Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:100842715-103332734

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300 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cachd1 4 100776679 to 101003749 227070 + protein coding gene cache domain containing 1
Tssr1240 4 100861411 to 100861418 7 + TSS region transcription start site region 1240
Tssr37975 4 100911491 to 100911501 10 + TSS region transcription start site region 37975
Tssr37976 4 100994606 to 100994633 27 + TSS region transcription start site region 37976
D4Mit304 4 101001053 to 101001169 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 304
Tssr37977 4 101002976 to 101003006 30 + TSS region transcription start site region 37977
Gm10577 4 101020298 to 101020696 398 - protein coding gene predicted gene 10577
Gm10576 4 101054439 to 101055263 824 - protein coding gene predicted gene 10576
Cpgi14496 4 101068687 to 101069847 1160 CpG island CpG island 14496
Tssr37978 4 101068974 to 101068988 14 + TSS region transcription start site region 37978
Tssr37979 4 101068993 to 101069029 36 + TSS region transcription start site region 37979
Tssr37980 4 101069035 to 101069074 39 + TSS region transcription start site region 37980
Raver2 4 101069038 to 101152370 83332 + protein coding gene ribonucleoprotein, PTB-binding 2
Tssr37981 4 101069083 to 101069094 11 + TSS region transcription start site region 37981
Gm35956 4 101074025 to 101076703 2678 + lncRNA gene predicted gene, 35956
Gm22100 4 101103588 to 101103650 62 - snRNA gene predicted gene, 22100
Jak1 4 101152367 to 101265282 112915 - protein coding gene Janus kinase 1
Tssr42541 4 101162941 to 101162944 3 - TSS region transcription start site region 42541
Tssr42542 4 101172116 to 101172118 2 - TSS region transcription start site region 42542
Tssr42543 4 101179886 to 101179900 14 - TSS region transcription start site region 42543
Tssr42544 4 101182778 to 101182779 1 - TSS region transcription start site region 42544
Tssr42545 4 101185379 to 101185387 8 - TSS region transcription start site region 42545
Tssr37982 4 101185572 to 101185576 4 + TSS region transcription start site region 37982
Gm24468 4 101186764 to 101186867 103 + snRNA gene predicted gene, 24468
Tssr37983 4 101187627 to 101187632 5 + TSS region transcription start site region 37983
Gm12785 4 101210416 to 101210587 171 - pseudogene predicted gene 12785
Tssr37984 4 101217783 to 101217818 35 + TSS region transcription start site region 37984
Gm19063 4 101219763 to 101220279 516 + pseudogene predicted gene, 19063
Tssr42546 4 101253606 to 101253610 4 - TSS region transcription start site region 42546
D4Mit305 4 101256124 to 101256233 109 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 305
Cpgi14497 4 101264444 to 101265699 1255 CpG island CpG island 14497
Tssr42547 4 101264856 to 101264878 22 - TSS region transcription start site region 42547
Tssr42548 4 101265214 to 101265231 17 - TSS region transcription start site region 42548
Tssr42549 4 101265236 to 101265254 18 - TSS region transcription start site region 42549
Gm25124 4 101271143 to 101271306 163 + snRNA gene predicted gene, 25124
Gm12801 4 101284221 to 101285203 982 + lincRNA gene predicted gene 12801
Cpgi14498 4 101291956 to 101293511 1555 CpG island CpG island 14498
Tssr37985 4 101292249 to 101292278 29 + TSS region transcription start site region 37985
Tssr37986 4 101292298 to 101292308 10 + TSS region transcription start site region 37986
Tssr37987 4 101292325 to 101292335 10 + TSS region transcription start site region 37987
Gm12796 4 101292414 to 101321745 29331 - lincRNA gene predicted gene 12796
Tssr42550 4 101293122 to 101293170 48 - TSS region transcription start site region 42550
Gm12793 4 101341357 to 101341648 291 + pseudogene predicted gene 12793
E130102H24Rik 4 101346524 to 101356248 9724 - lincRNA gene RIKEN cDNA E130102H24 gene
Tssr42551 4 101346942 to 101346957 15 - TSS region transcription start site region 42551
Mir101a 4 101346945 to 101347027 82 - miRNA gene microRNA 101a
D4Mit277 4 101351043 to 101351141 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 277
0610043K17Rik 4 101353783 to 101399181 45398 + lincRNA gene RIKEN cDNA 0610043K17 gene
Tssr42552 4 101355296 to 101355302 6 - TSS region transcription start site region 42552
