Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96295428-96485676

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TGccc2 3 96311254 to 96311324 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon CCC)
n-TNgtt4 3 96322074 to 96322147 73 + tRNA gene nuclear encoded tRNA asparagine 4 (anticodon GTT)
Gm24830 3 96328425 to 96328590 165 + snRNA gene predicted gene, 24830
n-TVcac10 3 96332740 to 96332812 72 + tRNA gene nuclear encoded tRNA valine 10 (anticodon CAC)
Cpgi13552 3 96333063 to 96333352 289 CpG island CpG island 13552
Cpgi13553 3 96334014 to 96334756 742 CpG island CpG island 13553
n-TNgtt5 3 96334615 to 96334688 73 - tRNA gene nuclear encoded tRNA asparagine 5 (anticodon GTT)
n-TNgtt1 3 96334971 to 96335044 73 + tRNA gene nuclear encoded tRNA asparagine 1 (anticodon GTT)
n-TQctg5 3 96341156 to 96341227 71 - tRNA gene nuclear encoded tRNA glutamine 5 (anticodon CTG)
Cpgi13554 3 96343500 to 96343780 280 CpG island CpG island 13554
Platr30 3 96345287 to 96358480 13193 + lincRNA gene pluripotency associated transcript 30
n-TEttc3 3 96346675 to 96346746 71 + tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
Gm26553 3 96349587 to 96357151 7564 - lincRNA gene predicted gene, 26553
n-TGccc5 3 96351167 to 96351237 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon CCC)
Rnu1b1 3 96359953 to 96360117 164 - snRNA gene U1b1 small nuclear RNA
Rnu1b2 3 96374021 to 96374185 164 + snRNA gene U1b2 small nuclear RNA
Gm17575 3 96375646 to 96388864 13218 - lincRNA gene predicted gene, 17575
Gm26689 3 96376976 to 96384563 7587 + lincRNA gene predicted gene, 26689
n-TGccc1 3 96382911 to 96382981 70 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon CCC)
n-TEttc2 3 96387405 to 96387476 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
Cpgi13555 3 96390428 to 96390676 248 CpG island CpG island 13555
n-TQctg4 3 96399059 to 96399130 71 - tRNA gene nuclear encoded tRNA glutamine 4 (anticodon CTG)
4930477E14Rik 3 96401150 to 96402014 864 - lincRNA gene RIKEN cDNA 4930477E14 gene
Cpgi13556 3 96401679 to 96402441 762 CpG island CpG island 13556
Tssr34622 3 96401995 to 96402005 10 - TSS region transcription start site region 34622
Tssr34623 3 96402010 to 96402017 7 - TSS region transcription start site region 34623
Tssr30713 3 96402096 to 96402110 14 + TSS region transcription start site region 30713
Tssr30714 3 96402118 to 96402121 3 + TSS region transcription start site region 30714
Tssr30715 3 96402124 to 96402136 12 + TSS region transcription start site region 30715
n-TNgtt10 3 96402218 to 96402291 73 + tRNA gene nuclear encoded tRNA asparagine 10 (anticodon GTT)
Gm26654 3 96402480 to 96402952 472 + lincRNA gene predicted gene, 26654
Cpgi13557 3 96404381 to 96404811 430 CpG island CpG island 13557
Pafah1b1-ps1 3 96407517 to 96409059 1542 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
Cpgi13558 3 96409327 to 96410262 935 CpG island CpG island 13558
n-THgtg6 3 96410069 to 96410140 71 + tRNA gene nuclear encoded tRNA histidine 6 (anticodon GTG)
Gm21960 3 96412910 to 96413361 451 - pseudogene predicted gene, 21960
Cpgi13559 3 96414163 to 96414951 788 CpG island CpG island 13559
Terc 3 96414437 to 96414833 396 - telomerase RNA gene telomerase RNA component
Tssr34624 3 96414825 to 96414839 14 - TSS region transcription start site region 34624
Tssr34625 3 96417732 to 96417759 27 - TSS region transcription start site region 34625
Gm24136 3 96422733 to 96422897 164 + snRNA gene predicted gene, 24136
n-TGccc6 3 96424033 to 96424103 70 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon CCC)
n-TKctt15 3 96428235 to 96428307 72 + tRNA gene nuclear encoded tRNA lysine 15 (anticodon CTT)
BC107364 3 96433788 to 96452306 18518 - protein coding gene cDNA sequence BC107364
Cpgi13560 3 96435651 to 96436195 544 CpG island CpG island 13560
n-THgtg2 3 96435972 to 96436043 71 + tRNA gene nuclear encoded tRNA histidine 2 (anticodon GTG)
Gm26232 3 96450446 to 96450611 165 + snRNA gene predicted gene, 26232
n-TNgtt11 3 96451425 to 96451498 73 + tRNA gene nuclear encoded tRNA asparagine 11 (anticodon GTT)
n-THgtg7 3 96452495 to 96452566 71 + tRNA gene nuclear encoded tRNA histidine 7 (anticodon GTG)
Gm9207 3 96454835 to 96455949 1114 - pseudogene predicted gene 9207
n-THgtg9 3 96458070 to 96458141 71 - tRNA gene nuclear encoded tRNA histidine 9 (anticodon GTG)
Gm40099 3 96458995 to 96460336 1341 - lncRNA gene predicted gene, 40099
n-TNgtt13 3 96459138 to 96459211 73 - tRNA gene nuclear encoded tRNA asparagine 13 (anticodon GTT)
Rnu1b6 3 96460024 to 96460189 165 - snRNA gene U1b6 small nuclear RNA
Gm10685 3 96460186 to 96466925 6739 + lincRNA gene predicted gene 10685
Cpgi13561 3 96463902 to 96464297 395 CpG island CpG island 13561
n-THgtg1 3 96463972 to 96464043 71 - tRNA gene nuclear encoded tRNA histidine 1 (anticodon GTG)
Gm43534 3 96464072 to 96466924 2852 - unclassified gene predicted gene 43534
Cpgi13562 3 96474833 to 96475589 756 CpG island CpG island 13562
n-TQctg3 3 96479391 to 96479462 71 + tRNA gene nuclear encoded tRNA glutamine 3 (anticodon CTG)
Gm28001 3 96485161 to 96485277 116 + rRNA gene predicted gene, 28001