Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:37578533-40678905

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata5 3 37419950 to 37579096 159146 + protein coding gene spermatogenesis associated 5
Gm36412 3 37541876 to 37602389 60513 - lncRNA gene predicted gene, 36412
Gm12565 3 37599427 to 37600072 645 - pseudogene predicted gene 12565
Tssr33053 3 37600237 to 37600244 7 - TSS region transcription start site region 33053
Cpgi13099 3 37605840 to 37606075 235 CpG island CpG island 13099
Tssr28907 3 37613911 to 37613927 16 + TSS region transcription start site region 28907
4930594O21Rik 3 37613913 to 37615276 1363 + lincRNA gene RIKEN cDNA 4930594O21 gene
Gm42922 3 37638579 to 37640656 2077 - unclassified gene predicted gene 42922
Tssr28908 3 37639664 to 37639693 29 + TSS region transcription start site region 28908
Cpgi13100 3 37639681 to 37641416 1735 CpG island CpG island 13100
Tssr28909 3 37639905 to 37639912 7 + TSS region transcription start site region 28909
Tssr28910 3 37639928 to 37639943 15 + TSS region transcription start site region 28910
Tssr28911 3 37639945 to 37639964 19 + TSS region transcription start site region 28911
Spry1 3 37639947 to 37644598 4651 + protein coding gene sprouty RTK signaling antagonist 1
Tssr28912 3 37639985 to 37639986 1 + TSS region transcription start site region 28912
Tssr28913 3 37643266 to 37643280 14 + TSS region transcription start site region 28913
Tssr28914 3 37643724 to 37643745 21 + TSS region transcription start site region 28914
Tssr28915 3 37644027 to 37644036 9 + TSS region transcription start site region 28915
Tssr28916 3 37644132 to 37644144 12 + TSS region transcription start site region 28916
Gm43820 3 37644607 to 37647952 3345 + unclassified gene predicted gene 43820
Tssr28917 3 37644819 to 37644823 4 + TSS region transcription start site region 28917
Gm46799 3 37652680 to 37656517 3837 - lncRNA gene predicted gene, 46799
Tssr28918 3 37654414 to 37654431 17 + TSS region transcription start site region 28918
Tssr28919 3 37654477 to 37654505 28 + TSS region transcription start site region 28919
Tssr28920 3 37654765 to 37654778 13 + TSS region transcription start site region 28920
Tssr28921 3 37656018 to 37656027 9 + TSS region transcription start site region 28921
Tssr28922 3 37668815 to 37668834 19 + TSS region transcription start site region 28922
Cpgi13101 3 37669005 to 37669338 333 CpG island CpG island 13101
Tssr33054 3 37672419 to 37672425 6 - TSS region transcription start site region 33054
Gm42211 3 37690464 to 37694856 4392 - lncRNA gene predicted gene, 42211
Tssr33055 3 37707413 to 37707415 2 - TSS region transcription start site region 33055
Gm43414 3 37708021 to 37711208 3187 + unclassified gene predicted gene 43414
Gm5148 3 37714190 to 37724360 10170 - protein coding gene predicted gene 5148
Tssr28923 3 37714708 to 37714709 1 + TSS region transcription start site region 28923
Rps23-ps1 3 37714740 to 37715164 424 + pseudogene ribosomal protein S23, pseudogene 1
Gm36620 3 37724227 to 37741319 17092 + lncRNA gene predicted gene, 36620
Cpgi13102 3 37724259 to 37724667 408 CpG island CpG island 13102
Tssr33056 3 37724321 to 37724338 17 - TSS region transcription start site region 33056
Tssr28924 3 37734700 to 37734712 12 + TSS region transcription start site region 28924
Rpl31-ps15 3 37734730 to 37735104 374 + pseudogene ribosomal protein L31, pseudogene 15
Gm42210 3 37753201 to 37774398 21197 + lncRNA gene predicted gene, 42210
Tssr28925 3 37753433 to 37753441 8 + TSS region transcription start site region 28925
Gm42921 3 37761037 to 37767297 6260 + lincRNA gene predicted gene 42921
Tssr28926 3 37761215 to 37761233 18 + TSS region transcription start site region 28926
Gm26404 3 37802544 to 37802652 108 - snoRNA gene predicted gene, 26404
4930556A17Rik 3 37828218 to 37848291 20073 + lncRNA gene RIKEN cDNA 4930556A17 gene
D3Nds40 3 37834305 to 37834710 405 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 40
Gm42752 3 37838468 to 37839573 1105 + unclassified gene predicted gene 42752
Gm42753 3 37841798 to 37843065 1267 + unclassified gene predicted gene 42753
D3Nds41 3 37880010 to 37880169 159 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 41
