Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88165598-88265686

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mef2d 3 88142372 to 88172086 29714 + protein coding gene myocyte enhancer factor 2D
Tssr29912 3 88167572 to 88167588 16 + TSS region transcription start site region 29912
Tssr29913 3 88167594 to 88167654 60 + TSS region transcription start site region 29913
Tssr29914 3 88170324 to 88170336 12 + TSS region transcription start site region 29914
1700113A16Rik 3 88171560 to 88177785 6225 - antisense lncRNA gene RIKEN cDNA 1700113A16 gene
Cpgi13362 3 88177544 to 88178371 827 CpG island CpG island 13362
Tssr33991 3 88177671 to 88177783 112 - TSS region transcription start site region 33991
D3Mit74 3 88187246 to 88187394 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 74
AI849053 3 88199102 to 88204595 5493 - lincRNA gene expressed sequence AI849053
Tssr29915 3 88200255 to 88200269 14 + TSS region transcription start site region 29915
Tssr29916 3 88200270 to 88200279 9 + TSS region transcription start site region 29916
Tssr29917 3 88200285 to 88200318 33 + TSS region transcription start site region 29917
Cpgi13363 3 88200298 to 88201591 1293 CpG island CpG island 13363
Tssr29918 3 88200323 to 88200348 25 + TSS region transcription start site region 29918
Tssr29919 3 88200607 to 88200629 22 + TSS region transcription start site region 29919
AW047730 3 88200623 to 88203481 2858 + unclassified non-coding RNA gene expressed sequence AW047730
Tssr29920 3 88206525 to 88206537 12 + TSS region transcription start site region 29920
Tssr29921 3 88206786 to 88206824 38 + TSS region transcription start site region 29921
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
Tssr29922 3 88207100 to 88207135 35 + TSS region transcription start site region 29922
Cpgi13364 3 88207218 to 88207584 366 CpG island CpG island 13364
Tssr29923 3 88207255 to 88207305 50 + TSS region transcription start site region 29923
Tssr29924 3 88207308 to 88207328 20 + TSS region transcription start site region 29924
Tssr29925 3 88212739 to 88212771 32 + TSS region transcription start site region 29925
Cpgi13365 3 88214387 to 88216175 1788 CpG island CpG island 13365
Tssr29926 3 88214474 to 88214491 17 + TSS region transcription start site region 29926
Mir3093 3 88215171 to 88215257 86 + miRNA gene microRNA 3093
Gm25641 3 88215589 to 88215696 107 - miRNA gene predicted gene, 25641
Mir9-1 3 88215598 to 88215686 88 + miRNA gene microRNA 9-1
Tssr29927 3 88215672 to 88215680 8 + TSS region transcription start site region 29927
Tssr29928 3 88218241 to 88218246 5 + TSS region transcription start site region 29928
4931402H11Rik 3 88227410 to 88232335 4925 unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
Tssr29929 3 88227434 to 88227438 4 + TSS region transcription start site region 29929
Tssr29930 3 88228329 to 88228340 11 + TSS region transcription start site region 29930
Cpgi13366 3 88240735 to 88241875 1140 CpG island CpG island 13366
Rhbg 3 88242874 to 88254709 11835 - protein coding gene Rhesus blood group-associated B glycoprotein
Gm38392 3 88243380 to 88287210 43830 - protein coding gene predicted gene, 38392
Cpgi13367 3 88245854 to 88246065 211 CpG island CpG island 13367
Cpgi13368 3 88254322 to 88254898 576 CpG island CpG island 13368
Tssr33992 3 88254675 to 88254689 14 - TSS region transcription start site region 33992
Tssr33993 3 88254706 to 88254722 16 - TSS region transcription start site region 33993