Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:39034736-40924743

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit3 3 39047078 to 39047179 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 3
Gm43308 3 39128533 to 39128905 372 - pseudogene predicted gene 43308
Gm30011 3 39150832 to 39159670 8838 - lncRNA gene predicted gene, 30011
Gm43008 3 39217561 to 39217846 285 - pseudogene predicted gene 43008
Gm42214 3 39277131 to 39305932 28801 + lncRNA gene predicted gene, 42214
Gm9845 3 39358306 to 39358903 597 - pseudogene predicted pseudogene 9845
Tssr33062 3 39359156 to 39359160 4 - TSS region transcription start site region 33062
Tssr28940 3 39364563 to 39364565 2 + TSS region transcription start site region 28940
Gm20566 3 39443893 to 39444348 455 + pseudogene predicted gene, 20566
Gm30063 3 39460780 to 39598651 137871 + lncRNA gene predicted gene, 30063
Gm42215 3 39525522 to 39534150 8628 - lncRNA gene predicted gene, 42215
Tssr33063 3 39533910 to 39533921 11 - TSS region transcription start site region 33063
D3Mit307 3 39539052 to 39539157 105 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 307
n-R5s195 3 39635964 to 39636082 118 - rRNA gene nuclear encoded rRNA 5S 195
Gm42781 3 39636059 to 39638777 2718 + unclassified gene predicted gene 42781
Gm23796 3 39666288 to 39666447 159 + snRNA gene predicted gene, 23796
Gm46834 3 39713150 to 39725653 12503 + lncRNA gene predicted gene, 46834
Gm23831 3 39799632 to 39799716 84 - snoRNA gene predicted gene, 23831
Gm42786 3 39820481 to 39820760 279 - pseudogene predicted gene 42786
Gm42785 3 39823577 to 39827411 3834 + pseudogene predicted gene 42785
Tssr33064 3 39937416 to 39937422 6 - TSS region transcription start site region 33064
Tssr28941 3 39979736 to 39979743 7 + TSS region transcription start site region 28941
Tssr28942 3 39979777 to 39979785 8 + TSS region transcription start site region 28942
Tssr28943 3 40160354 to 40160385 31 + TSS region transcription start site region 28943
D3Mit94 3 40212498 to 40212608 110 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 94
Tssr28944 3 40410161 to 40410163 2 + TSS region transcription start site region 28944
Gm30184 3 40425710 to 40453799 28089 - lncRNA gene predicted gene, 30184
Gm42216 3 40458429 to 40461148 2719 + lncRNA gene predicted gene, 42216
Tssr28945 3 40459843 to 40459844 1 + TSS region transcription start site region 28945
Gm42217 3 40480897 to 40485732 4835 + lncRNA gene predicted gene, 42217
Gm46801 3 40487017 to 40489930 2913 + lncRNA gene predicted gene, 46801
1700017G19Rik 3 40504867 to 40522912 18045 - lincRNA gene RIKEN cDNA 1700017G19 gene
Tssr33065 3 40509737 to 40509782 45 - TSS region transcription start site region 33065
Gm46800 3 40509980 to 40511831 1851 + lncRNA gene predicted gene, 46800
Gm23810 3 40518818 to 40518891 73 + miRNA gene predicted gene, 23810
Tssr33066 3 40522909 to 40522918 9 - TSS region transcription start site region 33066
Tssr28946 3 40531007 to 40531029 22 + TSS region transcription start site region 28946
Tssr28947 3 40531143 to 40531156 13 + TSS region transcription start site region 28947
Cpgi13107 3 40531251 to 40532079 828 CpG island CpG island 13107
Intu 3 40531291 to 40704776 173485 + protein coding gene inturned planar cell polarity protein
Tssr28948 3 40531391 to 40531432 41 + TSS region transcription start site region 28948
Tssr28949 3 40531465 to 40531470 5 + TSS region transcription start site region 28949
Tssr28950 3 40531548 to 40531562 14 + TSS region transcription start site region 28950
Tssr28951 3 40531578 to 40531599 21 + TSS region transcription start site region 28951
Tssr28952 3 40531608 to 40531626 18 + TSS region transcription start site region 28952
Tssr28953 3 40531640 to 40531653 13 + TSS region transcription start site region 28953
