MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 3:55462760-55622976

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Dclk1	3	55242369 to 55539068	296699	+	protein coding gene	doublecortin-like kinase 1
Gm21954	3	55461985 to 55472210	10225	-	protein coding gene	predicted gene, 21954
Tssr29166	3	55467193 to 55467197	4	+	TSS region	transcription start site region 29166
Gm31443	3	55476089 to 55481618	5529	-	lncRNA gene	predicted gene, 31443
Gm42607	3	55483788 to 55487180	3392	+	unclassified gene	predicted gene 42607
Tssr29167	3	55503152 to 55503153	1	+	TSS region	transcription start site region 29167
Tssr881	3	55516357 to 55516398	41	+	TSS region	transcription start site region 881
Gm42608	3	55517569 to 55519586	2017	+	unclassified gene	predicted gene 42608
Tssr29168	3	55527875 to 55527886	11	+	TSS region	transcription start site region 29168
Tssr29169	3	55533778 to 55533795	17	+	TSS region	transcription start site region 29169
Tssr29170	3	55533992 to 55533995	3	+	TSS region	transcription start site region 29170
Tssr29171	3	55537176 to 55537185	9	+	TSS region	transcription start site region 29171
Tssr33298	3	55539969 to 55539972	3	-	TSS region	transcription start site region 33298
Gm31796	3	55540450 to 55543382	2932	-	lncRNA gene	predicted gene, 31796
Cpgi13189	3	55542760 to 55542976	216		CpG island	CpG island 13189
Gm25404	3	55548446 to 55548552	106	+	snRNA gene	predicted gene, 25404
Gm43548	3	55574921 to 55577273	2352	+	unclassified gene	predicted gene 43548
Gm43549	3	55580430 to 55581434	1004	-	lincRNA gene	predicted gene 43549