Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:85277495-86727507

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Cpgi13319 3 85280539 to 85280824 285 CpG island CpG island 13319
D3Mit281 3 85284759 to 85284876 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 281
1700036G14Rik 3 85317519 to 85332027 14508 + antisense lncRNA gene RIKEN cDNA 1700036G14 gene
Gm31210 3 85342121 to 85343407 1286 + lncRNA gene predicted gene, 31210
Gm31359 3 85391545 to 85402099 10554 - lncRNA gene predicted gene, 31359
Gm42813 3 85397524 to 85428128 30604 - lincRNA gene predicted gene 42813
D3Mit73 3 85399196 to 85399341 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 73
Gm31304 3 85405628 to 85410345 4717 + lncRNA gene predicted gene, 31304
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211
Glt28d2 3 85869849 to 85887516 17667 - protein coding gene glycosyltransferase 28 domain containing 2
Tssr923 3 85879035 to 85879038 3 + TSS region transcription start site region 923
Cpgi13321 3 85886937 to 85888029 1092 CpG island CpG island 13321
Tssr33883 3 85887305 to 85887316 11 - TSS region transcription start site region 33883
Tssr33884 3 85887342 to 85887355 13 - TSS region transcription start site region 33884
Tssr33885 3 85887361 to 85887374 13 - TSS region transcription start site region 33885
Tssr33886 3 85887387 to 85887412 25 - TSS region transcription start site region 33886
Tssr33887 3 85887413 to 85887456 43 - TSS region transcription start site region 33887
Tssr33888 3 85887472 to 85887499 27 - TSS region transcription start site region 33888
4933425M03Rik 3 85887691 to 85889234 1543 + unclassified gene RIKEN cDNA 4933425M03 gene
Tssr924 3 85887812 to 85887825 13 + TSS region transcription start site region 924
Tssr33889 3 85894909 to 85894917 8 - TSS region transcription start site region 33889
Gm26204 3 85908353 to 85908459 106 - snRNA gene predicted gene, 26204
Tssr29768 3 85914603 to 85914604 1 + TSS region transcription start site region 29768
Gm38030 3 85914643 to 85915117 474 + pseudogene predicted gene, 38030
Tssr29769 3 85915703 to 85915735 32 + TSS region transcription start site region 29769
Gm9790 3 85915783 to 85916070 287 + pseudogene predicted gene 9790
Gm25876 3 85950888 to 85951006 118 + snoRNA gene predicted gene, 25876
Gm24501 3 85962771 to 85962832 61 - snRNA gene predicted gene, 24501
Gm27811 3 85962847 to 85962910 63 - snRNA gene predicted gene, 27811
Cpgi13322 3 85970785 to 85971908 1123 CpG island CpG island 13322
Tssr29770 3 85971070 to 85971175 105 + TSS region transcription start site region 29770
Sh3d19 3 85971109 to 86130526 159417 + protein coding gene SH3 domain protein D19
Tssr29771 3 85971221 to 85971236 15 + TSS region transcription start site region 29771
Prss48 3 85993810 to 86002491 8681 - protein coding gene protease, serine 48
Tssr29772 3 85998867 to 85998871 4 + TSS region transcription start site region 29772
Tssr33890 3 86002495 to 86002507 12 - TSS region transcription start site region 33890
Tssr33891 3 86002515 to 86002535 20 - TSS region transcription start site region 33891
Tssr29773 3 86011590 to 86011614 24 + TSS region transcription start site region 29773
Tssr29774 3 86017231 to 86017245 14 + TSS region transcription start site region 29774
Tssr29775 3 86038837 to 86038891 54 + TSS region transcription start site region 29775
Tssr29776 3 86040531 to 86040571 40 + TSS region transcription start site region 29776
Tssr29777 3 86040805 to 86040825 20 + TSS region transcription start site region 29777
Elads2 3 86083297 to 86083297 0 QTL ENU induced lung adenoma susceptibility 2
Gm25188 3 86100534 to 86100655 121 + snoRNA gene predicted gene, 25188
Tssr29778 3 86104024 to 86104063 39 + TSS region transcription start site region 29778
Tssr29779 3 86104199 to 86104217 18 + TSS region transcription start site region 29779
Rps3a1 3 86137940 to 86142668 4728 - protein coding gene ribosomal protein S3A1
Snord73a 3 86138791 to 86138858 67 - snoRNA gene small nucleolar RNA, C/D box U73A
Rnu73b 3 86140617 to 86140687 70 - snoRNA gene U73B small nuclear RNA
