Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:38188491-39778765

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Nds42 3 38200406 to 38200692 286 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 42
D3Nds43 3 38200746 to 38200895 149 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 43
5430434I15Rik 3 38203151 to 38208119 4968 - lincRNA gene RIKEN cDNA 5430434I15 gene
Gm2965 3 38223451 to 38223793 342 + pseudogene predicted gene 2965
Tssr28927 3 38223563 to 38223575 12 + TSS region transcription start site region 28927
Cpgi13103 3 38228268 to 38228485 217 CpG island CpG island 13103
Gm17955 3 38254024 to 38254803 779 + pseudogene predicted gene, 17955
Tssr862 3 38258857 to 38258860 3 + TSS region transcription start site region 862
Gm25574 3 38267836 to 38268084 248 - unclassified non-coding RNA gene predicted gene, 25574
D3Nds44 3 38296336 to 38296501 165 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 44
Gm42213 3 38366152 to 38368881 2729 - lncRNA gene predicted gene, 42213
Gm42920 3 38369398 to 38373636 4238 + lincRNA gene predicted gene 42920
3830422I06Rik 3 38418971 to 38420151 1180 - unclassified gene RIKEN cDNA 3830422I06 gene
Gm36823 3 38427135 to 38443874 16739 - lincRNA gene predicted gene, 36823
Tssr28928 3 38438657 to 38438658 1 + TSS region transcription start site region 28928
Gm7815 3 38438962 to 38439793 831 - pseudogene predicted gene 7815
Ankrd50 3 38449259 to 38484844 35585 - protein coding gene ankyrin repeat domain 50
Cpgi13104 3 38484295 to 38485406 1111 CpG island CpG island 13104
Tssr33057 3 38484779 to 38484791 12 - TSS region transcription start site region 33057
Tssr33058 3 38484802 to 38484822 20 - TSS region transcription start site region 33058
Tssr33059 3 38484831 to 38484864 33 - TSS region transcription start site region 33059
Tssr28929 3 38485195 to 38485211 16 + TSS region transcription start site region 28929
Gm24462 3 38558109 to 38558214 105 - miRNA gene predicted gene, 24462
Gm7824 3 38558137 to 38558668 531 - pseudogene predicted gene 7824
Tssr33060 3 38558856 to 38558861 5 - TSS region transcription start site region 33060
Gm43538 3 38614247 to 38615558 1311 + lincRNA gene predicted gene 43538
Gm29879 3 38663608 to 38709223 45615 + lncRNA gene predicted gene, 29879
Gm29959 3 38760483 to 38761949 1466 - lncRNA gene predicted gene, 29959
C230034O21Rik 3 38880583 to 38886340 5757 - antisense lncRNA gene RIKEN cDNA C230034O21 gene
Cpgi13105 3 38884982 to 38888522 3540 CpG island CpG island 13105
Tssr28930 3 38885312 to 38885331 19 + TSS region transcription start site region 28930
Tssr28931 3 38885683 to 38885702 19 + TSS region transcription start site region 28931
Tssr28932 3 38885710 to 38885728 18 + TSS region transcription start site region 28932
Tssr28933 3 38885742 to 38885764 22 + TSS region transcription start site region 28933
Tssr28934 3 38885843 to 38885854 11 + TSS region transcription start site region 28934
Tssr28935 3 38885876 to 38885887 11 + TSS region transcription start site region 28935
Tssr28936 3 38885888 to 38885905 17 + TSS region transcription start site region 28936
Fat4 3 38886940 to 39011985 125045 + protein coding gene FAT atypical cadherin 4
Tssr28937 3 38902005 to 38902008 3 + TSS region transcription start site region 28937
D3Mit295 3 38928541 to 38928642 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 295
Cpgi13106 3 38983491 to 38983765 274 CpG island CpG island 13106
Gm43539 3 39008602 to 39009681 1079 - antisense lncRNA gene predicted gene 43539
Tssr33061 3 39009700 to 39009708 8 - TSS region transcription start site region 33061
Tssr28938 3 39009826 to 39009838 12 + TSS region transcription start site region 28938
Tssr28939 3 39011789 to 39011793 4 + TSS region transcription start site region 28939
D3Mit3 3 39047078 to 39047179 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 3
Gm43308 3 39128533 to 39128905 372 - pseudogene predicted gene 43308
Gm30011 3 39150832 to 39159670 8838 - lncRNA gene predicted gene, 30011
Gm43008 3 39217561 to 39217846 285 - pseudogene predicted gene 43008
Gm42214 3 39277131 to 39305932 28801 + lncRNA gene predicted gene, 42214
Gm9845 3 39358306 to 39358903 597 - pseudogene predicted pseudogene 9845
Tssr33062 3 39359156 to 39359160 4 - TSS region transcription start site region 33062
Tssr28940 3 39364563 to 39364565 2 + TSS region transcription start site region 28940
Gm20566 3 39443893 to 39444348 455 + pseudogene predicted gene, 20566
Gm30063 3 39460780 to 39598651 137871 + lncRNA gene predicted gene, 30063
Gm42215 3 39525522 to 39534150 8628 - lncRNA gene predicted gene, 42215
Tssr33063 3 39533910 to 39533921 11 - TSS region transcription start site region 33063
D3Mit307 3 39539052 to 39539157 105 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 307
n-R5s195 3 39635964 to 39636082 118 - rRNA gene nuclear encoded rRNA 5S 195
Gm42781 3 39636059 to 39638777 2718 + unclassified gene predicted gene 42781
Gm23796 3 39666288 to 39666447 159 + snRNA gene predicted gene, 23796
Gm46834 3 39713150 to 39725653 12503 + lncRNA gene predicted gene, 46834