Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:86793997-87204033

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dclk2 3 86786151 to 86920852 134701 - protein coding gene doublecortin-like kinase 2
Tssr33909 3 86799145 to 86799177 32 - TSS region transcription start site region 33909
Tssr33910 3 86799180 to 86799194 14 - TSS region transcription start site region 33910
Gm46810 3 86825654 to 86827101 1447 - lncRNA gene predicted gene, 46810
D3Ertd731e 3 86845081 to 86845285 204 DNA segment DNA segment, Chr 3, ERATO Doi 731, expressed
Tssr29794 3 86845832 to 86845849 17 + TSS region transcription start site region 29794
Tssr29795 3 86863214 to 86863221 7 + TSS region transcription start site region 29795
Gm37025 3 86864492 to 86865320 828 + pseudogene predicted gene, 37025
Tssr33911 3 86899433 to 86899438 5 - TSS region transcription start site region 33911
Tssr33912 3 86902005 to 86902016 11 - TSS region transcription start site region 33912
Cpgi13327 3 86915290 to 86915537 247 CpG island CpG island 13327
Cpgi13328 3 86919523 to 86921109 1586 CpG island CpG island 13328
Tssr33913 3 86920333 to 86920348 15 - TSS region transcription start site region 33913
Tssr33914 3 86920363 to 86920390 27 - TSS region transcription start site region 33914
Tssr33915 3 86920395 to 86920413 18 - TSS region transcription start site region 33915
Tssr33916 3 86920488 to 86920535 47 - TSS region transcription start site region 33916
Tssr33917 3 86920543 to 86920565 22 - TSS region transcription start site region 33917
Tssr33918 3 86920830 to 86920977 147 - TSS region transcription start site region 33918
Cpgi13329 3 86921433 to 86921602 169 CpG island CpG island 13329
Gm23376 3 86930743 to 86930902 159 + snRNA gene predicted gene, 23376
Gm37207 3 86933368 to 86933663 295 - pseudogene predicted gene, 37207
Tssr29796 3 86986562 to 86986584 22 + TSS region transcription start site region 29796
Cd1d2 3 86986586 to 86989533 2947 + polymorphic pseudogene CD1d2 antigen
Cd1d1 3 86995834 to 86999340 3506 - protein coding gene CD1d1 antigen
Tssr33919 3 86998997 to 86999033 36 - TSS region transcription start site region 33919
Tssr33920 3 86999264 to 86999275 11 - TSS region transcription start site region 33920
Tssr33921 3 86999284 to 86999334 50 - TSS region transcription start site region 33921
Tssr33922 3 86999347 to 86999372 25 - TSS region transcription start site region 33922
Tssr33923 3 87012244 to 87012253 9 - TSS region transcription start site region 33923
Gm8869 3 87022937 to 87023883 946 - pseudogene predicted gene 8869
Gm18403 3 87054359 to 87054887 528 + pseudogene predicted gene, 18403
Gm37575 3 87060125 to 87060433 308 + pseudogene predicted gene, 37575
Gm24472 3 87066893 to 87067024 131 + snoRNA gene predicted gene, 24472
Kirrel 3 87078593 to 87174747 96154 - protein coding gene kirre like nephrin family adhesion molecule 1
Tssr33924 3 87112271 to 87112274 3 - TSS region transcription start site region 33924
Tssr33925 3 87112436 to 87112445 9 - TSS region transcription start site region 33925
Tssr33926 3 87112463 to 87112469 6 - TSS region transcription start site region 33926
D3Mit155 3 87126643 to 87126775 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155
D3Mit155.1 3 87126737 to 87126846 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 155.1
Gm37855 3 87157693 to 87162455 4762 + lincRNA gene predicted gene, 37855
Cpgi13330 3 87174209 to 87175037 828 CpG island CpG island 13330
Tssr33927 3 87174458 to 87174485 27 - TSS region transcription start site region 33927
Tssr33928 3 87174518 to 87174578 60 - TSS region transcription start site region 33928
Tssr33929 3 87174632 to 87174655 23 - TSS region transcription start site region 33929
Tssr33930 3 87174657 to 87174679 22 - TSS region transcription start site region 33930