Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:87952681-91372716

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1067 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5a 3 87263147 to 89232787 1969640 QTL collagen induced arthritis QTL 5a
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Crabp2 3 87948693 to 87953372 4679 + protein coding gene cellular retinoic acid binding protein II
Tssr29876 3 87953046 to 87953056 10 + TSS region transcription start site region 29876
Tssr29877 3 87953062 to 87953071 9 + TSS region transcription start site region 29877
Tssr29878 3 87953085 to 87953097 12 + TSS region transcription start site region 29878
Gm32518 3 87960084 to 87965726 5642 + lncRNA gene predicted gene, 32518
Cpgi13349 3 87960933 to 87961147 214 CpG island CpG island 13349
Gm3745 3 87968186 to 87968606 420 + pseudogene predicted gene 3745
Cpgi13350 3 87970793 to 87972323 1530 CpG island CpG island 13350
Tssr29879 3 87971071 to 87971089 18 + TSS region transcription start site region 29879
Nes 3 87971093 to 87980451 9358 + protein coding gene nestin
Tssr930 3 87971145 to 87971150 5 + TSS region transcription start site region 930
Tssr29880 3 87971154 to 87971165 11 + TSS region transcription start site region 29880
Tssr29881 3 87975767 to 87975796 29 + TSS region transcription start site region 29881
Tssr29882 3 87975947 to 87975962 15 + TSS region transcription start site region 29882
Tssr29883 3 87976023 to 87976045 22 + TSS region transcription start site region 29883
Tssr29884 3 87976108 to 87976119 11 + TSS region transcription start site region 29884
Tssr29885 3 87976220 to 87976246 26 + TSS region transcription start site region 29885
Tssr29886 3 87977209 to 87977213 4 + TSS region transcription start site region 29886
Cpgi13351 3 87986920 to 87987193 273 CpG island CpG island 13351
Bcan 3 87987531 to 88000230 12699 - protein coding gene brevican
Cpgi13352 3 87987925 to 87988487 562 CpG island CpG island 13352
Tssr33965 3 87996355 to 87996368 13 - TSS region transcription start site region 33965
Cpgi13353 3 87996504 to 87997695 1191 CpG island CpG island 13353
Cpgi13354 3 87999157 to 88000874 1717 CpG island CpG island 13354
Tssr33966 3 88000148 to 88000180 32 - TSS region transcription start site region 33966
Tssr33967 3 88000188 to 88000193 5 - TSS region transcription start site region 33967
Tssr33968 3 88000197 to 88000223 26 - TSS region transcription start site region 33968
Tssr33969 3 88000233 to 88000240 7 - TSS region transcription start site region 33969
Tssr33970 3 88000350 to 88000359 9 - TSS region transcription start site region 33970
Tssr33971 3 88000364 to 88000389 25 - TSS region transcription start site region 33971
Tssr33972 3 88000403 to 88000420 17 - TSS region transcription start site region 33972
Tssr33973 3 88000843 to 88000866 23 - TSS region transcription start site region 33973
Tssr33974 3 88000894 to 88000905 11 - TSS region transcription start site region 33974
Tssr33975 3 88001015 to 88001043 28 - TSS region transcription start site region 33975
Cpgi13355 3 88002541 to 88002707 166 CpG island CpG island 13355
Hapln2 3 88021750 to 88027583 5833 - protein coding gene hyaluronan and proteoglycan link protein 2
Cpgi13356 3 88022384 to 88024098 1714 CpG island CpG island 13356
Tssr33976 3 88027228 to 88027240 12 - TSS region transcription start site region 33976
Tssr33977 3 88027451 to 88027462 11 - TSS region transcription start site region 33977
Tssr33978 3 88027465 to 88027500 35 - TSS region transcription start site region 33978
Tssr29887 3 88030839 to 88030850 11 + TSS region transcription start site region 29887
Tssr29888 3 88030852 to 88030863 11 + TSS region transcription start site region 29888
Tssr29889 3 88030872 to 88030885 13 + TSS region transcription start site region 29889
Gm19439 3 88030878 to 88033150 2272 + lncRNA gene predicted gene, 19439
Cpgi13357 3 88043089 to 88043548 459 CpG island CpG island 13357
Tssr29890 3 88043098 to 88043128 30 + TSS region transcription start site region 29890
Gpatch4 3 88043108 to 88055993 12885 + protein coding gene G patch domain containing 4
Tssr29891 3 88043131 to 88043150 19 + TSS region transcription start site region 29891
