Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129366661-129556689

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zbtb8a 4 129353632 to 129378028 24396 - protein coding gene zinc finger and BTB domain containing 8a
Tssr43495 4 129374285 to 129374327 42 - TSS region transcription start site region 43495
Tssr39144 4 129375328 to 129375346 18 + TSS region transcription start site region 39144
Tssr43496 4 129376012 to 129376026 14 - TSS region transcription start site region 43496
Cpgi14890 4 129376829 to 129378079 1250 CpG island CpG island 14890
Tssr43497 4 129377826 to 129377838 12 - TSS region transcription start site region 43497
Tssr43498 4 129377847 to 129377924 77 - TSS region transcription start site region 43498
Tssr43499 4 129377933 to 129377950 17 - TSS region transcription start site region 43499
Tssr43500 4 129378996 to 129379006 10 - TSS region transcription start site region 43500
Gm12980 4 129379844 to 129380179 335 + pseudogene predicted gene 12980
Tssr39145 4 129381415 to 129381438 23 + TSS region transcription start site region 39145
C330020E22Rik 4 129382546 to 129407475 24929 + lncRNA gene RIKEN cDNA C330020E22 gene
Tssr39146 4 129382685 to 129382706 21 + TSS region transcription start site region 39146
Tssr39147 4 129382721 to 129382767 46 + TSS region transcription start site region 39147
Cpgi14891 4 129406491 to 129406825 334 CpG island CpG island 14891
Zbtb8b 4 129425765 to 129440853 15088 - protein coding gene zinc finger and BTB domain containing 8b
Cpgi14892 4 129440541 to 129440871 330 CpG island CpG island 14892
Tssr43501 4 129440800 to 129440823 23 - TSS region transcription start site region 43501
Tssr43502 4 129446966 to 129446971 5 - TSS region transcription start site region 43502
Tssr39148 4 129458350 to 129458351 1 + TSS region transcription start site region 39148
Gm24621 4 129458351 to 129458490 139 + snRNA gene predicted gene, 24621
4921504P20Rik 4 129460171 to 129461523 1352 unclassified gene RIKEN cDNA 4921504P20 gene
Cpgi14893 4 129461336 to 129462066 730 CpG island CpG island 14893
Tssr39149 4 129461661 to 129461689 28 + TSS region transcription start site region 39149
Bsdc1 4 129461679 to 129488498 26819 + protein coding gene BSD domain containing 1
Tssr39150 4 129464538 to 129464550 12 + TSS region transcription start site region 39150
Tssr39151 4 129474068 to 129474084 16 + TSS region transcription start site region 39151
Tssr39152 4 129487087 to 129487098 11 + TSS region transcription start site region 39152
Tssr39153 4 129487158 to 129487172 14 + TSS region transcription start site region 39153
Tssk3 4 129489008 to 129490770 1762 - protein coding gene testis-specific serine kinase 3
Tssr43503 4 129490760 to 129490776 16 - TSS region transcription start site region 43503
Tssr39154 4 129490860 to 129490878 18 + TSS region transcription start site region 39154
Cpgi14894 4 129490930 to 129492020 1090 CpG island CpG island 14894
Tssr43504 4 129491059 to 129491060 1 - TSS region transcription start site region 43504
Tssr43505 4 129491085 to 129491095 10 - TSS region transcription start site region 43505
Tssr43506 4 129491108 to 129491119 11 - TSS region transcription start site region 43506
Tssr43507 4 129491130 to 129491131 1 - TSS region transcription start site region 43507
Fam229a 4 129491190 to 129491956 766 + protein coding gene family with sequence similarity 229, member A
Tssr39155 4 129491192 to 129491220 28 + TSS region transcription start site region 39155
Tssr39156 4 129491231 to 129491246 15 + TSS region transcription start site region 39156
Tssr1306 4 129491266 to 129491274 8 + TSS region transcription start site region 1306
Tssr39157 4 129491293 to 129491300 7 + TSS region transcription start site region 39157
Gm12979 4 129491969 to 129509746 17777 - antisense lncRNA gene predicted gene 12979
Cpgi14895 4 129500518 to 129501037 519 CpG island CpG island 14895
Tssr43508 4 129500770 to 129500784 14 - TSS region transcription start site region 43508
Tssr43509 4 129500799 to 129500838 39 - TSS region transcription start site region 43509
Tssr39158 4 129512494 to 129512520 26 + TSS region transcription start site region 39158
Tssr39159 4 129512551 to 129512567 16 + TSS region transcription start site region 39159
Cpgi14896 4 129513269 to 129514794 1525 CpG island CpG island 14896
Tssr39160 4 129513397 to 129513409 12 + TSS region transcription start site region 39160
Tssr39161 4 129513432 to 129513444 12 + TSS region transcription start site region 39161
Marcksl1 4 129513581 to 129515981 2400 + protein coding gene MARCKS-like 1
Tssr39162 4 129513624 to 129513644 20 + TSS region transcription start site region 39162
Tssr39163 4 129514757 to 129514774 17 + TSS region transcription start site region 39163
Tssr39164 4 129514964 to 129514981 17 + TSS region transcription start site region 39164
Tssr39165 4 129515135 to 129515180 45 + TSS region transcription start site region 39165
Tssr39166 4 129515340 to 129515350 10 + TSS region transcription start site region 39166
Tssr39167 4 129515496 to 129515508 12 + TSS region transcription start site region 39167
Tssr39168 4 129515590 to 129515605 15 + TSS region transcription start site region 39168
Tssr39169 4 129515619 to 129515642 23 + TSS region transcription start site region 39169
Tssr39170 4 129515684 to 129515689 5 + TSS region transcription start site region 39170
Tssr39171 4 129515805 to 129515844 39 + TSS region transcription start site region 39171
Tssr39172 4 129515875 to 129515912 37 + TSS region transcription start site region 39172
Hdac1 4 129516104 to 129542646 26542 - protein coding gene histone deacetylase 1
Cpgi14897 4 129541934 to 129542117 183 CpG island CpG island 14897
Cpgi14898 4 129542300 to 129543068 768 CpG island CpG island 14898
Tssr43510 4 129542674 to 129542707 33 - TSS region transcription start site region 43510
Tssr43511 4 129542710 to 129542727 17 - TSS region transcription start site region 43511
Lck 4 129548344 to 129573641 25297 - protein coding gene lymphocyte protein tyrosine kinase
Tssr43512 4 129550796 to 129550801 5 - TSS region transcription start site region 43512
Cpgi14899 4 129555488 to 129555752 264 CpG island CpG island 14899
Tssr43513 4 129555784 to 129555815 31 - TSS region transcription start site region 43513
Cpgi14900 4 129556136 to 129556764 628 CpG island CpG island 14900
Tssr43514 4 129556475 to 129556549 74 - TSS region transcription start site region 43514
Tssr39173 4 129556636 to 129556659 23 + TSS region transcription start site region 39173