D3Nds48 3 37880020 to 37880175 155 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 48
D3Mit332 3 37880031 to 37880142 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 332
Gm20755 3 37898813 to 37992728 93915 + lincRNA gene predicted gene, 20755
Gm7799 3 37959612 to 37960087 475 - pseudogene predicted gene 7799
Gm42751 3 37982792 to 37983350 558 + unclassified gene predicted gene 42751
Gm22899 3 37995105 to 37995235 130 - snoRNA gene predicted gene, 22899
Gm43821 3 38094629 to 38130191 35562 - lincRNA gene predicted gene 43821
Rpl21-ps10 3 38107443 to 38107922 479 - pseudogene ribosomal protein L21, pseudogene 10
Elyms2 3 38145449 to 38145449 0 QTL ENU induced lymphoma susceptibility 2
D3Mit169 3 38151018 to 38151217 199 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 169
Gm36680 3 38151906 to 38159148 7242 + lncRNA gene predicted gene, 36680
D3Nds42 3 38200406 to 38200692 286 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 42
D3Nds43 3 38200746 to 38200895 149 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 43
5430434I15Rik 3 38203151 to 38208119 4968 - lincRNA gene RIKEN cDNA 5430434I15 gene
Gm2965 3 38223451 to 38223793 342 + pseudogene predicted gene 2965
Tssr28927 3 38223563 to 38223575 12 + TSS region transcription start site region 28927
Cpgi13103 3 38228268 to 38228485 217 CpG island CpG island 13103
Gm17955 3 38254024 to 38254803 779 + pseudogene predicted gene, 17955
Tssr862 3 38258857 to 38258860 3 + TSS region transcription start site region 862
Gm25574 3 38267836 to 38268084 248 - unclassified non-coding RNA gene predicted gene, 25574
D3Nds44 3 38296336 to 38296501 165 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 44
Gm42213 3 38366152 to 38368881 2729 - lncRNA gene predicted gene, 42213
Gm42920 3 38369398 to 38373636 4238 + lincRNA gene predicted gene 42920
3830422I06Rik 3 38418971 to 38420151 1180 - unclassified gene RIKEN cDNA 3830422I06 gene
Gm36823 3 38427135 to 38443874 16739 - lincRNA gene predicted gene, 36823
Tssr28928 3 38438657 to 38438658 1 + TSS region transcription start site region 28928
Gm7815 3 38438962 to 38439793 831 - pseudogene predicted gene 7815
Ankrd50 3 38449259 to 38484844 35585 - protein coding gene ankyrin repeat domain 50
Cpgi13104 3 38484295 to 38485406 1111 CpG island CpG island 13104
Tssr33057 3 38484779 to 38484791 12 - TSS region transcription start site region 33057
Tssr33058 3 38484802 to 38484822 20 - TSS region transcription start site region 33058
Tssr33059 3 38484831 to 38484864 33 - TSS region transcription start site region 33059
Tssr28929 3 38485195 to 38485211 16 + TSS region transcription start site region 28929
Gm24462 3 38558109 to 38558214 105 - miRNA gene predicted gene, 24462
Gm7824 3 38558137 to 38558668 531 - pseudogene predicted gene 7824
Tssr33060 3 38558856 to 38558861 5 - TSS region transcription start site region 33060
Gm43538 3 38614247 to 38615558 1311 + lincRNA gene predicted gene 43538
Gm29879 3 38663608 to 38709223 45615 + lncRNA gene predicted gene, 29879
Gm29959 3 38760483 to 38761949 1466 - lncRNA gene predicted gene, 29959
C230034O21Rik 3 38880583 to 38886340 5757 - antisense lncRNA gene RIKEN cDNA C230034O21 gene
Cpgi13105 3 38884982 to 38888522 3540 CpG island CpG island 13105
Tssr28930 3 38885312 to 38885331 19 + TSS region transcription start site region 28930
Tssr28931 3 38885683 to 38885702 19 + TSS region transcription start site region 28931
Tssr28932 3 38885710 to 38885728 18 + TSS region transcription start site region 28932
Tssr28933 3 38885742 to 38885764 22 + TSS region transcription start site region 28933
Tssr28934 3 38885843 to 38885854 11 + TSS region transcription start site region 28934
Tssr28935 3 38885876 to 38885887 11 + TSS region transcription start site region 28935
Tssr28936 3 38885888 to 38885905 17 + TSS region transcription start site region 28936
Fat4 3 38886940 to 39011985 125045 + protein coding gene FAT atypical cadherin 4
Tssr28937 3 38902005 to 38902008 3 + TSS region transcription start site region 28937
D3Mit295 3 38928541 to 38928642 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 295
Cpgi13106 3 38983491 to 38983765 274 CpG island CpG island 13106
Gm43539 3 39008602 to 39009681 1079 - antisense lncRNA gene predicted gene 43539
