to 132303180 13 - TSS region transcription start site region 43655
Tssr43656 4 132303181 to 132303210 29 - TSS region transcription start site region 43656
Tssr43657 4 132303331 to 132303350 19 - TSS region transcription start site region 43657
Cpgi14957 4 132308544 to 132309105 561 CpG island CpG island 14957
Tssr39367 4 132308668 to 132308688 20 + TSS region transcription start site region 39367
Snhg12 4 132308678 to 132311024 2346 + lincRNA gene small nucleolar RNA host gene 12
Snora16a 4 132309465 to 132309600 135 + snoRNA gene small nucleolar RNA, H/ACA box 16A
Snora44 4 132309953 to 132310069 116 + snoRNA gene small nucleolar RNA, H/ACA box 44
Tssr39368 4 132310128 to 132310174 46 + TSS region transcription start site region 39368
Snora61 4 132310307 to 132310368 61 + snoRNA gene small nucleolar RNA, H/ACA box 61
Tssr39369 4 132310692 to 132310697 5 + TSS region transcription start site region 39369
Snord99 4 132310703 to 132310758 55 + snoRNA gene small nucleolar RNA, C/D box 99
Tssr39370 4 132311516 to 132311519 3 + TSS region transcription start site region 39370
Trnau1ap 4 132311763 to 132329538 17775 - protein coding gene tRNA selenocysteine 1 associated protein 1