Tssr29892 3 88055123 to 88055134 11 + TSS region transcription start site region 29892
Tssr29893 3 88055484 to 88055492 8 + TSS region transcription start site region 29893
Naxe 3 88056520 to 88058495 1975 - protein coding gene NAD(P)HX epimerase
Cpgi13358 3 88057864 to 88058736 872 CpG island CpG island 13358
Tssr33979 3 88058232 to 88058245 13 - TSS region transcription start site region 33979
Tssr33980 3 88058446 to 88058535 89 - TSS region transcription start site region 33980
Ttc24 3 88069410 to 88078304 8894 - protein coding gene tetratricopeptide repeat domain 24
Tssr33981 3 88072039 to 88072042 3 - TSS region transcription start site region 33981
Tssr33982 3 88072046 to 88072068 22 - TSS region transcription start site region 33982
Tssr33983 3 88078295 to 88078328 33 - TSS region transcription start site region 33983
Cpgi13359 3 88081873 to 88082393 520 CpG island CpG island 13359
Tssr29894 3 88081997 to 88082051 54 + TSS region transcription start site region 29894
Iqgap3 3 88082051 to 88121048 38997 + protein coding gene IQ motif containing GTPase activating protein 3
D3Mit210 3 88089061 to 88089168 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 210
Gm40087 3 88133515 to 88138419 4904 + lncRNA gene predicted gene, 40087
Tssr29895 3 88138789 to 88138805 16 + TSS region transcription start site region 29895
Cpgi13360 3 88138870 to 88139433 563 CpG island CpG island 13360
Tssr29896 3 88138891 to 88138904 13 + TSS region transcription start site region 29896
Tssr33984 3 88139433 to 88139467 34 - TSS region transcription start site region 33984
Tssr33985 3 88139929 to 88139945 16 - TSS region transcription start site region 33985
Tssr29897 3 88140837 to 88140855 18 + TSS region transcription start site region 29897
Tssr29898 3 88141160 to 88141164 4 + TSS region transcription start site region 29898
Tssr33986 3 88141626 to 88141639 13 - TSS region transcription start site region 33986
Tssr29899 3 88141767 to 88141771 4 + TSS region transcription start site region 29899
Cpgi13361 3 88141879 to 88143560 1681 CpG island CpG island 13361
Tssr29900 3 88141973 to 88142024 51 + TSS region transcription start site region 29900
Tssr33987 3 88142174 to 88142194 20 - TSS region transcription start site region 33987
Tssr29901 3 88142328 to 88142483 155 + TSS region transcription start site region 29901
Mef2d 3 88142372 to 88172086 29714 + protein coding gene myocyte enhancer factor 2D
Tssr29902 3 88142536 to 88142545 9 + TSS region transcription start site region 29902
Tssr29903 3 88142547 to 88142585 38 + TSS region transcription start site region 29903
Tssr29904 3 88142702 to 88142745 43 + TSS region transcription start site region 29904
Tssr29905 3 88142802 to 88142822 20 + TSS region transcription start site region 29905
Tssr33988 3 88143209 to 88143229 20 - TSS region transcription start site region 33988
Tssr29906 3 88143349 to 88143448 99 + TSS region transcription start site region 29906
Tssr33989 3 88143620 to 88143631 11 - TSS region transcription start site region 33989
Tssr29907 3 88144332 to 88144340 8 + TSS region transcription start site region 29907
Tssr29908 3 88145582 to 88145600 18 + TSS region transcription start site region 29908
Tssr29909 3 88158079 to 88158094 15 + TSS region transcription start site region 29909
Tssr29910 3 88159724 to 88159731 7 + TSS region transcription start site region 29910
Tssr33990 3 88161304 to 88161324 20 - TSS region transcription start site region 33990
Tssr29911 3 88163043 to 88163053 10 + TSS region transcription start site region 29911
Tssr29912 3 88167572 to 88167588 16 + TSS region transcription start site region 29912
Tssr29913 3 88167594 to 88167654 60 + TSS region transcription start site region 29913
Tssr29914 3 88170324 to 88170336 12 + TSS region transcription start site region 29914
1700113A16Rik 3 88171560 to 88177785 6225 - antisense lncRNA gene RIKEN cDNA 1700113A16 gene
Cpgi13362 3 88177544 to 88178371 827 CpG island CpG island 13362
Tssr33991 3 88177671 to 88177783 112 - TSS region transcription start site region 33991
D3Mit74 3 88187246 to 88187394 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 74
