Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90253285-90403405

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Slc39a1 3 90248192 to 90253613 5421 + protein coding gene solute carrier family 39 (zinc transporter), member 1
Cpgi13455 3 90253949 to 90254836 887 CpG island CpG island 13455
Tssr34201 3 90254078 to 90254092 14 - TSS region transcription start site region 34201
Crtc2 3 90254163 to 90264125 9962 + protein coding gene CREB regulated transcription coactivator 2
Tssr30179 3 90254241 to 90254252 11 + TSS region transcription start site region 30179
Tssr30180 3 90254259 to 90254332 73 + TSS region transcription start site region 30180
Tssr30181 3 90254344 to 90254363 19 + TSS region transcription start site region 30181
Tssr30182 3 90260282 to 90260285 3 + TSS region transcription start site region 30182
Tssr30183 3 90260961 to 90260975 14 + TSS region transcription start site region 30183
Cpgi13456 3 90264920 to 90266195 1275 CpG island CpG island 13456
Tssr30184 3 90264967 to 90264988 21 + TSS region transcription start site region 30184
Dennd4b 3 90265185 to 90280669 15484 + protein coding gene DENN/MADD domain containing 4B
Tssr34202 3 90265508 to 90265575 67 - TSS region transcription start site region 34202
Tssr30185 3 90265919 to 90265938 19 + TSS region transcription start site region 30185
Tssr30186 3 90265955 to 90265967 12 + TSS region transcription start site region 30186
Tssr34203 3 90266393 to 90266397 4 - TSS region transcription start site region 34203
Tssr30187 3 90266492 to 90266501 9 + TSS region transcription start site region 30187
Tssr30188 3 90266507 to 90266566 59 + TSS region transcription start site region 30188
Mir7012 3 90270149 to 90270212 63 + miRNA gene microRNA 7012
Cpgi13457 3 90273760 to 90274202 442 CpG island CpG island 13457
8430422J01Rik 3 90289990 to 90290727 737 unclassified gene RIKEN cDNA 8430422J01 gene
4930537H20Rik 3 90292301 to 90293983 1682 - antisense lncRNA gene RIKEN cDNA 4930537H20 gene
Cpgi13458 3 90292725 to 90294108 1383 CpG island CpG island 13458
Tssr34204 3 90292776 to 90292782 6 - TSS region transcription start site region 34204
Tssr34205 3 90292865 to 90292876 11 - TSS region transcription start site region 34205
Tssr30189 3 90293163 to 90293253 90 + TSS region transcription start site region 30189
Gatad2b 3 90293285 to 90363405 70120 + protein coding gene GATA zinc finger domain containing 2B
Tssr30190 3 90293295 to 90293311 16 + TSS region transcription start site region 30190
Tssr30191 3 90293353 to 90293380 27 + TSS region transcription start site region 30191
Tssr30192 3 90294081 to 90294090 9 + TSS region transcription start site region 30192
Tssr30193 3 90294092 to 90294104 12 + TSS region transcription start site region 30193
Gm45477 3 90311518 to 90317015 5497 + unclassified gene predicted gene 45477
Gm45354 3 90335395 to 90337951 2556 + unclassified gene predicted gene 45354
Tssr30194 3 90357988 to 90358011 23 + TSS region transcription start site region 30194
Tssr30195 3 90359338 to 90359352 14 + TSS region transcription start site region 30195
Tssr30196 3 90359492 to 90359508 16 + TSS region transcription start site region 30196
Tssr30197 3 90359591 to 90359610 19 + TSS region transcription start site region 30197
Tssr30198 3 90359626 to 90359639 13 + TSS region transcription start site region 30198
D3Mit232 3 90359629 to 90359778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 232
Tssr30199 3 90363089 to 90363094 5 + TSS region transcription start site region 30199
Tssr30200 3 90363160 to 90363164 4 + TSS region transcription start site region 30200
Slc27a3 3 90385239 to 90389938 4699 - protein coding gene solute carrier family 27 (fatty acid transporter), member 3
Cpgi13459 3 90388737 to 90390342 1605 CpG island CpG island 13459
Tssr34206 3 90389281 to 90389319 38 - TSS region transcription start site region 34206
Tssr34207 3 90389849 to 90389862 13 - TSS region transcription start site region 34207
Tssr34208 3 90389884 to 90389924 40 - TSS region transcription start site region 34208
Tssr34209 3 90389936 to 90389958 22 - TSS region transcription start site region 34209
Tssr34210 3 90389963 to 90389976 13 - TSS region transcription start site region 34210
Ints3 3 90391388 to 90433622 42234 - protein coding gene integrator complex subunit 3