Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89884481-90018332

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il6ra 3 89869324 to 89913196 43872 - protein coding gene interleukin 6 receptor, alpha
Gm46811 3 89872076 to 89890235 18159 + lncRNA gene predicted gene, 46811
Tssr34160 3 89891466 to 89891478 12 - TSS region transcription start site region 34160
Tssr34161 3 89904373 to 89904382 9 - TSS region transcription start site region 34161
Tssr34162 3 89904395 to 89904410 15 - TSS region transcription start site region 34162
Tssr34163 3 89904416 to 89904427 11 - TSS region transcription start site region 34163
Tssr34164 3 89904507 to 89904518 11 - TSS region transcription start site region 34164
Tssr30143 3 89911393 to 89911406 13 + TSS region transcription start site region 30143
Cpgi13445 3 89912618 to 89913519 901 CpG island CpG island 13445
Tssr30144 3 89912892 to 89912898 6 + TSS region transcription start site region 30144
Gm42809 3 89912916 to 89914053 1137 + antisense lncRNA gene predicted gene 42809
Tssr34165 3 89913102 to 89913111 9 - TSS region transcription start site region 34165
Tssr34166 3 89913144 to 89913172 28 - TSS region transcription start site region 34166
Tssr34167 3 89913186 to 89913202 16 - TSS region transcription start site region 34167
Atp8b2 3 89939481 to 89963332 23851 - protein coding gene ATPase, class I, type 8B, member 2
Tssr34168 3 89959118 to 89959130 12 - TSS region transcription start site region 34168
Tssr34169 3 89959146 to 89959156 10 - TSS region transcription start site region 34169
Cpgi13446 3 89960249 to 89960912 663 CpG island CpG island 13446
Tssr34170 3 89960540 to 89960557 17 - TSS region transcription start site region 34170
Tssr34171 3 89960562 to 89960617 55 - TSS region transcription start site region 34171
Cpgi13447 3 89962792 to 89963871 1079 CpG island CpG island 13447
Tssr34172 3 89963273 to 89963286 13 - TSS region transcription start site region 34172
Tssr34173 3 89963304 to 89963355 51 - TSS region transcription start site region 34173
Tssr30145 3 89963428 to 89963462 34 + TSS region transcription start site region 30145
Aqp10-ps 3 89964709 to 89968658 3949 - pseudogene aquaporin 10, pseudogene
Gm24046 3 89967999 to 89968163 164 - snRNA gene predicted gene, 24046
Hax1 3 89995446 to 89998716 3270 - protein coding gene HCLS1 associated X-1
Tssr34174 3 89998243 to 89998251 8 - TSS region transcription start site region 34174
Cpgi13448 3 89998518 to 89998881 363 CpG island CpG island 13448
Tssr34175 3 89998656 to 89998704 48 - TSS region transcription start site region 34175
Gm19710 3 89998760 to 90001325 2565 + lincRNA gene predicted gene, 19710
Ubap2l 3 90000140 to 90052628 52488 - protein coding gene ubiquitin-associated protein 2-like
Tssr34176 3 90000528 to 90000547 19 - TSS region transcription start site region 34176
Tssr34177 3 90000553 to 90000581 28 - TSS region transcription start site region 34177
Tssr34178 3 90000794 to 90000804 10 - TSS region transcription start site region 34178
Tssr30146 3 90000836 to 90000846 10 + TSS region transcription start site region 30146
Tssr34179 3 90002265 to 90002290 25 - TSS region transcription start site region 34179
Tssr34180 3 90009288 to 90009306 18 - TSS region transcription start site region 34180
Gm24608 3 90010595 to 90010730 135 - snoRNA gene predicted gene, 24608
Mir7669 3 90011153 to 90011210 57 - miRNA gene microRNA 7669
Tssr34181 3 90014427 to 90014432 5 - TSS region transcription start site region 34181
Tssr34182 3 90016819 to 90016831 12 - TSS region transcription start site region 34182
Tssr34183 3 90017609 to 90017613 4 - TSS region transcription start site region 34183