Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:127002592-128895951

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14833 4 127021198 to 127022549 1351 CpG island CpG island 14833
Tssr39027 4 127021285 to 127021292 7 + TSS region transcription start site region 39027
Tssr39028 4 127021294 to 127021299 5 + TSS region transcription start site region 39028
Tssr39029 4 127021311 to 127021339 28 + TSS region transcription start site region 39029
Sfpq 4 127021324 to 127037013 15689 + protein coding gene splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Tssr39030 4 127021978 to 127021992 14 + TSS region transcription start site region 39030
Tssr39031 4 127023332 to 127023354 22 + TSS region transcription start site region 39031
Tssr39032 4 127023406 to 127023434 28 + TSS region transcription start site region 39032
Tssr39033 4 127023439 to 127023460 21 + TSS region transcription start site region 39033
Tssr39034 4 127023478 to 127023509 31 + TSS region transcription start site region 39034
Tssr39035 4 127023658 to 127023740 82 + TSS region transcription start site region 39035
Tssr39036 4 127025849 to 127025914 65 + TSS region transcription start site region 39036
Tssr39037 4 127029846 to 127029899 53 + TSS region transcription start site region 39037
Tssr39038 4 127030167 to 127030178 11 + TSS region transcription start site region 39038
Gm12940 4 127033731 to 127049398 15667 + unclassified non-coding RNA gene predicted gene 12940
Tssr39039 4 127035099 to 127035115 16 + TSS region transcription start site region 39039
Tssr39040 4 127035668 to 127035678 10 + TSS region transcription start site region 39040
Gm12941 4 127046383 to 127046602 219 + pseudogene predicted gene 12941
Zmym1 4 127047094 to 127061152 14058 - protein coding gene zinc finger, MYM domain containing 1
Gm12944 4 127056262 to 127056724 462 + pseudogene predicted gene 12944
Cpgi14834 4 127060878 to 127061275 397 CpG island CpG island 14834
Tssr43412 4 127061085 to 127061125 40 - TSS region transcription start site region 43412
Tssr43413 4 127061126 to 127061143 17 - TSS region transcription start site region 43413
Cpgi14835 4 127076976 to 127077660 684 CpG island CpG island 14835
Tssr39041 4 127077374 to 127077461 87 + TSS region transcription start site region 39041
Zmym6 4 127077383 to 127124372 46989 + protein coding gene zinc finger, MYM-type 6
Gm25600 4 127108466 to 127108571 105 - snRNA gene predicted gene, 25600
Tssr39042 4 127109808 to 127109813 5 + TSS region transcription start site region 39042
Cpgi14836 4 127125838 to 127126351 513 CpG island CpG island 14836
Tssr39043 4 127126034 to 127126081 47 + TSS region transcription start site region 39043
Tmem35b 4 127126043 to 127129660 3617 + protein coding gene transmembrane protein 35B
Gm12943 4 127141279 to 127141488 209 - pseudogene predicted gene 12943
Tssr43414 4 127141483 to 127141511 28 - TSS region transcription start site region 43414
Cpgi14837 4 127150159 to 127150326 167 CpG island CpG island 14837
Cpgi14838 4 127168177 to 127170077 1900 CpG island CpG island 14838
Tssr39044 4 127168291 to 127168304 13 + TSS region transcription start site region 39044
Tssr39045 4 127168310 to 127168348 38 + TSS region transcription start site region 39045
Tssr39046 4 127168351 to 127168361 10 + TSS region transcription start site region 39046
Tssr39047 4 127168531 to 127168551 20 + TSS region transcription start site region 39047
Tssr39048 4 127168627 to 127168652 25 + TSS region transcription start site region 39048
Tssr39049 4 127168655 to 127168682 27 + TSS region transcription start site region 39049
Tssr39050 4 127168758 to 127168779 21 + TSS region transcription start site region 39050
Tssr39051 4 127168956 to 127168969 13 + TSS region transcription start site region 39051
Tssr39052 4 127169131 to 127169230 99 + TSS region transcription start site region 39052
