Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:36919819-38369823

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4932438A13Rik 3 36863104 to 37053033 189929 + protein coding gene RIKEN cDNA 4932438A13 gene
Tssr28882 3 36942381 to 36942411 30 + TSS region transcription start site region 28882
Tssr28883 3 37044238 to 37044244 6 + TSS region transcription start site region 28883
D3Nds47 3 37045899 to 37046065 166 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 47
Gm12531 3 37052215 to 37060035 7820 - antisense lncRNA gene predicted gene 12531
D3Nds50 3 37058589 to 37058639 50 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 50
Tssr28884 3 37062799 to 37062818 19 + TSS region transcription start site region 28884
Tssr28885 3 37063042 to 37063049 7 + TSS region transcription start site region 28885
Cpgi13093 3 37063148 to 37063905 757 CpG island CpG island 13093
Adad1 3 37063527 to 37121930 58403 + protein coding gene adenosine deaminase domain containing 1 (testis specific)
Tssr28886 3 37063612 to 37063616 4 + TSS region transcription start site region 28886
Tssr28887 3 37063631 to 37063639 8 + TSS region transcription start site region 28887
Tssr28888 3 37063644 to 37063672 28 + TSS region transcription start site region 28888
Tssr28889 3 37063674 to 37063697 23 + TSS region transcription start site region 28889
Tssr28890 3 37063698 to 37063700 2 + TSS region transcription start site region 28890
Tssr28891 3 37063704 to 37063715 11 + TSS region transcription start site region 28891
Gm12582 3 37077655 to 37078351 696 + pseudogene predicted gene 12582
Gm12583 3 37108174 to 37109026 852 + pseudogene predicted gene 12583
Gm12584 3 37116734 to 37117838 1104 + pseudogene predicted gene 12584
D3Nds6 3 37120077 to 37120217 140 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 6
Il2 3 37120713 to 37125954 5241 - protein coding gene interleukin 2
Ssial2 3 37120713 to 37125954 5241 QTL susceptibility to sialadenitis 2
Aod2 3 37125593 to 68809613 31684020 QTL autoimmune ovarian dysgenesis 2
D3Mit21 3 37125593 to 37125823 230 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 21
D3Nds27 3 37125736 to 37125864 128 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 27
Tssr33045 3 37125773 to 37125848 75 - TSS region transcription start site region 33045
Tssr33046 3 37125871 to 37125882 11 - TSS region transcription start site region 33046
Tssr33047 3 37125901 to 37125906 5 - TSS region transcription start site region 33047
Tssr33048 3 37125943 to 37125969 26 - TSS region transcription start site region 33048
Gm36000 3 37169725 to 37176647 6922 - lncRNA gene predicted gene, 36000
Tssr33049 3 37174672 to 37174680 8 - TSS region transcription start site region 33049
Gm12532 3 37182885 to 37188593 5708 + lincRNA gene predicted gene 12532
Il21 3 37222759 to 37232636 9877 - protein coding gene interleukin 21
Gm36168 3 37225376 to 37227110 1734 + lncRNA gene predicted gene, 36168
Gm12534 3 37231333 to 37232469 1136 + antisense lncRNA gene predicted gene 12534
Tssr28892 3 37231484 to 37231495 11 + TSS region transcription start site region 28892
Tssr33050 3 37232633 to 37232637 4 - TSS region transcription start site region 33050
Gm43822 3 37232867 to 37233342 475 + unclassified gene predicted gene 43822
Gm24169 3 37256784 to 37256893 109 - miRNA gene predicted gene, 24169
Cpgi13094 3 37257786 to 37257976 190 CpG island CpG island 13094
Tssr28893 3 37281505 to 37281515 10 + TSS region transcription start site region 28893
D3Nds56 3 37295914 to 37296066 152 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 56
Cetn4 3 37308627 to 37312446 3819 - protein coding gene centrin 4
Cpgi13095 3 37312020 to 37312914 894 CpG island CpG island 13095
Tssr33051 3 37312418 to 37312465 47 - TSS region transcription start site region 33051
Tssr28894 3 37312514 to 37312575 61 + TSS region transcription start site region 28894
Gm43439 3 37312519 to 37404866 92347 + unclassified non-coding RNA gene predicted gene 43439
Bbs12 3 37312554 to 37321453 8899 + protein coding gene Bardet-Biedl syndrome 12 (human)
Gm12540 3 37327072 to 37327390 318 + pseudogene predicted gene 12540
