Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90001535-90251666

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubap2l 3 90000140 to 90052628 52488 - protein coding gene ubiquitin-associated protein 2-like
Tssr34179 3 90002265 to 90002290 25 - TSS region transcription start site region 34179
Tssr34180 3 90009288 to 90009306 18 - TSS region transcription start site region 34180
Gm24608 3 90010595 to 90010730 135 - snoRNA gene predicted gene, 24608
Mir7669 3 90011153 to 90011210 57 - miRNA gene microRNA 7669
Tssr34181 3 90014427 to 90014432 5 - TSS region transcription start site region 34181
Tssr34182 3 90016819 to 90016831 12 - TSS region transcription start site region 34182
Tssr34183 3 90017609 to 90017613 4 - TSS region transcription start site region 34183
Tssr34184 3 90018442 to 90018480 38 - TSS region transcription start site region 34184
Tssr34185 3 90019197 to 90019212 15 - TSS region transcription start site region 34185
Tssr34186 3 90019232 to 90019244 12 - TSS region transcription start site region 34186
Tssr34187 3 90020936 to 90020965 29 - TSS region transcription start site region 34187
Tssr34188 3 90045035 to 90045044 9 - TSS region transcription start site region 34188
Tssr30147 3 90051537 to 90051565 28 + TSS region transcription start site region 30147
Tssr30148 3 90051630 to 90051636 6 + TSS region transcription start site region 30148
4933434E20Rik 3 90051636 to 90063341 11705 + protein coding gene RIKEN cDNA 4933434E20 gene
Cpgi13449 3 90051787 to 90053417 1630 CpG island CpG island 13449
Tssr34189 3 90052432 to 90052459 27 - TSS region transcription start site region 34189
Tssr34190 3 90052463 to 90052521 58 - TSS region transcription start site region 34190
Tssr34191 3 90052608 to 90052627 19 - TSS region transcription start site region 34191
Tssr30149 3 90052824 to 90052857 33 + TSS region transcription start site region 30149
Tssr30150 3 90052921 to 90052936 15 + TSS region transcription start site region 30150
Gm16540 3 90057259 to 90058380 1121 + sense intronic lncRNA gene predicted gene 16540
Tssr30151 3 90062781 to 90062836 55 + TSS region transcription start site region 30151
1700094D03Rik 3 90062796 to 90068347 5551 + protein coding gene RIKEN cDNA 1700094D03 gene
Tssr30152 3 90068160 to 90068167 7 + TSS region transcription start site region 30152
Tssr30153 3 90069067 to 90069073 6 + TSS region transcription start site region 30153
Mir190b 3 90070020 to 90070099 79 + miRNA gene microRNA 190b
Tssr30154 3 90072641 to 90072657 16 + TSS region transcription start site region 30154
Tpm3 3 90072651 to 90100902 28251 + protein coding gene tropomyosin 3, gamma
Cpgi13450 3 90079272 to 90080569 1297 CpG island CpG island 13450
Tssr30155 3 90079524 to 90079537 13 + TSS region transcription start site region 30155
Tssr30156 3 90079546 to 90079565 19 + TSS region transcription start site region 30156
Tssr30157 3 90079619 to 90079664 45 + TSS region transcription start site region 30157
Tssr30158 3 90080485 to 90080498 13 + TSS region transcription start site region 30158
D3Ertd34e 3 90082358 to 90082579 221 DNA segment DNA segment, Chr 3, ERATO Doi 34, expressed
Tssr30159 3 90086342 to 90086353 11 + TSS region transcription start site region 30159
Tssr30160 3 90087415 to 90087439 24 + TSS region transcription start site region 30160
Tssr30161 3 90088093 to 90088097 4 + TSS region transcription start site region 30161
Tssr30162 3 90104128 to 90104143 15 + TSS region transcription start site region 30162
Nup210l 3 90104132 to 90212048 107916 + protein coding gene nucleoporin 210-like
Tssr30163 3 90104147 to 90104152 5 + TSS region transcription start site region 30163
Tssr30164 3 90104154 to 90104165 11 + TSS region transcription start site region 30164
Gm34865 3 90124651 to 90127116 2465 + lncRNA gene predicted gene, 34865
Gm23723 3 90126535 to 90126666 131 + snoRNA gene predicted gene, 23723
Gm43712 3 90126767 to 90127057 290 + pseudogene predicted gene 43712
Gm24185 3 90198682 to 90198786 104 + snRNA gene predicted gene, 24185
Rps27 3 90212667 to 90213648 981 - protein coding gene ribosomal protein S27
Cpgi13451 3 90213313 to 90213944 631 CpG island CpG island 13451
Tssr34192 3 90213577 to 90213630 53 - TSS region transcription start site region 34192
Tssr34193 3 90213636 to 90213670 34 - TSS region transcription start site region 34193
Rab13 3 90213715 to 90226387 12672 + protein coding gene RAB13, member RAS oncogene family
Tssr30165 3 90220747 to 90220773 26 + TSS region transcription start site region 30165
Tssr30166 3 90220783 to 90220830 47 + TSS region transcription start site region 30166
Tssr30167 3 90220856 to 90220867 11 + TSS region transcription start site region 30167
Tssr30168 3 90220871 to 90220877 6 + TSS region transcription start site region 30168
Tssr30169 3 90220881 to 90220897 16 + TSS region transcription start site region 30169
Tssr943 3 90231075 to 90231081 6 + TSS region transcription start site region 943
Cpgi13452 3 90231386 to 90232263 877 CpG island CpG island 13452
Tssr30170 3 90231588 to 90231663 75 + TSS region transcription start site region 30170
Jtb 3 90231597 to 90235838 4241 + protein coding gene jumping translocation breakpoint
Tssr30171 3 90231665 to 90231708 43 + TSS region transcription start site region 30171
Creb3l4 3 90237500 to 90243512 6012 - protein coding gene cAMP responsive element binding protein 3-like 4
Tssr34194 3 90238790 to 90238805 15 - TSS region transcription start site region 34194
Tssr34195 3 90238825 to 90238845 20 - TSS region transcription start site region 34195
Tssr34196 3 90242492 to 90242554 62 - TSS region transcription start site region 34196
Tssr34197 3 90242556 to 90242567 11 - TSS region transcription start site region 34197
Cpgi13453 3 90242744 to 90242907 163 CpG island CpG island 13453
Tssr34198 3 90243061 to 90243072 11 - TSS region transcription start site region 34198
Tssr34199 3 90243073 to 90243109 36 - TSS region transcription start site region 34199
Cpgi13454 3 90247889 to 90248552 663 CpG island CpG island 13454
Slc39a1 3 90248192 to 90253613 5421 + protein coding gene solute carrier family 39 (zinc transporter), member 1
Tssr30172 3 90248195 to 90248228 33 + TSS region transcription start site region 30172
Tssr30173 3 90248522 to 90248533 11 + TSS region transcription start site region 30173
Tssr34200 3 90248764 to 90248776 12 - TSS region transcription start site region 34200
Tssr30174 3 90248831 to 90248842 11 + TSS region transcription start site region 30174
Tssr30175 3 90248857 to 90248870 13 + TSS region transcription start site region 30175
Tssr30176 3 90248885 to 90248932 47 + TSS region transcription start site region 30176
Tssr30177 3 90248962 to 90248971 9 + TSS region transcription start site region 30177