Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95286461-95502841

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mindy1 3 95282503 to 95296166 13663 + protein coding gene MINDY lysine 48 deubiquitinase 1
Tssr30535 3 95286738 to 95286782 44 + TSS region transcription start site region 30535
Tssr30536 3 95287640 to 95287654 14 + TSS region transcription start site region 30536
Tssr34466 3 95293676 to 95293721 45 - TSS region transcription start site region 34466
Anxa9 3 95296096 to 95307176 11080 - protein coding gene annexin A9
Tssr34467 3 95306794 to 95306810 16 - TSS region transcription start site region 34467
6330562C20Rik 3 95307076 to 95315127 8051 - antisense lncRNA gene RIKEN cDNA 6330562C20 gene
Tssr34468 3 95307132 to 95307181 49 - TSS region transcription start site region 34468
Tssr34469 3 95307186 to 95307202 16 - TSS region transcription start site region 34469
Tssr34470 3 95307449 to 95307459 10 - TSS region transcription start site region 34470
Cpgi13508 3 95314766 to 95315836 1070 CpG island CpG island 13508
Cers2 3 95314805 to 95323599 8794 + protein coding gene ceramide synthase 2
Tssr30537 3 95314832 to 95314866 34 + TSS region transcription start site region 30537
Tssr34471 3 95315086 to 95315103 17 - TSS region transcription start site region 34471
Tssr34472 3 95315152 to 95315217 65 - TSS region transcription start site region 34472
Tssr30538 3 95315240 to 95315273 33 + TSS region transcription start site region 30538
Tssr30539 3 95315282 to 95315302 20 + TSS region transcription start site region 30539
Tssr34473 3 95315733 to 95315759 26 - TSS region transcription start site region 34473
Tssr30540 3 95318782 to 95318793 11 + TSS region transcription start site region 30540
Tssr30541 3 95318801 to 95318819 18 + TSS region transcription start site region 30541
Tssr30542 3 95318824 to 95318870 46 + TSS region transcription start site region 30542
Tssr30543 3 95319968 to 95319977 9 + TSS region transcription start site region 30543
Tssr30544 3 95320147 to 95320165 18 + TSS region transcription start site region 30544
Tssr30545 3 95320167 to 95320203 36 + TSS region transcription start site region 30545
Tssr30546 3 95320470 to 95320493 23 + TSS region transcription start site region 30546
Tssr30547 3 95320992 to 95321014 22 + TSS region transcription start site region 30547
Setdb1 3 95323525 to 95357202 33677 - protein coding gene SET domain, bifurcated 1
Tssr34474 3 95331686 to 95331690 4 - TSS region transcription start site region 34474
Tssr34475 3 95339969 to 95339990 21 - TSS region transcription start site region 34475
Gm42578 3 95352784 to 95352977 193 + pseudogene predicted gene 42578
Gm37500 3 95356137 to 95357514 1377 + protein coding gene predicted gene, 37500
Cpgi13509 3 95356669 to 95356850 181 CpG island CpG island 13509
Cpgi13510 3 95357184 to 95357374 190 CpG island CpG island 13510
Tssr34476 3 95357186 to 95357211 25 - TSS region transcription start site region 34476
Tssr34477 3 95357217 to 95357244 27 - TSS region transcription start site region 34477
4930558C23Rik 3 95386461 to 95402841 16380 - lncRNA gene RIKEN cDNA 4930558C23 gene
Tssr34478 3 95402775 to 95402780 5 - TSS region transcription start site region 34478
Tssr34479 3 95402781 to 95402786 5 - TSS region transcription start site region 34479
Tssr34480 3 95402795 to 95402851 56 - TSS region transcription start site region 34480
Gm5070 3 95410346 to 95411207 861 - pseudogene predicted gene 5070
Cpgi13511 3 95411089 to 95411261 172 CpG island CpG island 13511
Gm9173 3 95415026 to 95415425 399 - pseudogene predicted gene 9173
Tssr30548 3 95427575 to 95427588 13 + TSS region transcription start site region 30548
Gm4349 3 95427671 to 95431087 3416 + pseudogene predicted gene 4349
Cpgi13512 3 95427903 to 95428086 183 CpG island CpG island 13512
Cpgi13513 3 95434274 to 95434906 632 CpG island CpG island 13513
Tssr30549 3 95434386 to 95434421 35 + TSS region transcription start site region 30549
Arnt 3 95434388 to 95497240 62852 + protein coding gene aryl hydrocarbon receptor nuclear translocator
Tssr30550 3 95434510 to 95434533 23 + TSS region transcription start site region 30550
Tssr30551 3 95443458 to 95443463 5 + TSS region transcription start site region 30551
Tssr30552 3 95454372 to 95454373 1 + TSS region transcription start site region 30552
Gm42672 3 95461191 to 95461542 351 + pseudogene predicted gene 42672
D3Umi11 3 95479715 to 95479844 129 DNA segment DNA segment, Chr 3, University of Michigan 11
Tssr30553 3 95481233 to 95481254 21 + TSS region transcription start site region 30553
Tssr30554 3 95496733 to 95496735 2 + TSS region transcription start site region 30554
Tssr30555 3 95499217 to 95499220 3 + TSS region transcription start site region 30555
Tssr30556 3 95499223 to 95499229 6 + TSS region transcription start site region 30556
Tssr30557 3 95499256 to 95499265 9 + TSS region transcription start site region 30557
Ctsk 3 95499256 to 95509362 10106 + protein coding gene cathepsin K
Tssr30558 3 95499273 to 95499289 16 + TSS region transcription start site region 30558
Tssr30559 3 95499792 to 95499811 19 + TSS region transcription start site region 30559
Tssr30560 3 95499856 to 95499868 12 + TSS region transcription start site region 30560
Tssr30561 3 95499891 to 95499896 5 + TSS region transcription start site region 30561
Tssr30562 3 95502523 to 95502551 28 + TSS region transcription start site region 30562