Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129023403-129564159

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210 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr43453 4 129032701 to 129032730 29 - TSS region transcription start site region 43453
Tssr39098 4 129033434 to 129033447 13 + TSS region transcription start site region 39098
Tssr1304 4 129033783 to 129033798 15 - TSS region transcription start site region 1304
Tssr39099 4 129035376 to 129035399 23 + TSS region transcription start site region 39099
Tssr39100 4 129035658 to 129035664 6 + TSS region transcription start site region 39100
Cpgi14872 4 129048644 to 129049322 678 CpG island CpG island 14872
1700086P04Rik 4 129050097 to 129057983 7886 - lincRNA gene RIKEN cDNA 1700086P04 gene
Cpgi14873 4 129057801 to 129059422 1621 CpG island CpG island 14873
Tssr43454 4 129057957 to 129057988 31 - TSS region transcription start site region 43454
Tssr39101 4 129058075 to 129058091 16 + TSS region transcription start site region 39101
Tssr39102 4 129058098 to 129058122 24 + TSS region transcription start site region 39102
Tssr39103 4 129058133 to 129058152 19 + TSS region transcription start site region 39103
Rnf19b 4 129058146 to 129084526 26380 + protein coding gene ring finger protein 19B
Tssr39104 4 129058318 to 129058342 24 + TSS region transcription start site region 39104
Tssr43455 4 129058622 to 129058654 32 - TSS region transcription start site region 43455
D4Ertd179e 4 129060512 to 129060711 199 DNA segment DNA segment, Chr 4, ERATO Doi 179, expressed
Tssr39105 4 129066118 to 129066121 3 + TSS region transcription start site region 39105
Tssr39106 4 129070487 to 129070500 13 + TSS region transcription start site region 39106
Tssr39107 4 129070504 to 129070517 13 + TSS region transcription start site region 39107
Tssr39108 4 129070544 to 129070569 25 + TSS region transcription start site region 39108
Tssr39109 4 129072161 to 129072165 4 + TSS region transcription start site region 39109
Tssr39110 4 129077466 to 129077469 3 + TSS region transcription start site region 39110
Tssr39111 4 129080494 to 129080506 12 + TSS region transcription start site region 39111
Tssr39112 4 129080507 to 129080521 14 + TSS region transcription start site region 39112
Tssr39113 4 129082740 to 129082760 20 + TSS region transcription start site region 39113
Tssr39114 4 129082832 to 129082846 14 + TSS region transcription start site region 39114
Tssr39115 4 129083881 to 129083905 24 + TSS region transcription start site region 39115
Tssr39116 4 129084047 to 129084065 18 + TSS region transcription start site region 39116
Tssr43456 4 129084519 to 129084527 8 - TSS region transcription start site region 43456
Cpgi14874 4 129095300 to 129095490 190 CpG island CpG island 14874
Cpgi14875 4 129105258 to 129105789 531 CpG island CpG island 14875
Tssr39117 4 129105504 to 129105528 24 + TSS region transcription start site region 39117
Tssr39118 4 129105532 to 129105622 90 + TSS region transcription start site region 39118
Tmem54 4 129105548 to 129111626 6078 + protein coding gene transmembrane protein 54
Tssr39119 4 129105627 to 129105641 14 + TSS region transcription start site region 39119
Tssr39120 4 129106769 to 129106779 10 + TSS region transcription start site region 39120
Tssr39121 4 129106790 to 129106803 13 + TSS region transcription start site region 39121
Tssr39122 4 129106807 to 129106817 10 + TSS region transcription start site region 39122
Tssr39123 4 129107772 to 129107794 22 + TSS region transcription start site region 39123
Hpca 4 129111570 to 129122036 10466 - protein coding gene hippocalcin
Tssr43457 4 129111794 to 129111830 36 - TSS region transcription start site region 43457
Tssr43458 4 129111839 to 129111852 13 - TSS region transcription start site region 43458
Tssr43459 4 129111864 to 129111881 17 - TSS region transcription start site region 43459
Tssr43460 4 129111975 to 129111991 16 - TSS region transcription start site region 43460
Tssr43461 4 129112089 to 129112101 12 - TSS region transcription start site region 43461
Cpgi14876 4 129113106 to 129113447 341 CpG island CpG island 14876
Tssr43462 4 129118709 to 129118716 7 - TSS region transcription start site region 43462
Tssr43463 4 129118726 to 129118732 6 - TSS region transcription start site region 43463