Cpgi13323 3 86141834 to 86143091 1257 CpG island CpG island 13323
Tssr33892 3 86142593 to 86142636 43 - TSS region transcription start site region 33892
Tssr33893 3 86142642 to 86142658 16 - TSS region transcription start site region 33893
Tssr33894 3 86142684 to 86142689 5 - TSS region transcription start site region 33894
Gm37933 3 86142757 to 86145545 2788 + lincRNA gene predicted gene, 37933
Tssr29780 3 86143068 to 86143094 26 + TSS region transcription start site region 29780
Tssr29781 3 86143131 to 86143159 28 + TSS region transcription start site region 29781
Gm37493 3 86144937 to 86145369 432 - pseudogene predicted gene, 37493
D3Mit98 3 86181501 to 86181612 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 98
Gm23025 3 86191416 to 86191526 110 + snRNA gene predicted gene, 23025
Cpgi13324 3 86223584 to 86225310 1726 CpG island CpG island 13324
Tssr29782 3 86224199 to 86224243 44 + TSS region transcription start site region 29782
Tssr29783 3 86224665 to 86224717 52 + TSS region transcription start site region 29783
Lrba 3 86224680 to 86782692 558012 + protein coding gene LPS-responsive beige-like anchor
Gm37288 3 86263242 to 86263575 333 - pseudogene predicted gene, 37288
Tssr29784 3 86263453 to 86263457 4 + TSS region transcription start site region 29784
9430099H24Rik 3 86267653 to 86268670 1017 unclassified gene RIKEN cDNA 9430099H24 gene
Gm26343 3 86275232 to 86275362 130 - snoRNA gene predicted gene, 26343
Tssr29785 3 86312202 to 86312210 8 + TSS region transcription start site region 29785
Gm40083 3 86352016 to 86362442 10426 - lncRNA gene predicted gene, 40083
9030218A15Rik 3 86362486 to 86363578 1092 unclassified gene RIKEN cDNA 9030218A15 gene
Tssr29786 3 86362487 to 86362488 1 + TSS region transcription start site region 29786
Gm23850 3 86364457 to 86364625 168 + snRNA gene predicted gene, 23850
Gm25039 3 86384247 to 86384353 106 + snRNA gene predicted gene, 25039
Gm31677 3 86524424 to 86558716 34292 - lncRNA gene predicted gene, 31677
Tssr29787 3 86539738 to 86539747 9 + TSS region transcription start site region 29787
Tssr29788 3 86539819 to 86539832 13 + TSS region transcription start site region 29788
Tssr29789 3 86539844 to 86539855 11 + TSS region transcription start site region 29789
Tssr29790 3 86539884 to 86539907 23 + TSS region transcription start site region 29790
Mab21l2 3 86545581 to 86548283 2702 - protein coding gene mab-21-like 2
Cpgi13325 3 86546618 to 86547863 1245 CpG island CpG island 13325
Tssr33895 3 86546643 to 86546655 12 - TSS region transcription start site region 33895
Tssr33896 3 86547021 to 86547032 11 - TSS region transcription start site region 33896
Tssr33897 3 86548052 to 86548081 29 - TSS region transcription start site region 33897
Cpgi13326 3 86548119 to 86548375 256 CpG island CpG island 13326
Tssr33898 3 86548268 to 86548290 22 - TSS region transcription start site region 33898
Tssr33899 3 86548318 to 86548328 10 - TSS region transcription start site region 33899
Tssr33900 3 86548332 to 86548338 6 - TSS region transcription start site region 33900
Tssr33901 3 86548437 to 86548452 15 - TSS region transcription start site region 33901
Tssr33902 3 86548477 to 86548484 7 - TSS region transcription start site region 33902
Tssr33903 3 86548527 to 86548543 16 - TSS region transcription start site region 33903
Tssr33904 3 86548582 to 86548598 16 - TSS region transcription start site region 33904
Tssr33905 3 86548607 to 86548620 13 - TSS region transcription start site region 33905
Tssr29791 3 86548878 to 86548883 5 + TSS region transcription start site region 29791
Tssr33906 3 86551131 to 86551140 9 - TSS region transcription start site region 33906
Tssr33907 3 86551265 to 86551283 18 - TSS region transcription start site region 33907
Tssr33908 3 86551304 to 86551316 12 - TSS region transcription start site region 33908
Tssr29792 3 86551756 to 86551783 27 + TSS region transcription start site region 29792
Ewc3 3 86661247 to 86661247 0 QTL ethanol withdrawal and consumption 3
Gm3788 3 86672033 to 86672168 135 - pseudogene predicted gene 3788
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5