Tssr28954 3 40531682 to 40531705 23 + TSS region transcription start site region 28954
Cpgi13108 3 40540600 to 40541102 502 CpG island CpG island 13108
Tssr28955 3 40540751 to 40540790 39 + TSS region transcription start site region 28955
Gm16114 3 40658867 to 40659166 299 - pseudogene predicted gene 16114
Tssr33067 3 40682548 to 40682582 34 - TSS region transcription start site region 33067
Cpgi13109 3 40683264 to 40683557 293 CpG island CpG island 13109
Cpgi13110 3 40708530 to 40709403 873 CpG island CpG island 13110
Tssr28956 3 40708859 to 40708906 47 + TSS region transcription start site region 28956
Slc25a31 3 40708871 to 40726094 17223 + protein coding gene solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
Tssr28957 3 40708916 to 40708937 21 + TSS region transcription start site region 28957
Tssr28958 3 40744229 to 40744234 5 + TSS region transcription start site region 28958
Hspa4l 3 40744495 to 40796103 51608 + protein coding gene heat shock protein 4 like
Cpgi13111 3 40744614 to 40746166 1552 CpG island CpG island 13111
Tssr28959 3 40745015 to 40745041 26 + TSS region transcription start site region 28959
Tssr28960 3 40745305 to 40745317 12 + TSS region transcription start site region 28960
Tssr28961 3 40745321 to 40745324 3 + TSS region transcription start site region 28961
Tssr28962 3 40745332 to 40745345 13 + TSS region transcription start site region 28962
Tssr28963 3 40745435 to 40745459 24 + TSS region transcription start site region 28963
Tssr28964 3 40745468 to 40745498 30 + TSS region transcription start site region 28964
Tssr28965 3 40745537 to 40745632 95 + TSS region transcription start site region 28965
Tssr33068 3 40746440 to 40746450 10 - TSS region transcription start site region 33068
Tssr28966 3 40746667 to 40746670 3 + TSS region transcription start site region 28966
Tssr28967 3 40783121 to 40783141 20 + TSS region transcription start site region 28967
Tssr28968 3 40784096 to 40784099 3 + TSS region transcription start site region 28968
Tssr28969 3 40784115 to 40784169 54 + TSS region transcription start site region 28969
Tssr28970 3 40785997 to 40786004 7 + TSS region transcription start site region 28970
Tssr28971 3 40792643 to 40792656 13 + TSS region transcription start site region 28971
Cpgi13112 3 40799727 to 40800913 1186 CpG island CpG island 13112
Tssr28972 3 40800013 to 40800050 37 + TSS region transcription start site region 28972
Plk4 3 40800019 to 40816883 16864 + protein coding gene polo like kinase 4
Tssr28973 3 40800057 to 40800068 11 + TSS region transcription start site region 28973
Tssr28974 3 40800778 to 40800786 8 + TSS region transcription start site region 28974
Tssr28975 3 40810118 to 40810133 15 + TSS region transcription start site region 28975
Mfsd8 3 40818103 to 40846856 28753 - protein coding gene major facilitator superfamily domain containing 8
Cpgi13113 3 40846453 to 40847232 779 CpG island CpG island 13113
Gm2011 3 40846820 to 40875388 28568 + pseudogene predicted gene 2011
Tssr33069 3 40846847 to 40846860 13 - TSS region transcription start site region 33069
Gm10731 3 40854676 to 40855123 447 - pseudogene predicted gene 10731
D3Ertd246e 3 40856338 to 40856541 203 DNA segment DNA segment, Chr 3, ERATO Doi 246, expressed
Gm44136 3 40863948 to 40865053 1105 - unclassified gene predicted gene, 44136
Abhd18 3 40875306 to 40937736 62430 + protein coding gene abhydrolase domain containing 18
Gm44524 3 40876977 to 40877247 270 - pseudogene predicted gene 44524
6430590A07Rik 3 40885897 to 40894193 8296 - unclassified non-coding RNA gene RIKEN cDNA 6430590A07 gene
Cpgi13114 3 40893830 to 40894663 833 CpG island CpG island 13114
1700034I23Rik 3 40900199 to 40902543 2344 - protein coding gene RIKEN cDNA 1700034I23 gene
Tssr863 3 40902500 to 40902502 2 - TSS region transcription start site region 863