Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90538176-90688192

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
S100a16 3 90537257 to 90543151 5894 + protein coding gene S100 calcium binding protein A16
Tssr30222 3 90539645 to 90539660 15 + TSS region transcription start site region 30222
Tssr30223 3 90539675 to 90539691 16 + TSS region transcription start site region 30223
Tssr30224 3 90541155 to 90541173 18 + TSS region transcription start site region 30224
Tssr30225 3 90541177 to 90541186 9 + TSS region transcription start site region 30225
Tssr30226 3 90541189 to 90541213 24 + TSS region transcription start site region 30226
Tssr30227 3 90541217 to 90541241 24 + TSS region transcription start site region 30227
Tssr30228 3 90541258 to 90541276 18 + TSS region transcription start site region 30228
Gm24593 3 90548619 to 90548724 105 + snRNA gene predicted gene, 24593
Tssr30229 3 90560317 to 90560332 15 + TSS region transcription start site region 30229
Gm23464 3 90560556 to 90560702 146 - snRNA gene predicted gene, 23464
S100a3 3 90560578 to 90602702 42124 + protein coding gene S100 calcium binding protein A3
Cpgi13467 3 90586945 to 90587222 277 CpG island CpG island 13467
Tssr30230 3 90587255 to 90587271 16 + TSS region transcription start site region 30230
Tssr945 3 90587275 to 90587290 15 + TSS region transcription start site region 945
Tssr30231 3 90588536 to 90588550 14 + TSS region transcription start site region 30231
Tssr30232 3 90589707 to 90589717 10 + TSS region transcription start site region 30232
S100a2 3 90590247 to 90591508 1261 + protein coding gene S100 calcium binding protein A2
Tssr30233 3 90600203 to 90600219 16 + TSS region transcription start site region 30233
Tssr30234 3 90600237 to 90600247 10 + TSS region transcription start site region 30234
Tssr30235 3 90601773 to 90601809 36 + TSS region transcription start site region 30235
Gm42674 3 90601904 to 90605885 3981 + protein coding gene predicted gene 42674
D3Mit28.1 3 90603728 to 90603900 172 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.1
Tssr30236 3 90603767 to 90603771 4 + TSS region transcription start site region 30236
S100a4 3 90603771 to 90606045 2274 + protein coding gene S100 calcium binding protein A4
D3Mit28 3 90603910 to 90604057 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28
D3Dcr15 3 90603921 to 90604032 111 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 15
D3Mit28.2 3 90604013 to 90604162 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.2
Tssr30237 3 90604641 to 90604660 19 + TSS region transcription start site region 30237
Tssr30238 3 90605734 to 90605784 50 + TSS region transcription start site region 30238
Tssr30239 3 90605941 to 90605974 33 + TSS region transcription start site region 30239
Tssr30240 3 90608497 to 90608501 4 + TSS region transcription start site region 30240
S100a5 3 90608523 to 90611780 3257 + protein coding gene S100 calcium binding protein A5
Tssr30241 3 90609379 to 90609395 16 + TSS region transcription start site region 30241
D3Nds7 3 90609578 to 90609764 186 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr30242 3 90612272 to 90612296 24 + TSS region transcription start site region 30242
Tssr30243 3 90612832 to 90612865 33 + TSS region transcription start site region 30243
Tssr30244 3 90612869 to 90612881 12 + TSS region transcription start site region 30244
S100a6 3 90612894 to 90614414 1520 + protein coding gene S100 calcium binding protein A6 (calcyclin)
Tssr30245 3 90612900 to 90612979 79 + TSS region transcription start site region 30245
Cpgi13468 3 90612986 to 90613366 380 CpG island CpG island 13468
Tssr30246 3 90613146 to 90613157 11 + TSS region transcription start site region 30246
Tssr30247 3 90613176 to 90613192 16 + TSS region transcription start site region 30247
Tssr30248 3 90613282 to 90613292 10 + TSS region transcription start site region 30248
Tssr30249 3 90613519 to 90613536 17 + TSS region transcription start site region 30249
Tssr30250 3 90613728 to 90613769 41 + TSS region transcription start site region 30250
Tssr30251 3 90613775 to 90613853 78 + TSS region transcription start site region 30251
Tssr30252 3 90614346 to 90614357 11 + TSS region transcription start site region 30252
Tssr30253 3 90614370 to 90614383 13 + TSS region transcription start site region 30253
Tssr34246 3 90614411 to 90614415 4 - TSS region transcription start site region 34246
Tssr30254 3 90623671 to 90623689 18 + TSS region transcription start site region 30254
Gm19739 3 90651714 to 90651866 152 - pseudogene predicted gene, 19739
S100a7a 3 90654017 to 90658669 4652 + protein coding gene S100 calcium binding protein A7A
Tssr30255 3 90654082 to 90654093 11 + TSS region transcription start site region 30255
Tssr30256 3 90654103 to 90654106 3 + TSS region transcription start site region 30256
Tssr30257 3 90654109 to 90654123 14 + TSS region transcription start site region 30257
Tssr30258 3 90654136 to 90654139 3 + TSS region transcription start site region 30258
Tssr30259 3 90654140 to 90654149 9 + TSS region transcription start site region 30259
Tssr30260 3 90654162 to 90654182 20 + TSS region transcription start site region 30260
Tssr30261 3 90654191 to 90654205 14 + TSS region transcription start site region 30261
Tssr30262 3 90654223 to 90654237 14 + TSS region transcription start site region 30262
Tssr30263 3 90654253 to 90654279 26 + TSS region transcription start site region 30263
Tssr34247 3 90659423 to 90659436 13 - TSS region transcription start site region 34247
Tssr34248 3 90659441 to 90659448 7 - TSS region transcription start site region 34248
Tssr30264 3 90659651 to 90659660 9 + TSS region transcription start site region 30264
Tssr946 3 90659950 to 90659990 40 + TSS region transcription start site region 946
Tssr30265 3 90669063 to 90669076 13 + TSS region transcription start site region 30265
S100a8 3 90669071 to 90670034 963 + protein coding gene S100 calcium binding protein A8 (calgranulin A)
Tssr30266 3 90669533 to 90669574 41 + TSS region transcription start site region 30266
Tssr30267 3 90669929 to 90669940 11 + TSS region transcription start site region 30267
Tssr947 3 90669953 to 90669966 13 - TSS region transcription start site region 947
Tssr34249 3 90670027 to 90670033 6 - TSS region transcription start site region 34249
Tssr34250 3 90678726 to 90678738 12 - TSS region transcription start site region 34250
Tssr34251 3 90682754 to 90682763 9 - TSS region transcription start site region 34251
Tssr948 3 90687108 to 90687115 7 + TSS region transcription start site region 948
Rapop3 3 100556821 to 90603910 -9952911 QTL radiation-induced apoptosis 3