Cpgi14499 4 101355518 to 101357178 1660 CpG island CpG island 14499
Tssr37988 4 101355860 to 101355883 23 + TSS region transcription start site region 37988
Tssr42553 4 101355885 to 101355929 44 - TSS region transcription start site region 42553
Tssr42554 4 101356111 to 101356178 67 - TSS region transcription start site region 42554
Tssr42555 4 101356359 to 101356503 144 - TSS region transcription start site region 42555
Tssr42556 4 101356507 to 101356518 11 - TSS region transcription start site region 42556
Tssr42557 4 101356705 to 101356729 24 - TSS region transcription start site region 42557
Tssr42558 4 101356731 to 101356750 19 - TSS region transcription start site region 42558
Tssr42559 4 101356791 to 101356793 2 - TSS region transcription start site region 42559
Gm12795 4 101362177 to 101362890 713 - pseudogene predicted gene 12795
Tssr42560 4 101390555 to 101390573 18 - TSS region transcription start site region 42560
Tssr42561 4 101390590 to 101390602 12 - TSS region transcription start site region 42561
Gm12798 4 101403081 to 101407856 4775 + lincRNA gene predicted gene 12798
Cpgi14500 4 101419059 to 101420717 1658 CpG island CpG island 14500
Ak4 4 101419277 to 101466995 47718 + protein coding gene adenylate kinase 4
Tssr37989 4 101419301 to 101419332 31 + TSS region transcription start site region 37989
Tssr37990 4 101419335 to 101419349 14 + TSS region transcription start site region 37990
Tssr37991 4 101419359 to 101419378 19 + TSS region transcription start site region 37991
Tssr37992 4 101419696 to 101419732 36 + TSS region transcription start site region 37992
Tssr37993 4 101420153 to 101420196 43 + TSS region transcription start site region 37993
D4Ertd298e 4 101424788 to 101425037 249 DNA segment DNA segment, Chr 4, ERATO Doi 298, expressed
Tssr37994 4 101446797 to 101446803 6 + TSS region transcription start site region 37994
D4Mit176 4 101492003 to 101492140 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 176
D4Mit176.3 4 101492155 to 101492309 154 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 176.3
Cpgi14501 4 101496135 to 101497191 1056 CpG island CpG island 14501
Tssr37995 4 101496545 to 101496598 53 + TSS region transcription start site region 37995
Dnajc6 4 101496648 to 101642799 146151 + protein coding gene DnaJ heat shock protein family (Hsp40) member C6
Tssr37996 4 101496676 to 101496722 46 + TSS region transcription start site region 37996
Tssr37997 4 101507477 to 101507495 18 + TSS region transcription start site region 37997
Tssr37998 4 101507761 to 101507772 11 + TSS region transcription start site region 37998
Tssr37999 4 101507784 to 101507800 16 + TSS region transcription start site region 37999
Tssr38000 4 101507855 to 101507868 13 + TSS region transcription start site region 38000
Tssr38001 4 101507931 to 101507941 10 + TSS region transcription start site region 38001
Tssr38002 4 101507947 to 101508032 85 + TSS region transcription start site region 38002
Tssr38003 4 101508099 to 101508130 31 + TSS region transcription start site region 38003
Cpgi14502 4 101508894 to 101509246 352 CpG island CpG island 14502
Gm36012 4 101543298 to 101556812 13514 - lncRNA gene predicted gene, 36012
Cpgi14503 4 101549998 to 101551186 1188 CpG island CpG island 14503
Tssr38004 4 101550299 to 101550327 28 + TSS region transcription start site region 38004
Tssr38005 4 101550340 to 101550374 34 + TSS region transcription start site region 38005
Tssr38006 4 101550377 to 101550398 21 + TSS region transcription start site region 38006
Tssr38007 4 101550411 to 101550432 21 + TSS region transcription start site region 38007
Tssr38008 4 101550799 to 101550824 25 + TSS region transcription start site region 38008
Tssr42562 4 101551197 to 101551202 5 - TSS region transcription start site region 42562
Gm22533 4 101555095 to 101555368 273 + unclassified non-coding RNA gene predicted gene, 22533
Cpgi14504 4 101647118 to 101648153 1035 CpG island CpG island 14504
Tssr38009 4 101647676 to 101647711 35 + TSS region transcription start site region 38009
Tssr38010 4 101647712 to 101647736 24 + TSS region transcription start site region 38010
Tssr38011 4 101647742 to 101647762 20 + TSS region transcription start site region 38011
Tssr38012 4 101647763 to 101647797 34 + TSS region transcription start site region 38012