Fgf2os 3 37335332 to 37349740 14408 - antisense lncRNA gene fibroblast growth factor 2, opposite strand
Gm43488 3 37339017 to 37341520 2503 + unclassified gene predicted gene 43488
Cpgi13096 3 37348209 to 37349431 1222 CpG island CpG island 13096
Fgf2 3 37348477 to 37404893 56416 + protein coding gene fibroblast growth factor 2
Tssr28895 3 37348485 to 37348493 8 + TSS region transcription start site region 28895
Tssr28896 3 37348645 to 37348716 71 + TSS region transcription start site region 28896
D3Nds51 3 37349659 to 37349933 274 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 51
Tssr28897 3 37365451 to 37365452 1 + TSS region transcription start site region 28897
Tssr28898 3 37366881 to 37366895 14 + TSS region transcription start site region 28898
D3Nds34 3 37373320 to 37373516 196 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 34
Gm42923 3 37392206 to 37395101 2895 - unclassified gene predicted gene 42923
Nudt6 3 37404982 to 37420186 15204 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 6
Cpgi13097 3 37418975 to 37421080 2105 CpG island CpG island 13097
Tssr33052 3 37419573 to 37419605 32 - TSS region transcription start site region 33052
Spata5 3 37419950 to 37579096 159146 + protein coding gene spermatogenesis associated 5
Tssr28899 3 37420257 to 37420272 15 + TSS region transcription start site region 28899
Tssr28900 3 37420273 to 37420335 62 + TSS region transcription start site region 28900
Tssr28901 3 37420341 to 37420356 15 + TSS region transcription start site region 28901
Tssr28902 3 37420398 to 37420407 9 + TSS region transcription start site region 28902
D3Nds46 3 37472213 to 37472329 116 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 46
Tssr28903 3 37481353 to 37481372 19 + TSS region transcription start site region 28903
Tssr28904 3 37481416 to 37481440 24 + TSS region transcription start site region 28904
Cpgi13098 3 37481419 to 37481575 156 CpG island CpG island 13098
Tssr28905 3 37481470 to 37481493 23 + TSS region transcription start site region 28905
Tssr28906 3 37481559 to 37481570 11 + TSS region transcription start site region 28906
Gm43484 3 37488827 to 37494792 5965 + unclassified gene predicted gene 43484
Gm36412 3 37541876 to 37602389 60513 - lncRNA gene predicted gene, 36412
D3Ertd740e 3 37549108 to 37549335 227 DNA segment DNA segment, Chr 3, ERATO Doi 740, expressed
Gm12564 3 37556183 to 37556503 320 - pseudogene predicted gene 12564
Gm12565 3 37599427 to 37600072 645 - pseudogene predicted gene 12565
Tssr33053 3 37600237 to 37600244 7 - TSS region transcription start site region 33053
Cpgi13099 3 37605840 to 37606075 235 CpG island CpG island 13099
Tssr28907 3 37613911 to 37613927 16 + TSS region transcription start site region 28907
4930594O21Rik 3 37613913 to 37615276 1363 + lincRNA gene RIKEN cDNA 4930594O21 gene
Gm42922 3 37638579 to 37640656 2077 - unclassified gene predicted gene 42922
Tssr28908 3 37639664 to 37639693 29 + TSS region transcription start site region 28908
Cpgi13100 3 37639681 to 37641416 1735 CpG island CpG island 13100
Tssr28909 3 37639905 to 37639912 7 + TSS region transcription start site region 28909
Tssr28910 3 37639928 to 37639943 15 + TSS region transcription start site region 28910
Tssr28911 3 37639945 to 37639964 19 + TSS region transcription start site region 28911
Spry1 3 37639947 to 37644598 4651 + protein coding gene sprouty RTK signaling antagonist 1
Tssr28912 3 37639985 to 37639986 1 + TSS region transcription start site region 28912
Tssr28913 3 37643266 to 37643280 14 + TSS region transcription start site region 28913
Tssr28914 3 37643724 to 37643745 21 + TSS region transcription start site region 28914
Tssr28915 3 37644027 to 37644036 9 + TSS region transcription start site region 28915
Tssr28916 3 37644132 to 37644144 12 + TSS region transcription start site region 28916
Gm43820 3 37644607 to 37647952 3345 + unclassified gene predicted gene 43820
Tssr28917 3 37644819 to 37644823 4 + TSS region transcription start site region 28917
Gm46799 3 37652680 to 37656517 3837 - lncRNA gene predicted gene, 46799
Tssr28918 3 37654414 to 37654431 17 + TSS region transcription start site region 28918
