Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:85022377-85912498

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Gm30944 3 85021687 to 85028574 6887 + lncRNA gene predicted gene, 30944
Tssr33880 3 85037954 to 85037956 2 - TSS region transcription start site region 33880
Gm30991 3 85049140 to 85107896 58756 + lncRNA gene predicted gene, 30991
Gm31096 3 85114984 to 85122505 7521 - lncRNA gene predicted gene, 31096
Gm38041 3 85152036 to 85152696 660 - pseudogene predicted gene, 38041
Cpgi13318 3 85186652 to 85186964 312 CpG island CpG island 13318
Gm38313 3 85195182 to 85196447 1265 - unclassified gene predicted gene, 38313
Cpgi13319 3 85280539 to 85280824 285 CpG island CpG island 13319
D3Mit281 3 85284759 to 85284876 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 281
1700036G14Rik 3 85317519 to 85332027 14508 + antisense lncRNA gene RIKEN cDNA 1700036G14 gene
Gm31210 3 85342121 to 85343407 1286 + lncRNA gene predicted gene, 31210
Gm31359 3 85391545 to 85402099 10554 - lncRNA gene predicted gene, 31359
Gm42813 3 85397524 to 85428128 30604 - lincRNA gene predicted gene 42813
D3Mit73 3 85399196 to 85399341 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 73
Gm31304 3 85405628 to 85410345 4717 + lncRNA gene predicted gene, 31304
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211
Glt28d2 3 85869849 to 85887516 17667 - protein coding gene glycosyltransferase 28 domain containing 2
Tssr923 3 85879035 to 85879038 3 + TSS region transcription start site region 923
Cpgi13321 3 85886937 to 85888029 1092 CpG island CpG island 13321
Tssr33883 3 85887305 to 85887316 11 - TSS region transcription start site region 33883
Tssr33884 3 85887342 to 85887355 13 - TSS region transcription start site region 33884
Tssr33885 3 85887361 to 85887374 13 - TSS region transcription start site region 33885
Tssr33886 3 85887387 to 85887412 25 - TSS region transcription start site region 33886
Tssr33887 3 85887413 to 85887456 43 - TSS region transcription start site region 33887
Tssr33888 3 85887472 to 85887499 27 - TSS region transcription start site region 33888
4933425M03Rik 3 85887691 to 85889234 1543 + unclassified gene RIKEN cDNA 4933425M03 gene
Tssr924 3 85887812 to 85887825 13 + TSS region transcription start site region 924
Tssr33889 3 85894909 to 85894917 8 - TSS region transcription start site region 33889
Gm26204 3 85908353 to 85908459 106 - snRNA gene predicted gene, 26204
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5