Dlgap3 4 127169204 to 127237022 67818 + protein coding gene DLG associated protein 3
Tssr39053 4 127172866 to 127172898 32 + TSS region transcription start site region 39053
Tssr39054 4 127173220 to 127173233 13 + TSS region transcription start site region 39054
Cpgi14839 4 127195004 to 127195209 205 CpG island CpG island 14839
Tssr39055 4 127195231 to 127195262 31 + TSS region transcription start site region 39055
Cpgi14840 4 127199637 to 127199903 266 CpG island CpG island 14840
Tssr39056 4 127208291 to 127208303 12 + TSS region transcription start site region 39056
Tssr39057 4 127210307 to 127210329 22 + TSS region transcription start site region 39057
Cpgi14841 4 127214292 to 127215019 727 CpG island CpG island 14841
Tssr39058 4 127214745 to 127214777 32 + TSS region transcription start site region 39058
Cpgi14842 4 127233496 to 127233994 498 CpG island CpG island 14842
Cpgi14843 4 127235390 to 127236944 1554 CpG island CpG island 14843
Cpgi14844 4 127243546 to 127244336 790 CpG island CpG island 14844
Smim12 4 127243784 to 127247809 4025 + protein coding gene small integral membrane protein 12
Tssr39059 4 127243788 to 127243856 68 + TSS region transcription start site region 39059
Gm33269 4 127248669 to 127313366 64697 + lncRNA gene predicted gene, 33269
Cpgi14845 4 127251798 to 127252279 481 CpG island CpG island 14845
Tssr43415 4 127252367 to 127252390 23 - TSS region transcription start site region 43415
Tssr39060 4 127262313 to 127262318 5 + TSS region transcription start site region 39060
Gm22221 4 127284731 to 127284833 102 - snRNA gene predicted gene, 22221
Gm12948 4 127296916 to 127297475 559 - pseudogene predicted gene 12948
Gja4 4 127311421 to 127314039 2618 - protein coding gene gap junction protein, alpha 4
Cpgi14846 4 127313777 to 127314223 446 CpG island CpG island 14846
Tssr43416 4 127313980 to 127313998 18 - TSS region transcription start site region 43416
Gjb3 4 127325235 to 127330836 5601 - protein coding gene gap junction protein, beta 3
Cpgi14847 4 127326117 to 127326714 597 CpG island CpG island 14847
Tssr43417 4 127326219 to 127326246 27 - TSS region transcription start site region 43417
Tssr43418 4 127329098 to 127329155 57 - TSS region transcription start site region 43418
Gm40251 4 127329245 to 127343262 14017 + lncRNA gene predicted gene, 40251
Cpgi14848 4 127330196 to 127330997 801 CpG island CpG island 14848
Tssr43419 4 127330547 to 127330626 79 - TSS region transcription start site region 43419
Tssr43420 4 127330775 to 127330786 11 - TSS region transcription start site region 43420
Tssr43421 4 127330799 to 127330845 46 - TSS region transcription start site region 43421
Cpgi14849 4 127342172 to 127342489 317 CpG island CpG island 14849
Tssr43422 4 127350699 to 127350710 11 - TSS region transcription start site region 43422
Gjb4 4 127351086 to 127354081 2995 - protein coding gene gap junction protein, beta 4
Tssr43423 4 127354074 to 127354086 12 - TSS region transcription start site region 43423
Tssr43424 4 127354209 to 127354219 10 - TSS region transcription start site region 43424
Gjb5 4 127354809 to 127358164 3355 - protein coding gene gap junction protein, beta 5
Tssr43425 4 127358104 to 127358107 3 - TSS region transcription start site region 43425
Tssr43426 4 127358109 to 127358120 11 - TSS region transcription start site region 43426
Tssr43427 4 127358124 to 127358187 63 - TSS region transcription start site region 43427
Tssr43428 4 127358195 to 127358208 13 - TSS region transcription start site region 43428
D4Mit336 4 127361763 to 127361884 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 336
Tssr39061 4 127371756 to 127371759 3 + TSS region transcription start site region 39061
D4Mit223 4 127388478 to 127388625 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 223
Gm12947 4 127408379 to 127408798 419 - pseudogene predicted gene 12947