Leprot 4 101647783 to 101659358 11575 + protein coding gene leptin receptor overlapping transcript
Tssr38013 4 101656140 to 101656158 18 + TSS region transcription start site region 38013
Cpgi14505 4 101717132 to 101718168 1036 CpG island CpG island 14505
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Lepr 4 101717404 to 101815352 97948 + protein coding gene leptin receptor
Tssr38014 4 101717454 to 101717462 8 + TSS region transcription start site region 38014
Tssr38015 4 101717582 to 101717593 11 + TSS region transcription start site region 38015
Tssr38016 4 101717633 to 101717644 11 + TSS region transcription start site region 38016
Tssr38017 4 101717805 to 101717838 33 + TSS region transcription start site region 38017
Tssr38018 4 101717862 to 101717873 11 + TSS region transcription start site region 38018
Tssr38019 4 101717896 to 101717910 14 + TSS region transcription start site region 38019
Tssr1241 4 101728522 to 101728526 4 + TSS region transcription start site region 1241
Tssr38020 4 101776238 to 101776245 7 + TSS region transcription start site region 38020
B020004J07Rik 4 101834969 to 101844022 9053 - protein coding gene RIKEN cDNA B020004J07 gene
Gm12791 4 101875347 to 101876001 654 + pseudogene predicted gene 12791
Gm12797 4 101884040 to 101884312 272 + pseudogene predicted gene 12797
C130073F10Rik 4 101890024 to 101893788 3764 - protein coding gene RIKEN cDNA C130073F10 gene
Gm12792 4 101895967 to 101896982 1015 - pseudogene predicted gene 12792
Gm12800 4 101909121 to 101911908 2787 + protein coding gene predicted gene 12800
Gm12794 4 101940407 to 101943183 2776 + protein coding gene predicted gene 12794
Gm12790 4 101967453 to 101981049 13596 - protein coding gene predicted gene 12790
Gm12789 4 101986840 to 101990231 3391 + protein coding gene predicted gene 12789
Gm12799 4 102046568 to 102049127 2559 - pseudogene predicted gene 12799
Cpgi14506 4 102087308 to 102088353 1045 CpG island CpG island 14506
Pde4b 4 102087543 to 102607259 519716 + protein coding gene phosphodiesterase 4B, cAMP specific
Tssr38021 4 102087615 to 102087694 79 + TSS region transcription start site region 38021
Tssr38022 4 102087715 to 102087734 19 + TSS region transcription start site region 38022
Tssr38023 4 102224890 to 102224895 5 + TSS region transcription start site region 38023
Tssr38024 4 102235548 to 102235558 10 + TSS region transcription start site region 38024
Tssr38025 4 102254739 to 102254761 22 + TSS region transcription start site region 38025
Tssr38026 4 102254920 to 102254931 11 + TSS region transcription start site region 38026
Tssr38027 4 102254933 to 102254943 10 + TSS region transcription start site region 38027
Tssr38028 4 102254993 to 102255000 7 + TSS region transcription start site region 38028
Tssr38029 4 102255034 to 102255057 23 + TSS region transcription start site region 38029
Tssr1242 4 102255065 to 102255068 3 + TSS region transcription start site region 1242
Tssr38030 4 102255099 to 102255121 22 + TSS region transcription start site region 38030
Tssr38031 4 102255141 to 102255159 18 + TSS region transcription start site region 38031
Tssr38032 4 102255164 to 102255178 14 + TSS region transcription start site region 38032
Tssr38033 4 102306369 to 102306372 3 + TSS region transcription start site region 38033
Gm18219 4 102327355 to 102328016 661 + pseudogene predicted gene, 18219
Gm18220 4 102333046 to 102333717 671 + pseudogene predicted gene, 18220
Tssr1243 4 102368152 to 102368154 2 + TSS region transcription start site region 1243
Tssr38034 4 102421549 to 102421573 24 + TSS region transcription start site region 38034
Tssr38035 4 102430072 to 102430079 7 + TSS region transcription start site region 38035
Tssr38036 4 102467054 to 102467055 1 + TSS region transcription start site region 38036
Cpgi14507 4 102494247 to 102494487 240 CpG island CpG island 14507
Tssr1244 4 102507098 to 102507102 4 + TSS region transcription start site region 1244
Tssr38037 4 102511132 to 102511137 5 + TSS region transcription start site region 38037
Tssr38038 4 102511181 to 102511227 46 + TSS region transcription start site region 38038
Tssr38039 4 102568867 to 102568874 7 + TSS region transcription start site region 38039
Tssr42563 4 102569096 to 102569103 7 - TSS region transcription start site region 42563