Cpgi14877 4 129120656 to 129121971 1315 CpG island CpG island 14877
Tssr43464 4 129121234 to 129121315 81 - TSS region transcription start site region 43464
Tssr43465 4 129121581 to 129121600 19 - TSS region transcription start site region 43465
Tssr43466 4 129121601 to 129121624 23 - TSS region transcription start site region 43466
Tssr43467 4 129121647 to 129121662 15 - TSS region transcription start site region 43467
Tssr43468 4 129121699 to 129121734 35 - TSS region transcription start site region 43468
Tssr43469 4 129122052 to 129122063 11 - TSS region transcription start site region 43469
Tssr43470 4 129122064 to 129122095 31 - TSS region transcription start site region 43470
Cpgi14878 4 129125904 to 129126134 230 CpG island CpG island 14878
Gm15906 4 129135091 to 129136910 1819 + lincRNA gene predicted gene 15906
Cpgi14879 4 129136206 to 129137682 1476 CpG island CpG island 14879
Tssr39124 4 129136684 to 129136704 20 + TSS region transcription start site region 39124
Tssr39125 4 129136859 to 129136876 17 + TSS region transcription start site region 39125
Tssr39126 4 129136877 to 129136903 26 + TSS region transcription start site region 39126
Tssr39127 4 129136920 to 129136941 21 + TSS region transcription start site region 39127
Tssr39128 4 129136948 to 129136973 25 + TSS region transcription start site region 39128
Fndc5 4 129136999 to 129144593 7594 + protein coding gene fibronectin type III domain containing 5
S100pbp 4 129148005 to 129189727 41722 - protein coding gene S100P binding protein
Cpgi14880 4 129188779 to 129190354 1575 CpG island CpG island 14880
Tssr43471 4 129189431 to 129189448 17 - TSS region transcription start site region 43471
Tssr1305 4 129189458 to 129189483 25 - TSS region transcription start site region 1305
Tssr43472 4 129189569 to 129189594 25 - TSS region transcription start site region 43472
Tssr43473 4 129189600 to 129189631 31 - TSS region transcription start site region 43473
Tssr43474 4 129189646 to 129189697 51 - TSS region transcription start site region 43474
Yars 4 129189765 to 129219607 29842 + protein coding gene tyrosyl-tRNA synthetase
Tssr39129 4 129189863 to 129189956 93 + TSS region transcription start site region 39129
D4Ertd100e 4 129206668 to 129206900 232 DNA segment DNA segment, Chr 4, ERATO Doi 100, expressed
C77080 4 129219578 to 129261404 41826 - protein coding gene expressed sequence C77080
Tssr43475 4 129222377 to 129222391 14 - TSS region transcription start site region 43475
Tssr43476 4 129222716 to 129222733 17 - TSS region transcription start site region 43476
Tssr43477 4 129223138 to 129223153 15 - TSS region transcription start site region 43477
Tssr43478 4 129223245 to 129223256 11 - TSS region transcription start site region 43478
Cpgi14881 4 129223463 to 129224468 1005 CpG island CpG island 14881
Cpgi14882 4 129227556 to 129227768 212 CpG island CpG island 14882
Tssr43479 4 129227857 to 129227879 22 - TSS region transcription start site region 43479
Tssr43480 4 129227883 to 129227923 40 - TSS region transcription start site region 43480
Tssr43481 4 129228575 to 129228592 17 - TSS region transcription start site region 43481
Tssr43482 4 129230810 to 129230830 20 - TSS region transcription start site region 43482
Tssr43483 4 129231650 to 129231661 11 - TSS region transcription start site region 43483
Tssr39130 4 129231708 to 129231713 5 + TSS region transcription start site region 39130
Tssr39131 4 129231789 to 129231804 15 + TSS region transcription start site region 39131
Tssr39132 4 129231820 to 129231853 33 + TSS region transcription start site region 39132
Cpgi14883 4 129238143 to 129238424 281 CpG island CpG island 14883
Cpgi14884 4 129238672 to 129239524 852 CpG island CpG island 14884
Tssr43484 4 129239165 to 129239194 29 - TSS region transcription start site region 43484
Tssr43485 4 129239212 to 129239228 16 - TSS region transcription start site region 43485
Cpgi14885 4 129247741 to 129248911 1170 CpG island CpG island 14885
Tssr43486 4 129248415 to 129248430 15 - TSS region transcription start site region 43486
Tssr43487 4 129248431 to 129248498 67 - TSS region transcription start site region 43487
Tssr43488 4 129261394 to 129261406 12 - TSS region transcription start site region 43488
Gm12976 4 129261965 to 129265010 3045 + lincRNA gene predicted gene 12976
