Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:84937377-85997498

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Fbxw7 3 84815268 to 84979198 163930 + protein coding gene F-box and WD-40 domain protein 7
Tssr29752 3 84952167 to 84952186 19 + TSS region transcription start site region 29752
Tssr29753 3 84952188 to 84952200 12 + TSS region transcription start site region 29753
Tssr29754 3 84952203 to 84952230 27 + TSS region transcription start site region 29754
Tssr29755 3 84952269 to 84952291 22 + TSS region transcription start site region 29755
Tssr29756 3 84952333 to 84952409 76 + TSS region transcription start site region 29756
Tssr29757 3 84952427 to 84952435 8 + TSS region transcription start site region 29757
Tssr29758 3 84952457 to 84952474 17 + TSS region transcription start site region 29758
Tssr29759 3 84952489 to 84952500 11 + TSS region transcription start site region 29759
Tssr29760 3 84952523 to 84952538 15 + TSS region transcription start site region 29760
Fbxw7as1 3 84965056 to 84965580 524 - antisense lncRNA gene F-box and WD-40 domain protein 7 antisense transcript 1
Tssr29761 3 84977566 to 84977595 29 + TSS region transcription start site region 29761
Tssr29762 3 84977946 to 84977961 15 + TSS region transcription start site region 29762
Tssr29763 3 84978129 to 84978133 4 + TSS region transcription start site region 29763
Gm30944 3 85021687 to 85028574 6887 + lncRNA gene predicted gene, 30944
Tssr33880 3 85037954 to 85037956 2 - TSS region transcription start site region 33880
Gm30991 3 85049140 to 85107896 58756 + lncRNA gene predicted gene, 30991
Gm31096 3 85114984 to 85122505 7521 - lncRNA gene predicted gene, 31096
Gm38041 3 85152036 to 85152696 660 - pseudogene predicted gene, 38041
Cpgi13318 3 85186652 to 85186964 312 CpG island CpG island 13318
Gm38313 3 85195182 to 85196447 1265 - unclassified gene predicted gene, 38313
Cpgi13319 3 85280539 to 85280824 285 CpG island CpG island 13319
D3Mit281 3 85284759 to 85284876 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 281
1700036G14Rik 3 85317519 to 85332027 14508 + antisense lncRNA gene RIKEN cDNA 1700036G14 gene
Gm31210 3 85342121 to 85343407 1286 + lncRNA gene predicted gene, 31210
Gm31359 3 85391545 to 85402099 10554 - lncRNA gene predicted gene, 31359
Gm42813 3 85397524 to 85428128 30604 - lincRNA gene predicted gene 42813
D3Mit73 3 85399196 to 85399341 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 73
Gm31304 3 85405628 to 85410345 4717 + lncRNA gene predicted gene, 31304
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211
Glt28d2 3 85869849 to 85887516 17667 - protein coding gene glycosyltransferase 28 domain containing 2
Tssr923 3 85879035 to 85879038 3 + TSS region transcription start site region 923
Cpgi13321 3 85886937 to 85888029 1092 CpG island CpG island 13321
Tssr33883 3 85887305 to 85887316 11 - TSS region transcription start site region 33883
Tssr33884 3 85887342 to 85887355 13 - TSS region transcription start site region 33884
Tssr33885 3 85887361 to 85887374 13 - TSS region transcription start site region 33885
Tssr33886 3 85887387 to 85887412 25 - TSS region transcription start site region 33886
Tssr33887 3 85887413 to 85887456 43 - TSS region transcription start site region 33887
Tssr33888 3 85887472 to 85887499 27 - TSS region transcription start site region 33888
4933425M03Rik 3 85887691 to 85889234 1543 + unclassified gene RIKEN cDNA 4933425M03 gene
Tssr924 3 85887812 to 85887825 13 + TSS region transcription start site region 924
Tssr33889 3 85894909 to 85894917 8 - TSS region transcription start site region 33889
Gm26204 3 85908353 to 85908459 106 - snRNA gene predicted gene, 26204
Tssr29768 3 85914603 to 85914604 1 + TSS region transcription start site region 29768
Gm38030 3 85914643 to 85915117 474 + pseudogene predicted gene, 38030
Tssr29769 3 85915703 to 85915735 32 + TSS region transcription start site region 29769
Gm9790 3 85915783 to 85916070 287 + pseudogene predicted gene 9790
Gm25876 3 85950888 to 85951006 118 + snoRNA gene predicted gene, 25876
Gm24501 3 85962771 to 85962832 61 - snRNA gene predicted gene, 24501
Gm27811 3 85962847 to 85962910 63 - snRNA gene predicted gene, 27811
Cpgi13322 3 85970785 to 85971908 1123 CpG island CpG island 13322
Tssr29770 3 85971070 to 85971175 105 + TSS region transcription start site region 29770
Sh3d19 3 85971109 to 86130526 159417 + protein coding gene SH3 domain protein D19
Tssr29771 3 85971221 to 85971236 15 + TSS region transcription start site region 29771
Prss48 3 85993810 to 86002491 8681 - protein coding gene protease, serine 48
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5