AI849053 3 88199102 to 88204595 5493 - lincRNA gene expressed sequence AI849053
Tssr29915 3 88200255 to 88200269 14 + TSS region transcription start site region 29915
Tssr29916 3 88200270 to 88200279 9 + TSS region transcription start site region 29916
Tssr29917 3 88200285 to 88200318 33 + TSS region transcription start site region 29917
Cpgi13363 3 88200298 to 88201591 1293 CpG island CpG island 13363
Tssr29918 3 88200323 to 88200348 25 + TSS region transcription start site region 29918
Tssr29919 3 88200607 to 88200629 22 + TSS region transcription start site region 29919
AW047730 3 88200623 to 88203481 2858 + unclassified non-coding RNA gene expressed sequence AW047730
Tssr29920 3 88206525 to 88206537 12 + TSS region transcription start site region 29920
Tssr29921 3 88206786 to 88206824 38 + TSS region transcription start site region 29921
Gm3764 3 88206813 to 88229959 23146 + lincRNA gene predicted gene 3764
Tssr29922 3 88207100 to 88207135 35 + TSS region transcription start site region 29922
Cpgi13364 3 88207218 to 88207584 366 CpG island CpG island 13364
Tssr29923 3 88207255 to 88207305 50 + TSS region transcription start site region 29923
Tssr29924 3 88207308 to 88207328 20 + TSS region transcription start site region 29924
Tssr29925 3 88212739 to 88212771 32 + TSS region transcription start site region 29925
Cpgi13365 3 88214387 to 88216175 1788 CpG island CpG island 13365
Tssr29926 3 88214474 to 88214491 17 + TSS region transcription start site region 29926
Mir3093 3 88215171 to 88215257 86 + miRNA gene microRNA 3093
Gm25641 3 88215589 to 88215696 107 - miRNA gene predicted gene, 25641
Mir9-1 3 88215598 to 88215686 88 + miRNA gene microRNA 9-1
Tssr29927 3 88215672 to 88215680 8 + TSS region transcription start site region 29927
Tssr29928 3 88218241 to 88218246 5 + TSS region transcription start site region 29928
4931402H11Rik 3 88227410 to 88232335 4925 unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
Tssr29929 3 88227434 to 88227438 4 + TSS region transcription start site region 29929
Tssr29930 3 88228329 to 88228340 11 + TSS region transcription start site region 29930
Cpgi13366 3 88240735 to 88241875 1140 CpG island CpG island 13366
Rhbg 3 88242874 to 88254709 11835 - protein coding gene Rhesus blood group-associated B glycoprotein
Gm38392 3 88243380 to 88287210 43830 - protein coding gene predicted gene, 38392
Cpgi13367 3 88245854 to 88246065 211 CpG island CpG island 13367
Cpgi13368 3 88254322 to 88254898 576 CpG island CpG island 13368
Tssr33992 3 88254675 to 88254689 14 - TSS region transcription start site region 33992
Tssr33993 3 88254706 to 88254722 16 - TSS region transcription start site region 33993
Tssr33994 3 88276901 to 88276921 20 - TSS region transcription start site region 33994
Tssr29931 3 88277063 to 88277081 18 + TSS region transcription start site region 29931
Tssr29932 3 88278448 to 88278459 11 + TSS region transcription start site region 29932
Tssr33995 3 88281270 to 88281286 16 - TSS region transcription start site region 33995
Tssr931 3 88282037 to 88282044 7 + TSS region transcription start site region 931
Tsacc 3 88282757 to 88296999 14242 - protein coding gene TSSK6 activating co-chaperone
Gm37116 3 88284607 to 88284753 146 - pseudogene predicted gene, 37116
Tssr33996 3 88296398 to 88296410 12 - TSS region transcription start site region 33996
Cpgi13369 3 88296586 to 88297824 1238 CpG island CpG island 13369
Tssr33997 3 88296590 to 88296610 20 - TSS region transcription start site region 33997
Tssr29933 3 88296643 to 88296672 29 + TSS region transcription start site region 29933
Tssr33998 3 88296850 to 88296909 59 - TSS region transcription start site region 33998
Tssr33999 3 88296925 to 88296939 14 - TSS region transcription start site region 33999
Tssr34000 3 88296979 to 88296988 9 - TSS region transcription start site region 34000
Tssr29934 3 88296981 to 88296992 11 + TSS region transcription start site region 29934
Tssr29935 3 88297115 to 88297144 29 + TSS region transcription start site region 29935
Cct3 3 88297135 to 88321766 24631 + protein coding gene chaperonin containing Tcp1, subunit 3 (gamma)
Tssr29936 3 88297147 to 88297193 46 + TSS region transcription start site region 29936