Tssr33061 3 39009700 to 39009708 8 - TSS region transcription start site region 33061
Tssr28938 3 39009826 to 39009838 12 + TSS region transcription start site region 28938
Tssr28939 3 39011789 to 39011793 4 + TSS region transcription start site region 28939
D3Mit3 3 39047078 to 39047179 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 3
Gm43308 3 39128533 to 39128905 372 - pseudogene predicted gene 43308
Gm30011 3 39150832 to 39159670 8838 - lncRNA gene predicted gene, 30011
Gm43008 3 39217561 to 39217846 285 - pseudogene predicted gene 43008
Gm42214 3 39277131 to 39305932 28801 + lncRNA gene predicted gene, 42214
Gm9845 3 39358306 to 39358903 597 - pseudogene predicted pseudogene 9845
Tssr33062 3 39359156 to 39359160 4 - TSS region transcription start site region 33062
Tssr28940 3 39364563 to 39364565 2 + TSS region transcription start site region 28940
Gm20566 3 39443893 to 39444348 455 + pseudogene predicted gene, 20566
Gm30063 3 39460780 to 39598651 137871 + lncRNA gene predicted gene, 30063
Gm42215 3 39525522 to 39534150 8628 - lncRNA gene predicted gene, 42215
Tssr33063 3 39533910 to 39533921 11 - TSS region transcription start site region 33063
D3Mit307 3 39539052 to 39539157 105 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 307
n-R5s195 3 39635964 to 39636082 118 - rRNA gene nuclear encoded rRNA 5S 195
Gm42781 3 39636059 to 39638777 2718 + unclassified gene predicted gene 42781
Gm23796 3 39666288 to 39666447 159 + snRNA gene predicted gene, 23796
Gm46834 3 39713150 to 39725653 12503 + lncRNA gene predicted gene, 46834
Gm23831 3 39799632 to 39799716 84 - snoRNA gene predicted gene, 23831
Gm42786 3 39820481 to 39820760 279 - pseudogene predicted gene 42786
Gm42785 3 39823577 to 39827411 3834 + pseudogene predicted gene 42785
Tssr33064 3 39937416 to 39937422 6 - TSS region transcription start site region 33064
Tssr28941 3 39979736 to 39979743 7 + TSS region transcription start site region 28941
Tssr28942 3 39979777 to 39979785 8 + TSS region transcription start site region 28942
Tssr28943 3 40160354 to 40160385 31 + TSS region transcription start site region 28943
D3Mit94 3 40212498 to 40212608 110 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 94
Tssr28944 3 40410161 to 40410163 2 + TSS region transcription start site region 28944
Gm30184 3 40425710 to 40453799 28089 - lncRNA gene predicted gene, 30184
Gm42216 3 40458429 to 40461148 2719 + lncRNA gene predicted gene, 42216
Tssr28945 3 40459843 to 40459844 1 + TSS region transcription start site region 28945
Gm42217 3 40480897 to 40485732 4835 + lncRNA gene predicted gene, 42217
Gm46801 3 40487017 to 40489930 2913 + lncRNA gene predicted gene, 46801
1700017G19Rik 3 40504867 to 40522912 18045 - lincRNA gene RIKEN cDNA 1700017G19 gene
Tssr33065 3 40509737 to 40509782 45 - TSS region transcription start site region 33065
Gm46800 3 40509980 to 40511831 1851 + lncRNA gene predicted gene, 46800
Gm23810 3 40518818 to 40518891 73 + miRNA gene predicted gene, 23810
Tssr33066 3 40522909 to 40522918 9 - TSS region transcription start site region 33066
Tssr28946 3 40531007 to 40531029 22 + TSS region transcription start site region 28946
Tssr28947 3 40531143 to 40531156 13 + TSS region transcription start site region 28947
Cpgi13107 3 40531251 to 40532079 828 CpG island CpG island 13107
Intu 3 40531291 to 40704776 173485 + protein coding gene inturned planar cell polarity protein
Tssr28948 3 40531391 to 40531432 41 + TSS region transcription start site region 28948
Tssr28949 3 40531465 to 40531470 5 + TSS region transcription start site region 28949
Tssr28950 3 40531548 to 40531562 14 + TSS region transcription start site region 28950
Tssr28951 3 40531578 to 40531599 21 + TSS region transcription start site region 28951
Tssr28952 3 40531608 to 40531626 18 + TSS region transcription start site region 28952
Tssr28953 3 40531640 to 40531653 13 + TSS region transcription start site region 28953
Tssr28954 3 40531682 to 40531705 23 + TSS region transcription start site region 28954
Cpgi13108 3 40540600 to 40541102 502 CpG island CpG island 13108
Tssr28955 3 40540751 to 40540790 39 + TSS region transcription start site region 28955
Gm16114 3 40658867 to 40659166 299 - pseudogene predicted gene 16114