Tssr42564 4 102569108 to 102569136 28 - TSS region transcription start site region 42564
Tssr42565 4 102569151 to 102569158 7 - TSS region transcription start site region 42565
Tssr38040 4 102570065 to 102570124 59 + TSS region transcription start site region 38040
Tssr38041 4 102570134 to 102570150 16 + TSS region transcription start site region 38041
Tssr38042 4 102570183 to 102570194 11 + TSS region transcription start site region 38042
Tssr38043 4 102570394 to 102570401 7 + TSS region transcription start site region 38043
Tssr38044 4 102570438 to 102570449 11 + TSS region transcription start site region 38044
Tssr38045 4 102570454 to 102570473 19 + TSS region transcription start site region 38045
Tssr38046 4 102570497 to 102570507 10 + TSS region transcription start site region 38046
Tssr38047 4 102570519 to 102570544 25 + TSS region transcription start site region 38047
Tssr38048 4 102570555 to 102570568 13 + TSS region transcription start site region 38048
Tssr38049 4 102570586 to 102570618 32 + TSS region transcription start site region 38049
Cpgi14508 4 102570623 to 102571054 431 CpG island CpG island 14508
Tssr38050 4 102570624 to 102570644 20 + TSS region transcription start site region 38050
Tssr38051 4 102570663 to 102570679 16 + TSS region transcription start site region 38051
Cd4vts1 4 102571641 to 102571840 199 QTL CD4 virgin T cell subset 1
Lnopy1 4 102571641 to 102571840 199 QTL lens opacity 1
D4Mit155 4 102571641 to 102571840 199 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 155
Tssr42566 4 102572162 to 102572176 14 - TSS region transcription start site region 42566
Tssr42567 4 102572183 to 102572194 11 - TSS region transcription start site region 42567
Tssr42568 4 102572207 to 102572226 19 - TSS region transcription start site region 42568
Tssr38052 4 102572364 to 102572377 13 + TSS region transcription start site region 38052
Tssr38053 4 102572817 to 102572838 21 + TSS region transcription start site region 38053
Tssr38054 4 102581092 to 102581120 28 + TSS region transcription start site region 38054
Tssr38055 4 102586061 to 102586064 3 + TSS region transcription start site region 38055
Tssr38056 4 102589687 to 102589716 29 + TSS region transcription start site region 38056
Tssr38057 4 102593714 to 102593718 4 + TSS region transcription start site region 38057
Tssr38058 4 102596111 to 102596120 9 + TSS region transcription start site region 38058
Tssr38059 4 102603520 to 102603549 29 + TSS region transcription start site region 38059
Tssr38060 4 102605429 to 102605441 12 + TSS region transcription start site region 38060
Tssr38061 4 102605739 to 102605783 44 + TSS region transcription start site region 38061
Tssr38062 4 102624951 to 102624969 18 + TSS region transcription start site region 38062
Tssr38063 4 102625147 to 102625162 15 + TSS region transcription start site region 38063
Tssr38064 4 102625197 to 102625208 11 + TSS region transcription start site region 38064
Tssr38065 4 102625330 to 102625342 12 + TSS region transcription start site region 38065
Tssr38066 4 102625420 to 102625459 39 + TSS region transcription start site region 38066
D4Mit359 4 102642790 to 102642903 113 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-359
Tssr38067 4 102698285 to 102698291 6 + TSS region transcription start site region 38067
Gm24869 4 102736812 to 102736939 127 + snoRNA gene predicted gene, 24869
Tssr38068 4 102741287 to 102741298 11 + TSS region transcription start site region 38068
Cpgi14509 4 102759103 to 102759565 462 CpG island CpG island 14509
Sgip1 4 102759162 to 102977426 218264 + protein coding gene SH3-domain GRB2-like (endophilin) interacting protein 1
Cpgi14510 4 102760044 to 102760486 442 CpG island CpG island 14510
Tssr38069 4 102760164 to 102760184 20 + TSS region transcription start site region 38069
Tssr38070 4 102760271 to 102760278 7 + TSS region transcription start site region 38070
Tssr38071 4 102760294 to 102760375 81 + TSS region transcription start site region 38071
Tssr38072 4 102825448 to 102825451 3 + TSS region transcription start site region 38072
Tssr38073 4 102833677 to 102833679 2 + TSS region transcription start site region 38073
Tssr42569 4 102859352 to 102859392 40 - TSS region transcription start site region 42569
Tssr42570 4 102921771 to 102921780 9 - TSS region transcription start site region 42570