Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:56226681-57366810

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40053 3 56255900 to 56269938 14038 - lncRNA gene predicted gene, 40053
Tssr29178 3 56325286 to 56325288 2 + TSS region transcription start site region 29178
D3Mit334 3 56345296 to 56345412 116 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 334
Gm40054 3 56347034 to 56357550 10516 - lncRNA gene predicted gene, 40054
D3Dcr7 3 56402560 to 56402660 100 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 7
Gm32177 3 56436001 to 56438746 2745 - lncRNA gene predicted gene, 32177
Gm25727 3 56445282 to 56445412 130 - snoRNA gene predicted gene, 25727
Cpgi13194 3 56575474 to 56575727 253 CpG island CpG island 13194
Tssr29179 3 56575506 to 56575537 31 + TSS region transcription start site region 29179
Tssr29180 3 56575660 to 56575673 13 + TSS region transcription start site region 29180
Tssr29181 3 56575690 to 56575701 11 + TSS region transcription start site region 29181
Gm32237 3 56698422 to 56705065 6643 + lncRNA gene predicted gene, 32237
D3Mit25.1 3 56796512 to 56796633 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 25.1
Amzn1 3 56796681 to 56796810 129 QTL anatomical modifier of Zfp423 1
D3Mit25 3 56796681 to 56796810 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 25
Cd4ts1 3 56796681 to 56796810 129 QTL CD4 T cell subset 1
Lmr11b 3 56796681 to 56796810 129 QTL leishmaniasis resistance 11b
Ltpr3a 3 56796681 to 56796810 129 QTL Leishmania tropica response 3a
Gm2622 3 56828317 to 56828787 470 - pseudogene predicted gene 2622
D3Mit69 3 56859588 to 56859736 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 69
D3Mit335 3 57017590 to 57017714 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 335
Gm22269 3 57054150 to 57054279 129 + snoRNA gene predicted gene, 22269
D3Mit171 3 57097270 to 57097419 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 171
Gm8177 3 57135494 to 57136821 1327 - pseudogene predicted gene 8177
Cpgi13195 3 57136820 to 57137062 242 CpG island CpG island 13195
4933408K01Rik 3 57227724 to 57229177 1453 unclassified gene RIKEN cDNA 4933408K01 gene
Tssr33311 3 57234620 to 57234623 3 - TSS region transcription start site region 33311
Gm43424 3 57249252 to 57249504 252 + pseudogene predicted gene 43424
Gm18660 3 57271741 to 57272369 628 - pseudogene predicted gene, 18660
Tm4sf1 3 57287064 to 57301983 14919 - protein coding gene transmembrane 4 superfamily member 1
Tssr33312 3 57294788 to 57294799 11 - TSS region transcription start site region 33312
Tssr33313 3 57294880 to 57294899 19 - TSS region transcription start site region 33313
Tssr33314 3 57294910 to 57294921 11 - TSS region transcription start site region 33314
Tssr33315 3 57295085 to 57295109 24 - TSS region transcription start site region 33315
Tssr33316 3 57295124 to 57295196 72 - TSS region transcription start site region 33316
Tssr33317 3 57301943 to 57301956 13 - TSS region transcription start site region 33317
Tssr33318 3 57301957 to 57301997 40 - TSS region transcription start site region 33318
Tssr33319 3 57301999 to 57302009 10 - TSS region transcription start site region 33319
Tssr883 3 57312444 to 57312446 2 - TSS region transcription start site region 883
Tssr33320 3 57340967 to 57340971 4 - TSS region transcription start site region 33320
Tssr29182 3 57362241 to 57362252 11 + TSS region transcription start site region 29182
Gm5276 3 57362388 to 57363434 1046 + pseudogene predicted gene 5276
Ltpr3 3 100556821 to 56796681 -43760140 QTL Leishmania tropica response 3