Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90611034-90781041

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
S100a5 3 90608523 to 90611780 3257 + protein coding gene S100 calcium binding protein A5
Tssr30242 3 90612272 to 90612296 24 + TSS region transcription start site region 30242
Tssr30243 3 90612832 to 90612865 33 + TSS region transcription start site region 30243
Tssr30244 3 90612869 to 90612881 12 + TSS region transcription start site region 30244
S100a6 3 90612894 to 90614414 1520 + protein coding gene S100 calcium binding protein A6 (calcyclin)
Tssr30245 3 90612900 to 90612979 79 + TSS region transcription start site region 30245
Cpgi13468 3 90612986 to 90613366 380 CpG island CpG island 13468
Tssr30246 3 90613146 to 90613157 11 + TSS region transcription start site region 30246
Tssr30247 3 90613176 to 90613192 16 + TSS region transcription start site region 30247
Tssr30248 3 90613282 to 90613292 10 + TSS region transcription start site region 30248
Tssr30249 3 90613519 to 90613536 17 + TSS region transcription start site region 30249
Tssr30250 3 90613728 to 90613769 41 + TSS region transcription start site region 30250
Tssr30251 3 90613775 to 90613853 78 + TSS region transcription start site region 30251
Tssr30252 3 90614346 to 90614357 11 + TSS region transcription start site region 30252
Tssr30253 3 90614370 to 90614383 13 + TSS region transcription start site region 30253
Tssr34246 3 90614411 to 90614415 4 - TSS region transcription start site region 34246
Tssr30254 3 90623671 to 90623689 18 + TSS region transcription start site region 30254
Gm19739 3 90651714 to 90651866 152 - pseudogene predicted gene, 19739
S100a7a 3 90654017 to 90658669 4652 + protein coding gene S100 calcium binding protein A7A
Tssr30255 3 90654082 to 90654093 11 + TSS region transcription start site region 30255
Tssr30256 3 90654103 to 90654106 3 + TSS region transcription start site region 30256
Tssr30257 3 90654109 to 90654123 14 + TSS region transcription start site region 30257
Tssr30258 3 90654136 to 90654139 3 + TSS region transcription start site region 30258
Tssr30259 3 90654140 to 90654149 9 + TSS region transcription start site region 30259
Tssr30260 3 90654162 to 90654182 20 + TSS region transcription start site region 30260
Tssr30261 3 90654191 to 90654205 14 + TSS region transcription start site region 30261
Tssr30262 3 90654223 to 90654237 14 + TSS region transcription start site region 30262
Tssr30263 3 90654253 to 90654279 26 + TSS region transcription start site region 30263
Tssr34247 3 90659423 to 90659436 13 - TSS region transcription start site region 34247
Tssr34248 3 90659441 to 90659448 7 - TSS region transcription start site region 34248
Tssr30264 3 90659651 to 90659660 9 + TSS region transcription start site region 30264
Tssr946 3 90659950 to 90659990 40 + TSS region transcription start site region 946
Tssr30265 3 90669063 to 90669076 13 + TSS region transcription start site region 30265
S100a8 3 90669071 to 90670034 963 + protein coding gene S100 calcium binding protein A8 (calgranulin A)
Tssr30266 3 90669533 to 90669574 41 + TSS region transcription start site region 30266
Tssr30267 3 90669929 to 90669940 11 + TSS region transcription start site region 30267
Tssr947 3 90669953 to 90669966 13 - TSS region transcription start site region 947
Tssr34249 3 90670027 to 90670033 6 - TSS region transcription start site region 34249
Tssr34250 3 90678726 to 90678738 12 - TSS region transcription start site region 34250
Tssr34251 3 90682754 to 90682763 9 - TSS region transcription start site region 34251
Tssr948 3 90687108 to 90687115 7 + TSS region transcription start site region 948
Tssr30268 3 90692631 to 90692638 7 + TSS region transcription start site region 30268
S100a9 3 90692632 to 90695721 3089 - protein coding gene S100 calcium binding protein A9 (calgranulin B)
Tssr34252 3 90692717 to 90692733 16 - TSS region transcription start site region 34252
Tssr30269 3 90692717 to 90692749 32 + TSS region transcription start site region 30269
Tssr949 3 90692777 to 90692790 13 + TSS region transcription start site region 949
Tssr34253 3 90692835 to 90692865 30 - TSS region transcription start site region 34253
Tssr950 3 90692875 to 90692921 46 - TSS region transcription start site region 950
Tssr30270 3 90692877 to 90692897 20 + TSS region transcription start site region 30270
Tssr951 3 90694171 to 90694211 40 - TSS region transcription start site region 951
Tssr34254 3 90694954 to 90694973 19 - TSS region transcription start site region 34254
Tssr34255 3 90695049 to 90695067 18 - TSS region transcription start site region 34255
Tssr952 3 90695122 to 90695154 32 + TSS region transcription start site region 952
Tssr34256 3 90695124 to 90695134 10 - TSS region transcription start site region 34256
Tssr953 3 90695168 to 90695173 5 - TSS region transcription start site region 953
Tssr34257 3 90695184 to 90695243 59 - TSS region transcription start site region 34257
Tssr34258 3 90695245 to 90695325 80 - TSS region transcription start site region 34258
Tssr34259 3 90695372 to 90695381 9 - TSS region transcription start site region 34259
Tssr34260 3 90695684 to 90695697 13 - TSS region transcription start site region 34260
Tssr34261 3 90695706 to 90695721 15 - TSS region transcription start site region 34261
Tssr34262 3 90695756 to 90695764 8 - TSS region transcription start site region 34262
Tssr34263 3 90695788 to 90695796 8 - TSS region transcription start site region 34263
Tssr954 3 90695993 to 90696000 7 + TSS region transcription start site region 954
Tssr30271 3 90696034 to 90696041 7 + TSS region transcription start site region 30271
Gm42579 3 90708881 to 90709614 733 - pseudogene predicted gene 42579
Gm5284 3 90722611 to 90723513 902 - pseudogene predicted gene 5284
Tssr30272 3 90725887 to 90725909 22 + TSS region transcription start site region 30272
Pglyrp4 3 90726906 to 90741517 14611 + protein coding gene peptidoglycan recognition protein 4
Gm35013 3 90758732 to 90759563 831 + pseudogene predicted gene, 35013
Gm5104 3 90759367 to 90761313 1946 + pseudogene predicted gene 5104
Gm5849 3 90775946 to 90777876 1930 - protein coding gene predicted gene 5849