Tssr28919 3 37654477 to 37654505 28 + TSS region transcription start site region 28919
Tssr28920 3 37654765 to 37654778 13 + TSS region transcription start site region 28920
Tssr28921 3 37656018 to 37656027 9 + TSS region transcription start site region 28921
Tssr28922 3 37668815 to 37668834 19 + TSS region transcription start site region 28922
Cpgi13101 3 37669005 to 37669338 333 CpG island CpG island 13101
Tssr33054 3 37672419 to 37672425 6 - TSS region transcription start site region 33054
Gm42211 3 37690464 to 37694856 4392 - lncRNA gene predicted gene, 42211
Tssr33055 3 37707413 to 37707415 2 - TSS region transcription start site region 33055
Gm43414 3 37708021 to 37711208 3187 + unclassified gene predicted gene 43414
Gm5148 3 37714190 to 37724360 10170 - protein coding gene predicted gene 5148
Tssr28923 3 37714708 to 37714709 1 + TSS region transcription start site region 28923
Rps23-ps1 3 37714740 to 37715164 424 + pseudogene ribosomal protein S23, pseudogene 1
Gm36620 3 37724227 to 37741319 17092 + lncRNA gene predicted gene, 36620
Cpgi13102 3 37724259 to 37724667 408 CpG island CpG island 13102
Tssr33056 3 37724321 to 37724338 17 - TSS region transcription start site region 33056
Tssr28924 3 37734700 to 37734712 12 + TSS region transcription start site region 28924
Rpl31-ps15 3 37734730 to 37735104 374 + pseudogene ribosomal protein L31, pseudogene 15
Gm42210 3 37753201 to 37774398 21197 + lncRNA gene predicted gene, 42210
Tssr28925 3 37753433 to 37753441 8 + TSS region transcription start site region 28925
Gm42921 3 37761037 to 37767297 6260 + lincRNA gene predicted gene 42921
Tssr28926 3 37761215 to 37761233 18 + TSS region transcription start site region 28926
Gm26404 3 37802544 to 37802652 108 - snoRNA gene predicted gene, 26404
4930556A17Rik 3 37828218 to 37848291 20073 + lncRNA gene RIKEN cDNA 4930556A17 gene
D3Nds40 3 37834305 to 37834710 405 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 40
Gm42752 3 37838468 to 37839573 1105 + unclassified gene predicted gene 42752
Gm42753 3 37841798 to 37843065 1267 + unclassified gene predicted gene 42753
D3Nds41 3 37880010 to 37880169 159 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 41
D3Nds48 3 37880020 to 37880175 155 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 48
D3Mit332 3 37880031 to 37880142 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 332
Gm20755 3 37898813 to 37992728 93915 + lincRNA gene predicted gene, 20755
Gm7799 3 37959612 to 37960087 475 - pseudogene predicted gene 7799
Gm42751 3 37982792 to 37983350 558 + unclassified gene predicted gene 42751
Gm22899 3 37995105 to 37995235 130 - snoRNA gene predicted gene, 22899
Gm43821 3 38094629 to 38130191 35562 - lincRNA gene predicted gene 43821
Rpl21-ps10 3 38107443 to 38107922 479 - pseudogene ribosomal protein L21, pseudogene 10
Elyms2 3 38145449 to 38145449 0 QTL ENU induced lymphoma susceptibility 2
D3Mit169 3 38151018 to 38151217 199 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 169
Gm36680 3 38151906 to 38159148 7242 + lncRNA gene predicted gene, 36680
D3Nds42 3 38200406 to 38200692 286 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 42
D3Nds43 3 38200746 to 38200895 149 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 43
5430434I15Rik 3 38203151 to 38208119 4968 - lincRNA gene RIKEN cDNA 5430434I15 gene
Gm2965 3 38223451 to 38223793 342 + pseudogene predicted gene 2965
Tssr28927 3 38223563 to 38223575 12 + TSS region transcription start site region 28927
Cpgi13103 3 38228268 to 38228485 217 CpG island CpG island 13103
Gm17955 3 38254024 to 38254803 779 + pseudogene predicted gene, 17955
Tssr862 3 38258857 to 38258860 3 + TSS region transcription start site region 862
Gm25574 3 38267836 to 38268084 248 - unclassified non-coding RNA gene predicted gene, 25574
D3Nds44 3 38296336 to 38296501 165 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 44
Gm42213 3 38366152 to 38368881 2729 - lncRNA gene predicted gene, 42213
Gm42920 3 38369398 to 38373636 4238 + lincRNA gene predicted gene 42920
Sles3 3 143647422 to 37120713 -106526709 QTL systemic lupus erythmatosus suppressor 3