Tssr43429 4 127408818 to 127408820 2 - TSS region transcription start site region 43429
Gm40252 4 127417126 to 127424822 7696 + lncRNA gene predicted gene, 40252
4930471C06Rik 4 127474848 to 127476840 1992 + lincRNA gene RIKEN cDNA 4930471C06 gene
Tssr39062 4 127522439 to 127522450 11 + TSS region transcription start site region 39062
D4Mit337 4 127524621 to 127524883 262 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 337
1700080G11Rik 4 127531622 to 127532885 1263 + lincRNA gene RIKEN cDNA 1700080G11 gene
Tssr43430 4 127534653 to 127534670 17 - TSS region transcription start site region 43430
Tssr43431 4 127534673 to 127534679 6 - TSS region transcription start site region 43431
A630031M04Rik 4 127545101 to 127570502 25401 + lincRNA gene RIKEN cDNA A630031M04 gene
Gm40255 4 127618745 to 127619853 1108 + lncRNA gene predicted gene, 40255
Cpgi14850 4 127620009 to 127620164 155 CpG island CpG island 14850
1700112K13Rik 4 127810638 to 127812173 1535 - lincRNA gene RIKEN cDNA 1700112K13 gene
Gm40256 4 127913883 to 127916424 2541 + lncRNA gene predicted gene, 40256
CK137956 4 127927592 to 127970951 43359 - protein coding gene cDNA sequence CK137956
Tssr39063 4 127968486 to 127968496 10 + TSS region transcription start site region 39063
Cpgi14851 4 127971208 to 127972003 795 CpG island CpG island 14851
Gm38571 4 127971645 to 127972450 805 + lncRNA gene predicted gene, 38571
Tssr43432 4 127971666 to 127971709 43 - TSS region transcription start site region 43432
Tssr43433 4 127971714 to 127971723 9 - TSS region transcription start site region 43433
Cpgi14852 4 127986502 to 127986988 486 CpG island CpG island 14852
Cpgi14853 4 127987339 to 127989354 2015 CpG island CpG island 14853
Csmd2 4 127987857 to 128567656 579799 + protein coding gene CUB and Sushi multiple domains 2
Tssr39064 4 127987888 to 127987910 22 + TSS region transcription start site region 39064
Tssr39065 4 127987994 to 127988047 53 + TSS region transcription start site region 39065
Tssr43434 4 128051167 to 128051170 3 - TSS region transcription start site region 43434
D4Dcr25 4 128115255 to 128115350 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 25
Dyscalc2 4 128115258 to 128115487 229 QTL dystrophic cardiac calcinosis 2
D4Mit16 4 128115258 to 128115487 229 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 16
Skull6 4 128115258 to 128115487 229 QTL skull morphology 6
Sbw2 4 128115487 to 95069342 -33046145 QTL splenomegaly-NZB x NZW 2
Anxty 4 128115487 to 74219337 -53896150 QTL anxiety
Lbw2 4 128115487 to 98657302 -29458185 QTL lupus NZB x NZW 2
Csmd2os 4 128133523 to 128166967 33444 - antisense lncRNA gene CUB and Sushi multiple domains 2, opposite strand
Tssr39066 4 128221116 to 128221120 4 + TSS region transcription start site region 39066
Hmgb4 4 128260212 to 128260895 683 - protein coding gene high-mobility group box 4
Tssr43435 4 128260888 to 128260900 12 - TSS region transcription start site region 43435
Tssr43436 4 128260917 to 128260922 5 - TSS region transcription start site region 43436
Hmgb4os 4 128261044 to 128262990 1946 + antisense lncRNA gene high-mobility group box 4, opposite strand
Tssr39067 4 128318974 to 128319011 37 + TSS region transcription start site region 39067
Gm33656 4 128506211 to 128533358 27147 - lncRNA gene predicted gene, 33656
Cpgi14854 4 128546602 to 128546861 259 CpG island CpG island 14854
Zscan20 4 128583539 to 128610098 26559 - protein coding gene zinc finger and SCAN domains 20
Cpgi14855 4 128609667 to 128610276 609 CpG island CpG island 14855
Tlr12 4 128615446 to 128618619 3173 - protein coding gene toll-like receptor 12
Tssr43437 4 128618316 to 128618327 11 - TSS region transcription start site region 43437
Tssr43438 4 128618572 to 128618597 25 - TSS region transcription start site region 43438
Tssr43439 4 128618609 to 128618625 16 - TSS region transcription start site region 43439
