Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:100980236-101550254

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cachd1 4 100776679 to 101003749 227070 + protein coding gene cache domain containing 1
Tssr37976 4 100994606 to 100994633 27 + TSS region transcription start site region 37976
D4Mit304 4 101001053 to 101001169 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 304
Tssr37977 4 101002976 to 101003006 30 + TSS region transcription start site region 37977
Gm10577 4 101020298 to 101020696 398 - protein coding gene predicted gene 10577
Gm10576 4 101054439 to 101055263 824 - protein coding gene predicted gene 10576
Cpgi14496 4 101068687 to 101069847 1160 CpG island CpG island 14496
Tssr37978 4 101068974 to 101068988 14 + TSS region transcription start site region 37978
Tssr37979 4 101068993 to 101069029 36 + TSS region transcription start site region 37979
Tssr37980 4 101069035 to 101069074 39 + TSS region transcription start site region 37980
Raver2 4 101069038 to 101152370 83332 + protein coding gene ribonucleoprotein, PTB-binding 2
Tssr37981 4 101069083 to 101069094 11 + TSS region transcription start site region 37981
Gm35956 4 101074025 to 101076703 2678 + lncRNA gene predicted gene, 35956
Gm22100 4 101103588 to 101103650 62 - snRNA gene predicted gene, 22100
Jak1 4 101152367 to 101265282 112915 - protein coding gene Janus kinase 1
Tssr42541 4 101162941 to 101162944 3 - TSS region transcription start site region 42541
Tssr42542 4 101172116 to 101172118 2 - TSS region transcription start site region 42542
Tssr42543 4 101179886 to 101179900 14 - TSS region transcription start site region 42543
Tssr42544 4 101182778 to 101182779 1 - TSS region transcription start site region 42544
Tssr42545 4 101185379 to 101185387 8 - TSS region transcription start site region 42545
Tssr37982 4 101185572 to 101185576 4 + TSS region transcription start site region 37982
Gm24468 4 101186764 to 101186867 103 + snRNA gene predicted gene, 24468
Tssr37983 4 101187627 to 101187632 5 + TSS region transcription start site region 37983
Gm12785 4 101210416 to 101210587 171 - pseudogene predicted gene 12785
Tssr37984 4 101217783 to 101217818 35 + TSS region transcription start site region 37984
Gm19063 4 101219763 to 101220279 516 + pseudogene predicted gene, 19063
Tssr42546 4 101253606 to 101253610 4 - TSS region transcription start site region 42546
D4Mit305 4 101256124 to 101256233 109 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 305
Cpgi14497 4 101264444 to 101265699 1255 CpG island CpG island 14497
Tssr42547 4 101264856 to 101264878 22 - TSS region transcription start site region 42547
Tssr42548 4 101265214 to 101265231 17 - TSS region transcription start site region 42548
Tssr42549 4 101265236 to 101265254 18 - TSS region transcription start site region 42549
Gm25124 4 101271143 to 101271306 163 + snRNA gene predicted gene, 25124
Gm12801 4 101284221 to 101285203 982 + lincRNA gene predicted gene 12801
Cpgi14498 4 101291956 to 101293511 1555 CpG island CpG island 14498
Tssr37985 4 101292249 to 101292278 29 + TSS region transcription start site region 37985
Tssr37986 4 101292298 to 101292308 10 + TSS region transcription start site region 37986
Tssr37987 4 101292325 to 101292335 10 + TSS region transcription start site region 37987
Gm12796 4 101292414 to 101321745 29331 - lincRNA gene predicted gene 12796
Tssr42550 4 101293122 to 101293170 48 - TSS region transcription start site region 42550
Gm12793 4 101341357 to 101341648 291 + pseudogene predicted gene 12793
E130102H24Rik 4 101346524 to 101356248 9724 - lincRNA gene RIKEN cDNA E130102H24 gene
