Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:98295675-98607126

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmgcs2 3 98280435 to 98310738 30303 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
Tssr30838 3 98299108 to 98299131 23 + TSS region transcription start site region 30838
Tssr30839 3 98299171 to 98299178 7 + TSS region transcription start site region 30839
Tssr30840 3 98299206 to 98299226 20 + TSS region transcription start site region 30840
Tssr30841 3 98302609 to 98302637 28 + TSS region transcription start site region 30841
Tssr30842 3 98309023 to 98309042 19 + TSS region transcription start site region 30842
Tssr30843 3 98309088 to 98309099 11 + TSS region transcription start site region 30843
Tssr30844 3 98309155 to 98309169 14 + TSS region transcription start site region 30844
Tssr30845 3 98310024 to 98310046 22 + TSS region transcription start site region 30845
Phgdh 3 98313171 to 98339969 26798 - protein coding gene 3-phosphoglycerate dehydrogenase
Tssr34694 3 98314999 to 98315003 4 - TSS region transcription start site region 34694
Tssr34695 3 98319033 to 98319036 3 - TSS region transcription start site region 34695
Tssr34696 3 98335652 to 98335656 4 - TSS region transcription start site region 34696
Cpgi13603 3 98338807 to 98339703 896 CpG island CpG island 13603
Tssr34697 3 98339921 to 98339945 24 - TSS region transcription start site region 34697
Gm31420 3 98351513 to 98354968 3455 + lncRNA gene predicted gene, 31420
Tssr977 3 98352168 to 98352173 5 - TSS region transcription start site region 977
Tssr34698 3 98352176 to 98352184 8 - TSS region transcription start site region 34698
Zfp697 3 98381339 to 98431951 50612 + protein coding gene zinc finger protein 697
Cpgi13604 3 98382159 to 98383226 1067 CpG island CpG island 13604
Tssr34699 3 98382379 to 98382421 42 - TSS region transcription start site region 34699
Tssr30846 3 98382438 to 98382520 82 + TSS region transcription start site region 30846
Tssr30847 3 98382538 to 98382553 15 + TSS region transcription start site region 30847
Cpgi13605 3 98427179 to 98428737 1558 CpG island CpG island 13605
Tssr30848 3 98427772 to 98427793 21 + TSS region transcription start site region 30848
Gm4450 3 98445675 to 98457126 11451 - protein coding gene predicted gene 4450
Gm43190 3 98447198 to 98448976 1778 - sense intronic lncRNA gene predicted gene 43190
Gm19210 3 98469491 to 98473206 3715 - pseudogene predicted gene, 19210
Hsd3b4 3 98499071 to 98510514 11443 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
Gm19211 3 98522948 to 98526683 3735 - pseudogene predicted gene, 19211
Gm10681 3 98552542 to 98564050 11508 - protein coding gene predicted gene 10681
Gm5853 3 98579767 to 98580398 631 - pseudogene predicted gene 5853
Tssr34700 3 98580550 to 98580555 5 - TSS region transcription start site region 34700
Gm9678 3 98581153 to 98588290 7137 - pseudogene predicted gene 9678
Tssr978 3 98592431 to 98592432 1 + TSS region transcription start site region 978
Tssr30849 3 98599619 to 98599628 9 + TSS region transcription start site region 30849
Tssr30850 3 98600886 to 98600899 13 + TSS region transcription start site region 30850