Tssr43440 4 128618628 to 128618646 18 - TSS region transcription start site region 43440
Cpgi14856 4 128630146 to 128630585 439 CpG island CpG island 14856
Gm12958 4 128637471 to 128638447 976 + lincRNA gene predicted gene 12958
Cpgi14857 4 128654453 to 128655415 962 CpG island CpG island 14857
Tssr39068 4 128654686 to 128654729 43 + TSS region transcription start site region 39068
Phc2 4 128654702 to 128752881 98179 + protein coding gene polyhomeotic 2
Tssr39069 4 128688726 to 128688750 24 + TSS region transcription start site region 39069
Cpgi14858 4 128711599 to 128711807 208 CpG island CpG island 14858
Tssr39070 4 128711843 to 128711879 36 + TSS region transcription start site region 39070
Tssr39071 4 128722181 to 128722191 10 + TSS region transcription start site region 39071
Cpgi14859 4 128726941 to 128728425 1484 CpG island CpG island 14859
Tssr39072 4 128727568 to 128727579 11 + TSS region transcription start site region 39072
Tssr39073 4 128727589 to 128727644 55 + TSS region transcription start site region 39073
Tssr39074 4 128743433 to 128743452 19 + TSS region transcription start site region 39074
Tssr39075 4 128744990 to 128745009 19 + TSS region transcription start site region 39075
Tssr39076 4 128745049 to 128745067 18 + TSS region transcription start site region 39076
Tssr43441 4 128745084 to 128745128 44 - TSS region transcription start site region 43441
Tssr39077 4 128747124 to 128747144 20 + TSS region transcription start site region 39077
Cpgi14860 4 128747920 to 128748234 314 CpG island CpG island 14860
Tssr39078 4 128752054 to 128752091 37 + TSS region transcription start site region 39078
A3galt2 4 128759258 to 128770201 10943 + protein coding gene alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)
Cpgi14861 4 128766947 to 128767629 682 CpG island CpG island 14861
Zfp362 4 128773088 to 128806045 32957 - protein coding gene zinc finger protein 362
Tssr43442 4 128786216 to 128786227 11 - TSS region transcription start site region 43442
Tssr43443 4 128786456 to 128786485 29 - TSS region transcription start site region 43443
Tssr43444 4 128787211 to 128787214 3 - TSS region transcription start site region 43444
Cpgi14862 4 128789824 to 128790074 250 CpG island CpG island 14862
Cpgi14863 4 128805468 to 128807202 1734 CpG island CpG island 14863
Tssr39079 4 128805763 to 128805779 16 + TSS region transcription start site region 39079
Tssr43445 4 128806103 to 128806167 64 - TSS region transcription start site region 43445
Tssr43446 4 128806178 to 128806186 8 - TSS region transcription start site region 43446
Tssr43447 4 128806290 to 128806369 79 - TSS region transcription start site region 43447
Tssr43448 4 128806436 to 128806471 35 - TSS region transcription start site region 43448
Tssr43449 4 128806487 to 128806513 26 - TSS region transcription start site region 43449
Tssr39080 4 128808379 to 128808386 7 + TSS region transcription start site region 39080
Tssr39081 4 128846163 to 128846166 3 + TSS region transcription start site region 39081
Gm12968 4 128846197 to 128873698 27501 + lincRNA gene predicted gene 12968
D4Dcr26 4 128855509 to 128855604 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 26
Gm12969 4 128868393 to 128869396 1003 - pseudogene predicted gene 12969
Gm33814 4 128871998 to 128877440 5442 - lncRNA gene predicted gene, 33814
Cpgi14864 4 128873044 to 128873281 237 CpG island CpG island 14864
Cpgi14865 4 128874101 to 128874266 165 CpG island CpG island 14865
Cpgi14866 4 128883332 to 128884831 1499 CpG island CpG island 14866
Tssr39082 4 128883549 to 128883611 62 + TSS region transcription start site region 39082
Trim62 4 128883580 to 128911328 27748 + protein coding gene tripartite motif-containing 62
Tssr39083 4 128884039 to 128884050 11 + TSS region transcription start site region 39083
Tssr39084 4 128884098 to 128884114 16 + TSS region transcription start site region 39084