Tssr42551 4 101346942 to 101346957 15 - TSS region transcription start site region 42551
Mir101a 4 101346945 to 101347027 82 - miRNA gene microRNA 101a
D4Mit277 4 101351043 to 101351141 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 277
0610043K17Rik 4 101353783 to 101399181 45398 + lincRNA gene RIKEN cDNA 0610043K17 gene
Tssr42552 4 101355296 to 101355302 6 - TSS region transcription start site region 42552
Cpgi14499 4 101355518 to 101357178 1660 CpG island CpG island 14499
Tssr37988 4 101355860 to 101355883 23 + TSS region transcription start site region 37988
Tssr42553 4 101355885 to 101355929 44 - TSS region transcription start site region 42553
Tssr42554 4 101356111 to 101356178 67 - TSS region transcription start site region 42554
Tssr42555 4 101356359 to 101356503 144 - TSS region transcription start site region 42555
Tssr42556 4 101356507 to 101356518 11 - TSS region transcription start site region 42556
Tssr42557 4 101356705 to 101356729 24 - TSS region transcription start site region 42557
Tssr42558 4 101356731 to 101356750 19 - TSS region transcription start site region 42558
Tssr42559 4 101356791 to 101356793 2 - TSS region transcription start site region 42559
Gm12795 4 101362177 to 101362890 713 - pseudogene predicted gene 12795
Tssr42560 4 101390555 to 101390573 18 - TSS region transcription start site region 42560
Tssr42561 4 101390590 to 101390602 12 - TSS region transcription start site region 42561
Gm12798 4 101403081 to 101407856 4775 + lincRNA gene predicted gene 12798
Cpgi14500 4 101419059 to 101420717 1658 CpG island CpG island 14500
Ak4 4 101419277 to 101466995 47718 + protein coding gene adenylate kinase 4
Tssr37989 4 101419301 to 101419332 31 + TSS region transcription start site region 37989
Tssr37990 4 101419335 to 101419349 14 + TSS region transcription start site region 37990
Tssr37991 4 101419359 to 101419378 19 + TSS region transcription start site region 37991
Tssr37992 4 101419696 to 101419732 36 + TSS region transcription start site region 37992
Tssr37993 4 101420153 to 101420196 43 + TSS region transcription start site region 37993
D4Ertd298e 4 101424788 to 101425037 249 DNA segment DNA segment, Chr 4, ERATO Doi 298, expressed
Tssr37994 4 101446797 to 101446803 6 + TSS region transcription start site region 37994
D4Mit176 4 101492003 to 101492140 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 176
D4Mit176.3 4 101492155 to 101492309 154 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 176.3
Cpgi14501 4 101496135 to 101497191 1056 CpG island CpG island 14501
Tssr37995 4 101496545 to 101496598 53 + TSS region transcription start site region 37995
Dnajc6 4 101496648 to 101642799 146151 + protein coding gene DnaJ heat shock protein family (Hsp40) member C6
Tssr37996 4 101496676 to 101496722 46 + TSS region transcription start site region 37996
Tssr37997 4 101507477 to 101507495 18 + TSS region transcription start site region 37997
Tssr37998 4 101507761 to 101507772 11 + TSS region transcription start site region 37998
Tssr37999 4 101507784 to 101507800 16 + TSS region transcription start site region 37999
Tssr38000 4 101507855 to 101507868 13 + TSS region transcription start site region 38000
Tssr38001 4 101507931 to 101507941 10 + TSS region transcription start site region 38001
Tssr38002 4 101507947 to 101508032 85 + TSS region transcription start site region 38002
Tssr38003 4 101508099 to 101508130 31 + TSS region transcription start site region 38003
Cpgi14502 4 101508894 to 101509246 352 CpG island CpG island 14502
Gm36012 4 101543298 to 101556812 13514 - lncRNA gene predicted gene, 36012
Cpgi14503 4 101549998 to 101551186 1188 CpG island CpG island 14503