Tssr43489 4 129263475 to 129263482 7 - TSS region transcription start site region 43489
Tssr43490 4 129268770 to 129268828 58 - TSS region transcription start site region 43490
Cpgi14886 4 129276557 to 129276900 343 CpG island CpG island 14886
Gm22994 4 129282865 to 129282946 81 - miRNA gene predicted gene, 22994
Cpgi14887 4 129286937 to 129288231 1294 CpG island CpG island 14887
Tssr39133 4 129287614 to 129287644 30 + TSS region transcription start site region 39133
Sync 4 129287617 to 129308559 20942 + protein coding gene syncoilin
Tssr39134 4 129287646 to 129287666 20 + TSS region transcription start site region 39134
Tssr39135 4 129287673 to 129287685 12 + TSS region transcription start site region 39135
Tssr39136 4 129287698 to 129287713 15 + TSS region transcription start site region 39136
Tssr39137 4 129287722 to 129287738 16 + TSS region transcription start site region 39137
Cpgi14888 4 129293403 to 129294159 756 CpG island CpG island 14888
Rbbp4 4 129307100 to 129335370 28270 - protein coding gene retinoblastoma binding protein 4, chromatin remodeling factor
Tssr39138 4 129308413 to 129308418 5 + TSS region transcription start site region 39138
Gm26722 4 129309081 to 129318443 9362 + lincRNA gene predicted gene, 26722
Tssr43491 4 129309872 to 129309886 14 - TSS region transcription start site region 43491
Tssr39139 4 129312574 to 129312578 4 + TSS region transcription start site region 39139
Tssr39140 4 129327184 to 129327189 5 + TSS region transcription start site region 39140
Cpgi14889 4 129334606 to 129336004 1398 CpG island CpG island 14889
Tssr43492 4 129335243 to 129335264 21 - TSS region transcription start site region 43492
Tssr43493 4 129335297 to 129335317 20 - TSS region transcription start site region 43493
Tssr43494 4 129335324 to 129335377 53 - TSS region transcription start site region 43494
Zbtb8os 4 129335592 to 129347083 11491 + protein coding gene zinc finger and BTB domain containing 8 opposite strand
Tssr39141 4 129335593 to 129335645 52 + TSS region transcription start site region 39141
Tssr39142 4 129335962 to 129335987 25 + TSS region transcription start site region 39142
Tssr39143 4 129336016 to 129336041 25 + TSS region transcription start site region 39143
Zbtb8a 4 129353632 to 129378028 24396 - protein coding gene zinc finger and BTB domain containing 8a
Tssr43495 4 129374285 to 129374327 42 - TSS region transcription start site region 43495
Tssr39144 4 129375328 to 129375346 18 + TSS region transcription start site region 39144
Tssr43496 4 129376012 to 129376026 14 - TSS region transcription start site region 43496
Cpgi14890 4 129376829 to 129378079 1250 CpG island CpG island 14890
Tssr43497 4 129377826 to 129377838 12 - TSS region transcription start site region 43497
Tssr43498 4 129377847 to 129377924 77 - TSS region transcription start site region 43498
Tssr43499 4 129377933 to 129377950 17 - TSS region transcription start site region 43499
Tssr43500 4 129378996 to 129379006 10 - TSS region transcription start site region 43500
Gm12980 4 129379844 to 129380179 335 + pseudogene predicted gene 12980
Tssr39145 4 129381415 to 129381438 23 + TSS region transcription start site region 39145
C330020E22Rik 4 129382546 to 129407475 24929 + lncRNA gene RIKEN cDNA C330020E22 gene
Tssr39146 4 129382685 to 129382706 21 + TSS region transcription start site region 39146
Tssr39147 4 129382721 to 129382767 46 + TSS region transcription start site region 39147
Cpgi14891 4 129406491 to 129406825 334 CpG island CpG island 14891
Zbtb8b 4 129425765 to 129440853 15088 - protein coding gene zinc finger and BTB domain containing 8b
Cpgi14892 4 129440541 to 129440871 330 CpG island CpG island 14892
Tssr43501 4 129440800 to 129440823 23 - TSS region transcription start site region 43501
Tssr43502 4 129446966 to 129446971 5 - TSS region transcription start site region 43502
Tssr39148 4 129458350 to 129458351 1 + TSS region transcription start site region 39148
Gm24621 4 129458351 to 129458490 139 + snRNA gene predicted gene, 24621
4921504P20Rik 4 129460171 to 129461523 1352 unclassified gene RIKEN cDNA 4921504P20 gene
Cpgi14893 4 129461336 to 129462066 730 CpG island CpG island 14893
Tssr39149 4 129461661 to 129461689 28 + TSS region transcription start site region 39149
Bsdc1 4 129461679 to 129488498 26819 + protein coding gene BSD domain containing 1