Tssr29937 3 88297196 to 88297218 22 + TSS region transcription start site region 29937
Glmp 3 88325023 to 88328631 3608 + protein coding gene glycosylated lysosomal membrane protein
Tssr29938 3 88325030 to 88325075 45 + TSS region transcription start site region 29938
Tssr29939 3 88325078 to 88325080 2 + TSS region transcription start site region 29939
Tssr29940 3 88326162 to 88326180 18 + TSS region transcription start site region 29940
Tssr29941 3 88326413 to 88326444 31 + TSS region transcription start site region 29941
Tmem79 3 88328653 to 88334433 5780 - protein coding gene transmembrane protein 79
Cpgi13370 3 88332503 to 88333408 905 CpG island CpG island 13370
Tssr34001 3 88334428 to 88334466 38 - TSS region transcription start site region 34001
Tssr34002 3 88334482 to 88334495 13 - TSS region transcription start site region 34002
BC038331 3 88334738 to 88336177 1439 unclassified gene cDNA sequence BC038331
D3Mit175 3 88334866 to 88335000 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 175
Cpgi13371 3 88335828 to 88336877 1049 CpG island CpG island 13371
Tssr34003 3 88336165 to 88336198 33 - TSS region transcription start site region 34003
Tssr29942 3 88336256 to 88336304 48 + TSS region transcription start site region 29942
Smg5 3 88336260 to 88362337 26077 + protein coding gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr34004 3 88336498 to 88336526 28 - TSS region transcription start site region 34004
Tssr29943 3 88337843 to 88337853 10 + TSS region transcription start site region 29943
Tssr29944 3 88340277 to 88340281 4 + TSS region transcription start site region 29944
Tssr29945 3 88351097 to 88351112 15 + TSS region transcription start site region 29945
Cpgi13372 3 88352960 to 88353140 180 CpG island CpG island 13372
Tssr29946 3 88358282 to 88358295 13 + TSS region transcription start site region 29946
Cpgi13373 3 88364482 to 88364723 241 CpG island CpG island 13373
Tssr29947 3 88364548 to 88364606 58 + TSS region transcription start site region 29947
Paqr6 3 88364584 to 88368541 3957 + protein coding gene progestin and adipoQ receptor family member VI
Cpgi13374 3 88365713 to 88366378 665 CpG island CpG island 13374
Bglap3 3 88368616 to 88372741 4125 - protein coding gene bone gamma-carboxyglutamate protein 3
Tssr34005 3 88369730 to 88369735 5 - TSS region transcription start site region 34005
Tssr34006 3 88372740 to 88372745 5 - TSS region transcription start site region 34006
Gm21956 3 88376023 to 88377075 1052 + pseudogene predicted gene, 21956
Bglap2 3 88377736 to 88378699 963 - protein coding gene bone gamma-carboxyglutamate protein 2
Del(3Bglap2-Bglap)1Vari 3 88377736 to 88384464 6728 cytogenetic marker deletion, Chr3, Bart Williams
Tssr34007 3 88378740 to 88378753 13 - TSS region transcription start site region 34007
Gm6821 3 88381772 to 88382844 1072 + pseudogene predicted gene 6821
Bglap 3 88383501 to 88384464 963 - protein coding gene bone gamma carboxyglutamate protein
Tssr34008 3 88384453 to 88384471 18 - TSS region transcription start site region 34008
Pmf1 3 88394143 to 88410331 16188 - protein coding gene polyamine-modulated factor 1
Tssr34009 3 88395954 to 88395998 44 - TSS region transcription start site region 34009
Cpgi13375 3 88409801 to 88410432 631 CpG island CpG island 13375
Tssr34010 3 88410067 to 88410094 27 - TSS region transcription start site region 34010
Tssr34011 3 88410295 to 88410351 56 - TSS region transcription start site region 34011
Tssr34012 3 88410365 to 88410370 5 - TSS region transcription start site region 34012
Tssr34013 3 88410377 to 88410388 11 - TSS region transcription start site region 34013
Slc25a44 3 88410498 to 88425139 14641 - protein coding gene solute carrier family 25, member 44
Cpgi13376 3 88424752 to 88425243 491 CpG island CpG island 13376
Tssr29948 3 88424794 to 88424800 6 + TSS region transcription start site region 29948
Gm33513 3 88425080 to 88428668 3588 + lncRNA gene predicted gene, 33513
Tssr34014 3 88425094 to 88425139 45 - TSS region transcription start site region 34014
Gm42814 3 88428936 to 88429395 459 + pseudogene predicted gene 42814
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A