Tssr39150 4 129464538 to 129464550 12 + TSS region transcription start site region 39150
Tssr39151 4 129474068 to 129474084 16 + TSS region transcription start site region 39151
Tssr39152 4 129487087 to 129487098 11 + TSS region transcription start site region 39152
Tssr39153 4 129487158 to 129487172 14 + TSS region transcription start site region 39153
Tssk3 4 129489008 to 129490770 1762 - protein coding gene testis-specific serine kinase 3
Tssr43503 4 129490760 to 129490776 16 - TSS region transcription start site region 43503
Tssr39154 4 129490860 to 129490878 18 + TSS region transcription start site region 39154
Cpgi14894 4 129490930 to 129492020 1090 CpG island CpG island 14894
Tssr43504 4 129491059 to 129491060 1 - TSS region transcription start site region 43504
Tssr43505 4 129491085 to 129491095 10 - TSS region transcription start site region 43505
Tssr43506 4 129491108 to 129491119 11 - TSS region transcription start site region 43506
Tssr43507 4 129491130 to 129491131 1 - TSS region transcription start site region 43507
Fam229a 4 129491190 to 129491956 766 + protein coding gene family with sequence similarity 229, member A
Tssr39155 4 129491192 to 129491220 28 + TSS region transcription start site region 39155
Tssr39156 4 129491231 to 129491246 15 + TSS region transcription start site region 39156
Tssr1306 4 129491266 to 129491274 8 + TSS region transcription start site region 1306
Tssr39157 4 129491293 to 129491300 7 + TSS region transcription start site region 39157
Gm12979 4 129491969 to 129509746 17777 - antisense lncRNA gene predicted gene 12979
Cpgi14895 4 129500518 to 129501037 519 CpG island CpG island 14895
Tssr43508 4 129500770 to 129500784 14 - TSS region transcription start site region 43508
Tssr43509 4 129500799 to 129500838 39 - TSS region transcription start site region 43509
Tssr39158 4 129512494 to 129512520 26 + TSS region transcription start site region 39158
Tssr39159 4 129512551 to 129512567 16 + TSS region transcription start site region 39159
Cpgi14896 4 129513269 to 129514794 1525 CpG island CpG island 14896
Tssr39160 4 129513397 to 129513409 12 + TSS region transcription start site region 39160
Tssr39161 4 129513432 to 129513444 12 + TSS region transcription start site region 39161
Marcksl1 4 129513581 to 129515981 2400 + protein coding gene MARCKS-like 1
Tssr39162 4 129513624 to 129513644 20 + TSS region transcription start site region 39162
Tssr39163 4 129514757 to 129514774 17 + TSS region transcription start site region 39163
Tssr39164 4 129514964 to 129514981 17 + TSS region transcription start site region 39164
Tssr39165 4 129515135 to 129515180 45 + TSS region transcription start site region 39165
Tssr39166 4 129515340 to 129515350 10 + TSS region transcription start site region 39166
Tssr39167 4 129515496 to 129515508 12 + TSS region transcription start site region 39167
Tssr39168 4 129515590 to 129515605 15 + TSS region transcription start site region 39168
Tssr39169 4 129515619 to 129515642 23 + TSS region transcription start site region 39169
Tssr39170 4 129515684 to 129515689 5 + TSS region transcription start site region 39170
Tssr39171 4 129515805 to 129515844 39 + TSS region transcription start site region 39171
Tssr39172 4 129515875 to 129515912 37 + TSS region transcription start site region 39172
Hdac1 4 129516104 to 129542646 26542 - protein coding gene histone deacetylase 1
Cpgi14897 4 129541934 to 129542117 183 CpG island CpG island 14897
Cpgi14898 4 129542300 to 129543068 768 CpG island CpG island 14898
Tssr43510 4 129542674 to 129542707 33 - TSS region transcription start site region 43510
Tssr43511 4 129542710 to 129542727 17 - TSS region transcription start site region 43511
Lck 4 129548344 to 129573641 25297 - protein coding gene lymphocyte protein tyrosine kinase
Tssr43512 4 129550796 to 129550801 5 - TSS region transcription start site region 43512
Cpgi14899 4 129555488 to 129555752 264 CpG island CpG island 14899
Tssr43513 4 129555784 to 129555815 31 - TSS region transcription start site region 43513
Cpgi14900 4 129556136 to 129556764 628 CpG island CpG island 14900
Tssr43514 4 129556475 to 129556549 74 - TSS region transcription start site region 43514
Tssr39173 4 129556636 to 129556659 23 + TSS region transcription start site region 39173